RNA–Protein interactions for RNA: ENST00000610289.2

PRAMEF28P-201, Transcript of PRAME family member 28, pseudogene, humanhuman

BASIC

Gene PRAMEF28P, Length 1,450 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF28P-201ENST00000610289 NBPF6Q5VWK0 638 aa15.14■□□□□ 0.01
PRAMEF28P-201ENST00000610289 NBPF4Q96M43 638 aa15.14■□□□□ 0.01
PRAMEF28P-201ENST00000610289 FYB1O15117 783 aa15.14■□□□□ 0.01
PRAMEF28P-201ENST00000610289 SLC24A1O60721 1099 aa15.14■□□□□ 0.01
PRAMEF28P-201ENST00000610289 RRS1Q15050 365 aaKnown RBP15.14■□□□□ 0.01
PRAMEF28P-201ENST00000610289 NSD2O96028 1365 aa15.13■□□□□ 0.01
PRAMEF28P-201ENST00000610289 POLD1P28340 1107 aa15.13■□□□□ 0.01
PRAMEF28P-201ENST00000610289 GGNBP2Q9H3C7 697 aa15.13■□□□□ 0.01
PRAMEF28P-201ENST00000610289 MEGF6O75095 1541 aa15.13■□□□□ 0.01
PRAMEF28P-201ENST00000610289 GPR162Q16538 588 aa15.12■□□□□ 0.01
PRAMEF28P-201ENST00000610289 KLHL34Q8N239 644 aa15.12■□□□□ 0.01
PRAMEF28P-201ENST00000610289 USHBP1Q8N6Y0 703 aa15.12■□□□□ 0.01
PRAMEF28P-201ENST00000610289 CCNL1Q9UK58 526 aaPredicted RBP15.11■□□□□ 0.01
PRAMEF28P-201ENST00000610289 FAM208AQ9UK61 1670 aaKnown RBP15.11■□□□□ 0.01
PRAMEF28P-201ENST00000610289 RTL1A6NKG5 1358 aa15.09■□□□□ 0.01
PRAMEF28P-201ENST00000610289 HSP90AB2PQ58FF8 381 aa15.09■□□□□ 0.01
PRAMEF28P-201ENST00000610289 RGPD2P0DJD1 1756 aa15.09■□□□□ 0.01
PRAMEF28P-201ENST00000610289 TMF1P82094 1093 aa15.08■□□□□ 0.01
PRAMEF28P-201ENST00000610289 COL23A1Q86Y22 540 aaPredicted RBP15.08■□□□□ 0.01
PRAMEF28P-201ENST00000610289 NLGN2Q8NFZ4 835 aa15.08■□□□□ 0.01
PRAMEF28P-201ENST00000610289 RAPGEF4Q8WZA2 1011 aa15.08■□□□□ 0.01
PRAMEF28P-201ENST00000610289 CHD4Q14839 1912 aa15.08■□□□□ 0
PRAMEF28P-201ENST00000610289 CGNL1Q0VF96 1302 aa15.08■□□□□ 0
PRAMEF28P-201ENST00000610289 DOT1LQ8TEK3 1739 aa15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 USP47Q96K76 1375 aa15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 MSH5O43196 834 aa15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 TATP17735 454 aaPredicted RBP15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 PELP1Q8IZL8 1130 aaKnown RBP15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 QSER1Q2KHR3 1735 aa15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 SHANK3Q9BYB0 1731 aa15.07■□□□□ 0
PRAMEF28P-201ENST00000610289 LY75O60449 1722 aa15.06■□□□□ 0
PRAMEF28P-201ENST00000610289 COL24A1Q17RW2 1714 aa15.06■□□□□ 0
PRAMEF28P-201ENST00000610289 C1QTNF8P60827 252 aa15.06■□□□□ 0
PRAMEF28P-201ENST00000610289 INSRP06213 1382 aa15.05■□□□□ 0
PRAMEF28P-201ENST00000610289 CARD14Q9BXL6 1004 aa15.05■□□□□ -0
PRAMEF28P-201ENST00000610289 TUBGCP6Q96RT7 1819 aa15.04■□□□□ -0
PRAMEF28P-201ENST00000610289 CYP27B1O15528 508 aa15.04■□□□□ -0
PRAMEF28P-201ENST00000610289 SMG6Q86US8 1419 aaKnown RBP15.04■□□□□ -0
PRAMEF28P-201ENST00000610289 YBX3P16989 372 aaKnown RBP eCLIP15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 MSL1Q68DK7 614 aa15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 MPRIPQ6WCQ1 1025 aa15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 PCDH11XQ9BZA7 1347 aa15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 PCDH11YQ9BZA8 1340 aa15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 FLT4P35916 1363 aa15.03■□□□□ -0
PRAMEF28P-201ENST00000610289 SENP3-EIF4A1A0A087X0R7 540 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 CDCA8Q53HL2 280 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 EMILIN1Q9Y6C2 1016 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 CEP350Q5VT06 3117 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 KIF24Q5T7B8 1368 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 PALLDQ8WX93 1383 aa15.01□□□□□ -0.01
PRAMEF28P-201ENST00000610289 GRIN3BO60391 1043 aa15□□□□□ -0.01
PRAMEF28P-201ENST00000610289 AMIGO3Q86WK7 504 aa15□□□□□ -0.01
PRAMEF28P-201ENST00000610289 FLAD1Q8NFF5 587 aa15□□□□□ -0.01
PRAMEF28P-201ENST00000610289 PIGBQ92521 554 aa14.99□□□□□ -0.01
PRAMEF28P-201ENST00000610289 PCGF6Q9BYE7 350 aa14.99□□□□□ -0.01
PRAMEF28P-201ENST00000610289 PPM1GO15355 546 aaPredicted RBP14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 GIGYF1O75420 1035 aaPredicted RBP14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 NKX1-1Q15270 411 aaPredicted RBP14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 SMIM5Q71RC9 77 aa14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 SMARCC1Q92922 1105 aaPredicted RBP14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 CD2APQ9Y5K6 639 aa14.98□□□□□ -0.01
PRAMEF28P-201ENST00000610289 HMGB2P26583 209 aaKnown RBP14.97□□□□□ -0.01
PRAMEF28P-201ENST00000610289 NSD3Q9BZ95 1437 aa14.97□□□□□ -0.01
PRAMEF28P-201ENST00000610289 WASHC2AQ641Q2 1341 aa14.96□□□□□ -0.02
PRAMEF28P-201ENST00000610289 AK7Q96M32 723 aa14.95□□□□□ -0.02
PRAMEF28P-201ENST00000610289 EYA1Q99502 592 aa14.95□□□□□ -0.02
PRAMEF28P-201ENST00000610289 SPG7Q9UQ90 795 aa14.95□□□□□ -0.02
PRAMEF28P-201ENST00000610289 NCAPD2Q15021 1401 aa14.95□□□□□ -0.02
PRAMEF28P-201ENST00000610289 C5P01031 1676 aa14.95□□□□□ -0.02
PRAMEF28P-201ENST00000610289 KIF20BQ96Q89 1820 aa14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 LOC102724428A0A0B4J2F2 783 aa14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 PHF14O94880 888 aa14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 SIK1P57059 783 aa14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 POLKQ9UBT6 870 aa14.94□□□□□ -0.02
PRAMEF28P-201ENST00000610289 TOGARAM1Q9Y4F4 1720 aa14.93□□□□□ -0.02
PRAMEF28P-201ENST00000610289 TAF1LQ8IZX4 1826 aa14.93□□□□□ -0.02
PRAMEF28P-201ENST00000610289 LINC00116Q8NCU8 138 aa14.93□□□□□ -0.02
PRAMEF28P-201ENST00000610289 ASAP1Q9ULH1 1129 aa14.93□□□□□ -0.02
PRAMEF28P-201ENST00000610289 C4BP0C0L5 1744 aa14.92□□□□□ -0.02
PRAMEF28P-201ENST00000610289 ITGB4P16144 1822 aa14.92□□□□□ -0.02
PRAMEF28P-201ENST00000610289 PHKG2P15735 406 aa14.91□□□□□ -0.02
PRAMEF28P-201ENST00000610289 ITPK1Q13572 414 aa14.91□□□□□ -0.02
PRAMEF28P-201ENST00000610289 TMOD3Q9NYL9 352 aa14.91□□□□□ -0.02
PRAMEF28P-201ENST00000610289 PKD1L3Q7Z443 1732 aa14.91□□□□□ -0.02
PRAMEF28P-201ENST00000610289 SSFA2P28290 1259 aa14.9□□□□□ -0.02
PRAMEF28P-201ENST00000610289 IFNL2Q8IZJ0 200 aa14.9□□□□□ -0.02
PRAMEF28P-201ENST00000610289 WWC3Q9ULE0 1092 aa14.9□□□□□ -0.02
PRAMEF28P-201ENST00000610289 ATP10DQ9P241 1426 aa14.9□□□□□ -0.02
PRAMEF28P-201ENST00000610289 TNNT2P45379 298 aaPredicted RBP14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 EIF4A2Q14240 407 aaKnown RBP14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 ATG3Q9NT62 314 aa14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 TIMELESSQ9UNS1 1208 aa14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 GNPATO15228 680 aa14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 ATP6V1AP38606 617 aa14.89□□□□□ -0.03
PRAMEF28P-201ENST00000610289 IGSF1Q8N6C5 1336 aa14.88□□□□□ -0.03
PRAMEF28P-201ENST00000610289 MAP2P11137 1827 aaKnown RBP14.88□□□□□ -0.03
PRAMEF28P-201ENST00000610289 UBR3Q6ZT12 1888 aa14.88□□□□□ -0.03
PRAMEF28P-201ENST00000610289 POLR3GLQ9BT43 218 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms