RNA–Protein interactions for RNA: ENST00000607841.5

CTSA-219, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 571 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-219ENST00000607841 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.1■□□□□ 0.65
CTSA-219ENST00000607841 SPG7Q9UQ90 795 aa19.1■□□□□ 0.65
CTSA-219ENST00000607841 COL3A1P02461 1466 aaPredicted RBP19.09■□□□□ 0.65
CTSA-219ENST00000607841 UPF1Q92900 1129 aaKnown RBP eCLIP19.09■□□□□ 0.65
CTSA-219ENST00000607841 LRRC37A3O60309 1634 aa19.09■□□□□ 0.65
CTSA-219ENST00000607841 KDRP35968 1356 aa19.08■□□□□ 0.65
CTSA-219ENST00000607841 AEBP1Q8IUX7 1158 aa19.08■□□□□ 0.64
CTSA-219ENST00000607841 BRWD3Q6RI45 1802 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 WNK3Q9BYP7 1800 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 PCDH11XQ9BZA7 1347 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 PCDH11YQ9BZA8 1340 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 RGPD2P0DJD1 1756 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 AMOTQ4VCS5 1084 aa19.07■□□□□ 0.64
CTSA-219ENST00000607841 PLEKHO1Q53GL0 409 aaPredicted RBP19.07■□□□□ 0.64
CTSA-219ENST00000607841 HMOX1P09601 288 aa19.06■□□□□ 0.64
CTSA-219ENST00000607841 SF3B2Q13435 895 aaKnown RBP19.06■□□□□ 0.64
CTSA-219ENST00000607841 BCL9O00512 1426 aa19.06■□□□□ 0.64
CTSA-219ENST00000607841 U2AF1L5P0DN76 240 aaPredicted RBP19.05■□□□□ 0.64
CTSA-219ENST00000607841 U2AF1Q01081 240 aaKnown RBP eCLIP19.05■□□□□ 0.64
CTSA-219ENST00000607841 IFNL2Q8IZJ0 200 aa19.03■□□□□ 0.64
CTSA-219ENST00000607841 RGPD1P0DJD0 1748 aa19.03■□□□□ 0.64
CTSA-219ENST00000607841 FCHSD2O94868 740 aa19.02■□□□□ 0.64
CTSA-219ENST00000607841 TRIM37O94972 964 aa19.02■□□□□ 0.64
CTSA-219ENST00000607841 CYP27B1O15528 508 aa19.01■□□□□ 0.63
CTSA-219ENST00000607841 PNNQ9H307 717 aaKnown RBP19.01■□□□□ 0.63
CTSA-219ENST00000607841 HSP90AB1P08238 724 aaKnown RBP19■□□□□ 0.63
CTSA-219ENST00000607841 BCL11BQ9C0K0 894 aaPredicted RBP19■□□□□ 0.63
CTSA-219ENST00000607841 NEFMP07197 916 aa18.99■□□□□ 0.63
CTSA-219ENST00000607841 PHKG2P15735 406 aa18.99■□□□□ 0.63
CTSA-219ENST00000607841 C1orf141Q5JVX7 400 aa18.99■□□□□ 0.63
CTSA-219ENST00000607841 ZNF530Q6P9A1 599 aaPredicted RBP18.99■□□□□ 0.63
CTSA-219ENST00000607841 RSPH6AQ9H0K4 717 aa18.99■□□□□ 0.63
CTSA-219ENST00000607841 PRKAR2BP31323 418 aa18.98■□□□□ 0.63
CTSA-219ENST00000607841 WDR43Q15061 677 aaKnown RBP eCLIP18.98■□□□□ 0.63
CTSA-219ENST00000607841 NKX1-1Q15270 411 aaPredicted RBP18.98■□□□□ 0.63
CTSA-219ENST00000607841 BAG6P46379 1132 aa18.97■□□□□ 0.63
CTSA-219ENST00000607841 GAS2L2Q8NHY3 880 aa18.97■□□□□ 0.63
CTSA-219ENST00000607841 ACSBG1Q96GR2 724 aa18.97■□□□□ 0.63
CTSA-219ENST00000607841 APBA3O96018 575 aa18.96■□□□□ 0.63
CTSA-219ENST00000607841 EP400Q96L91 3159 aa18.95■□□□□ 0.62
CTSA-219ENST00000607841 PKD1L3Q7Z443 1732 aa18.95■□□□□ 0.62
CTSA-219ENST00000607841 MTHFSDQ2M296 383 aaKnown RBP18.95■□□□□ 0.62
CTSA-219ENST00000607841 AKAP4Q5JQC9 854 aa18.95■□□□□ 0.62
CTSA-219ENST00000607841 SYTL4Q96C24 671 aaPredicted RBP18.95■□□□□ 0.62
CTSA-219ENST00000607841 KCNQ2O43526 872 aa18.94■□□□□ 0.62
CTSA-219ENST00000607841 PRIM1P49642 420 aaKnown RBP18.94■□□□□ 0.62
CTSA-219ENST00000607841 DCAF5Q96JK2 942 aa18.94■□□□□ 0.62
CTSA-219ENST00000607841 PHACTR3Q96KR7 559 aa18.92■□□□□ 0.62
CTSA-219ENST00000607841 MRS2Q9HD23 443 aa18.92■□□□□ 0.62
CTSA-219ENST00000607841 SHANK3Q9BYB0 1731 aa18.91■□□□□ 0.62
CTSA-219ENST00000607841 PLSCR1O15162 318 aa18.91■□□□□ 0.62
CTSA-219ENST00000607841 DIEXFQ68CQ4 756 aaKnown RBP18.91■□□□□ 0.62
CTSA-219ENST00000607841 DEFB132Q7Z7B7 95 aa18.91■□□□□ 0.62
CTSA-219ENST00000607841 MAPK8IP3Q9UPT6 1336 aa18.91■□□□□ 0.62
CTSA-219ENST00000607841 ERVV-2B6SEH9 535 aa18.9■□□□□ 0.62
CTSA-219ENST00000607841 PTF1AQ7RTS3 328 aa18.9■□□□□ 0.62
CTSA-219ENST00000607841 GNAT3A8MTJ3 354 aa18.89■□□□□ 0.61
CTSA-219ENST00000607841 EN1Q05925 392 aaPredicted RBP18.89■□□□□ 0.61
CTSA-219ENST00000607841 MPRIPQ6WCQ1 1025 aa18.89■□□□□ 0.61
CTSA-219ENST00000607841 PLEKHF1Q96S99 279 aa18.89■□□□□ 0.61
CTSA-219ENST00000607841 TMOD3Q9NYL9 352 aa18.89■□□□□ 0.61
CTSA-219ENST00000607841 ADAMTS8Q9UP79 889 aa18.89■□□□□ 0.61
CTSA-219ENST00000607841 CABP4P57796 275 aa18.87■□□□□ 0.61
CTSA-219ENST00000607841 CCDC184Q52MB2 194 aa18.87■□□□□ 0.61
CTSA-219ENST00000607841 RTF1Q92541 710 aaKnown RBP18.87■□□□□ 0.61
CTSA-219ENST00000607841 CAMKK2Q96RR4 588 aa18.87■□□□□ 0.61
CTSA-219ENST00000607841 MAP3K5Q99683 1374 aa18.87■□□□□ 0.61
CTSA-219ENST00000607841 NHSQ6T4R5 1651 aa18.86■□□□□ 0.61
CTSA-219ENST00000607841 RUNDC1Q96C34 613 aa18.86■□□□□ 0.61
CTSA-219ENST00000607841 RNMTO43148 476 aaKnown RBP18.85■□□□□ 0.61
CTSA-219ENST00000607841 HTATSF1O43719 755 aaKnown RBP18.85■□□□□ 0.61
CTSA-219ENST00000607841 EZH2Q15910 746 aaKnown RBP18.85■□□□□ 0.61
CTSA-219ENST00000607841 PNISRQ8TF01 805 aaKnown RBP18.85■□□□□ 0.61
CTSA-219ENST00000607841 PIGBQ92521 554 aa18.85■□□□□ 0.61
CTSA-219ENST00000607841 KDM6AO15550 1401 aaPredicted RBP18.84■□□□□ 0.61
CTSA-219ENST00000607841 SBF2Q86WG5 1849 aa18.84■□□□□ 0.61
CTSA-219ENST00000607841 TNS1Q9HBL0 1735 aaKnown RBP18.84■□□□□ 0.61
CTSA-219ENST00000607841 NFE2L2Q16236 605 aa18.84■□□□□ 0.61
CTSA-219ENST00000607841 SMARCC1Q92922 1105 aaPredicted RBP18.84■□□□□ 0.61
CTSA-219ENST00000607841 LGR6Q9HBX8 967 aa18.84■□□□□ 0.61
CTSA-219ENST00000607841 CCDC146Q8IYE0 955 aa18.83■□□□□ 0.6
CTSA-219ENST00000607841 DOT1LQ8TEK3 1739 aa18.83■□□□□ 0.6
CTSA-219ENST00000607841 HMGB2P26583 209 aaKnown RBP18.82■□□□□ 0.6
CTSA-219ENST00000607841 NFATC2IPQ8NCF5 419 aa18.82■□□□□ 0.6
CTSA-219ENST00000607841 SLC52A2Q9HAB3 445 aa18.82■□□□□ 0.6
CTSA-219ENST00000607841 CCER2I3L3R5 266 aa18.81■□□□□ 0.6
CTSA-219ENST00000607841 TEFQ10587 303 aa18.81■□□□□ 0.6
CTSA-219ENST00000607841 TXNRD1Q16881 649 aa18.81■□□□□ 0.6
CTSA-219ENST00000607841 IL17REQ8NFR9 667 aa18.81■□□□□ 0.6
CTSA-219ENST00000607841 LMOD3Q0VAK6 560 aa18.8■□□□□ 0.6
CTSA-219ENST00000607841 SLC27A3Q5K4L6 730 aa18.8■□□□□ 0.6
CTSA-219ENST00000607841 TMPOP42166 694 aaKnown RBP18.79■□□□□ 0.6
CTSA-219ENST00000607841 RIPK4P57078 832 aa18.79■□□□□ 0.6
CTSA-219ENST00000607841 PALLDQ8WX93 1383 aa18.79■□□□□ 0.6
CTSA-219ENST00000607841 NBPF14Q5TI25 921 aa18.78■□□□□ 0.6
CTSA-219ENST00000607841 PROM2Q8N271 834 aa18.78■□□□□ 0.6
CTSA-219ENST00000607841 ATG3Q9NT62 314 aa18.78■□□□□ 0.6
CTSA-219ENST00000607841 ASAP1Q9ULH1 1129 aa18.78■□□□□ 0.6
CTSA-219ENST00000607841 CEMIPQ8WUJ3 1361 aa18.78■□□□□ 0.6
CTSA-219ENST00000607841 TOGARAM1Q9Y4F4 1720 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms