RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 CASC1Q6TDU7 716 aa15.37■□□□□ 0.05
MSH6-212ENST00000607272 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.37■□□□□ 0.05
MSH6-212ENST00000607272 KIAA1211Q6ZU35 1233 aa15.37■□□□□ 0.05
MSH6-212ENST00000607272 LMBRD1Q9NUN5 540 aa15.37■□□□□ 0.05
MSH6-212ENST00000607272 ST18O60284 1047 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 ZSCAN23Q3MJ62 389 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 YEATS2Q9ULM3 1422 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 ARHGEF40Q8TER5 1519 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 CAVIN1Q6NZI2 390 aaKnown RBP15.36■□□□□ 0.05
MSH6-212ENST00000607272 PDCL3Q9H2J4 239 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 KIF20BQ96Q89 1820 aa15.36■□□□□ 0.05
MSH6-212ENST00000607272 NCLP19338 710 aaKnown RBP15.35■□□□□ 0.05
MSH6-212ENST00000607272 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.35■□□□□ 0.05
MSH6-212ENST00000607272 IL13P35225 146 aa15.35■□□□□ 0.05
MSH6-212ENST00000607272 RPAP2Q8IXW5 612 aaPredicted RBP15.35■□□□□ 0.05
MSH6-212ENST00000607272 C8orf58Q8NAV2 365 aa15.35■□□□□ 0.05
MSH6-212ENST00000607272 ANKRD44Q8N8A2 993 aa15.34■□□□□ 0.05
MSH6-212ENST00000607272 REC8O95072 547 aa15.33■□□□□ 0.04
MSH6-212ENST00000607272 PDLIM2Q96JY6 352 aa15.33■□□□□ 0.04
MSH6-212ENST00000607272 NOL7Q9UMY1 257 aaKnown RBP15.33■□□□□ 0.04
MSH6-212ENST00000607272 ATP7BP35670 1465 aa15.33■□□□□ 0.04
MSH6-212ENST00000607272 FBLN1P23142 703 aa15.32■□□□□ 0.04
MSH6-212ENST00000607272 ZNF500O60304 480 aaPredicted RBP15.31■□□□□ 0.04
MSH6-212ENST00000607272 SDSP20132 328 aa15.31■□□□□ 0.04
MSH6-212ENST00000607272 ZMYND15Q9H091 742 aa15.31■□□□□ 0.04
MSH6-212ENST00000607272 PRPF40AO75400 957 aaKnown RBP15.31■□□□□ 0.04
MSH6-212ENST00000607272 C16orf71Q8IYS4 520 aaPredicted RBP15.31■□□□□ 0.04
MSH6-212ENST00000607272 KLHL34Q8N239 644 aa15.31■□□□□ 0.04
MSH6-212ENST00000607272 PKNOX2Q96KN3 472 aa15.31■□□□□ 0.04
MSH6-212ENST00000607272 RBSNQ9H1K0 784 aa15.31■□□□□ 0.04
MSH6-212ENST00000607272 RIMS2Q9UQ26 1411 aa15.3■□□□□ 0.04
MSH6-212ENST00000607272 CDK12Q9NYV4 1490 aaPredicted RBP15.3■□□□□ 0.04
MSH6-212ENST00000607272 PKP1Q13835 747 aa15.3■□□□□ 0.04
MSH6-212ENST00000607272 EMILIN1Q9Y6C2 1016 aa15.3■□□□□ 0.04
MSH6-212ENST00000607272 CPSF1Q10570 1443 aaKnown RBP15.3■□□□□ 0.04
MSH6-212ENST00000607272 AATKQ6ZMQ8 1374 aa15.3■□□□□ 0.04
MSH6-212ENST00000607272 MCM5P33992 734 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 PRIM1P49642 420 aaKnown RBP15.29■□□□□ 0.04
MSH6-212ENST00000607272 SPOCK2Q92563 424 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 TMEM131LA2VDJ0 1609 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 ATP10DQ9P241 1426 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 CEP85Q6P2H3 762 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 AK9Q5TCS8 1911 aa15.29■□□□□ 0.04
MSH6-212ENST00000607272 GPT2Q8TD30 523 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 KNDC1Q76NI1 1749 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 MAP2P11137 1827 aaKnown RBP15.28■□□□□ 0.04
MSH6-212ENST00000607272 EDC4Q6P2E9 1401 aaKnown RBP15.28■□□□□ 0.04
MSH6-212ENST00000607272 ALKQ9UM73 1620 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 ERC2O15083 957 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 LRSAM1Q6UWE0 723 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 ZGPATQ8N5A5 531 aaKnown RBP15.28■□□□□ 0.04
MSH6-212ENST00000607272 ZDHHC9Q9Y397 364 aa15.28■□□□□ 0.04
MSH6-212ENST00000607272 RAPGEF3O95398 923 aa15.27■□□□□ 0.04
MSH6-212ENST00000607272 CSPP1Q1MSJ5 1256 aa15.27■□□□□ 0.04
MSH6-212ENST00000607272 OTUD7AQ8TE49 926 aaPredicted RBP15.27■□□□□ 0.04
MSH6-212ENST00000607272 MBD3O95983 291 aa15.27■□□□□ 0.03
MSH6-212ENST00000607272 MAP7D2Q96T17 732 aa15.27■□□□□ 0.03
MSH6-212ENST00000607272 PTPRCP08575 1304 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 NEO1Q92859 1461 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 FAM83GA6ND36 823 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 MCM2P49736 904 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 PODXL2Q9NZ53 605 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 ZKSCAN5Q9Y2L8 839 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 DIP2CQ9Y2E4 1556 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 RTL1A6NKG5 1358 aa15.26■□□□□ 0.03
MSH6-212ENST00000607272 HMMRO75330 724 aa15.25■□□□□ 0.03
MSH6-212ENST00000607272 DLC1Q96QB1 1528 aa15.25■□□□□ 0.03
MSH6-212ENST00000607272 MYO5BQ9ULV0 1848 aa15.25■□□□□ 0.03
MSH6-212ENST00000607272 OSBPL3Q9H4L5 887 aa15.25■□□□□ 0.03
MSH6-212ENST00000607272 CCDC39Q9UFE4 941 aa15.25■□□□□ 0.03
MSH6-212ENST00000607272 COG3Q96JB2 828 aa15.24■□□□□ 0.03
MSH6-212ENST00000607272 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.24■□□□□ 0.03
MSH6-212ENST00000607272 RBM27Q9P2N5 1060 aaKnown RBP15.24■□□□□ 0.03
MSH6-212ENST00000607272 R3HCC1Q9Y3T6 440 aaKnown RBP15.24■□□□□ 0.03
MSH6-212ENST00000607272 KIAA0232Q92628 1395 aa15.24■□□□□ 0.03
MSH6-212ENST00000607272 RGS12O14924 1447 aa15.24■□□□□ 0.03
MSH6-212ENST00000607272 TMEM63CQ9P1W3 806 aa15.24■□□□□ 0.03
MSH6-212ENST00000607272 CHL1O00533 1208 aa15.23■□□□□ 0.03
MSH6-212ENST00000607272 SMARCA5O60264 1052 aaPredicted RBP15.23■□□□□ 0.03
MSH6-212ENST00000607272 DCTN1Q14203 1278 aa15.23■□□□□ 0.03
MSH6-212ENST00000607272 NME9Q86XW9 330 aa15.23■□□□□ 0.03
MSH6-212ENST00000607272 PREX1Q8TCU6 1659 aa15.23■□□□□ 0.03
MSH6-212ENST00000607272 WAPLQ7Z5K2 1190 aa15.23■□□□□ 0.03
MSH6-212ENST00000607272 DLG5Q8TDM6 1919 aa15.22■□□□□ 0.03
MSH6-212ENST00000607272 SYCE3A1L190 88 aa15.22■□□□□ 0.03
MSH6-212ENST00000607272 STAG3Q9UJ98 1225 aa15.22■□□□□ 0.03
MSH6-212ENST00000607272 MSH6P52701 1360 aa15.22■□□□□ 0.03
MSH6-212ENST00000607272 APBB1O00213 710 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 NEK4P51957 841 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 TMX3Q96JJ7 454 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 MEIS3Q99687 375 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 DCAF8L1A6NGE4 600 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 PDE1AP54750 535 aa15.21■□□□□ 0.03
MSH6-212ENST00000607272 XPCQ01831 940 aaPredicted RBP15.21■□□□□ 0.03
MSH6-212ENST00000607272 SYAP1Q96A49 352 aaPredicted RBP15.21■□□□□ 0.03
MSH6-212ENST00000607272 WASLO00401 505 aaPredicted RBP15.2■□□□□ 0.02
MSH6-212ENST00000607272 BRD1O95696 1058 aa15.2■□□□□ 0.02
MSH6-212ENST00000607272 MCCP23508 829 aa15.2■□□□□ 0.02
MSH6-212ENST00000607272 INTS4Q96HW7 963 aaKnown RBP15.2■□□□□ 0.02
MSH6-212ENST00000607272 CUL4AQ13619 759 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms