RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 TFCP2L1Q9NZI6 479 aa20.75■□□□□ 0.91
CTSA-216ENST00000607212 RTL1A6NKG5 1358 aa20.74■□□□□ 0.91
CTSA-216ENST00000607212 POLD1P28340 1107 aa20.74■□□□□ 0.91
CTSA-216ENST00000607212 KCNQ4P56696 695 aa20.74■□□□□ 0.91
CTSA-216ENST00000607212 RAPGEF4Q8WZA2 1011 aa20.74■□□□□ 0.91
CTSA-216ENST00000607212 KIF20BQ96Q89 1820 aa20.74■□□□□ 0.91
CTSA-216ENST00000607212 MSH5O43196 834 aa20.73■□□□□ 0.91
CTSA-216ENST00000607212 CDCA8Q53HL2 280 aa20.73■□□□□ 0.91
CTSA-216ENST00000607212 MEGF6O75095 1541 aa20.73■□□□□ 0.91
CTSA-216ENST00000607212 PELP1Q8IZL8 1130 aaKnown RBP20.72■□□□□ 0.91
CTSA-216ENST00000607212 FYB1O15117 783 aa20.71■□□□□ 0.91
CTSA-216ENST00000607212 TATP17735 454 aaPredicted RBP20.71■□□□□ 0.91
CTSA-216ENST00000607212 TRIM26Q12899 539 aaPredicted RBP20.71■□□□□ 0.91
CTSA-216ENST00000607212 AKT1S1Q96B36 256 aa20.71■□□□□ 0.91
CTSA-216ENST00000607212 SGIP1Q9BQI5 828 aa20.71■□□□□ 0.91
CTSA-216ENST00000607212 CCNL1Q9UK58 526 aaPredicted RBP20.71■□□□□ 0.91
CTSA-216ENST00000607212 SHANK3Q9BYB0 1731 aa20.7■□□□□ 0.9
CTSA-216ENST00000607212 GPR162Q16538 588 aa20.7■□□□□ 0.9
CTSA-216ENST00000607212 NBPF6Q5VWK0 638 aa20.7■□□□□ 0.9
CTSA-216ENST00000607212 NBPF4Q96M43 638 aa20.7■□□□□ 0.9
CTSA-216ENST00000607212 CHD4Q14839 1912 aa20.69■□□□□ 0.9
CTSA-216ENST00000607212 SLC16A10Q8TF71 515 aa20.69■□□□□ 0.9
CTSA-216ENST00000607212 QSER1Q2KHR3 1735 aa20.69■□□□□ 0.9
CTSA-216ENST00000607212 TUBGCP6Q96RT7 1819 aa20.69■□□□□ 0.9
CTSA-216ENST00000607212 PNPLA7Q6ZV29 1317 aa20.68■□□□□ 0.9
CTSA-216ENST00000607212 LY75O60449 1722 aa20.67■□□□□ 0.9
CTSA-216ENST00000607212 POLR3GLQ9BT43 218 aa20.67■□□□□ 0.9
CTSA-216ENST00000607212 CGNL1Q0VF96 1302 aa20.67■□□□□ 0.9
CTSA-216ENST00000607212 PPM1GO15355 546 aaPredicted RBP20.66■□□□□ 0.9
CTSA-216ENST00000607212 HSP90AB2PQ58FF8 381 aa20.66■□□□□ 0.9
CTSA-216ENST00000607212 FLT4P35916 1363 aa20.65■□□□□ 0.9
CTSA-216ENST00000607212 NSD2O96028 1365 aa20.64■□□□□ 0.89
CTSA-216ENST00000607212 PCDH11XQ9BZA7 1347 aa20.64■□□□□ 0.89
CTSA-216ENST00000607212 PCDH11YQ9BZA8 1340 aa20.64■□□□□ 0.89
CTSA-216ENST00000607212 ZNF784Q8NCA9 323 aaPredicted RBP20.64■□□□□ 0.89
CTSA-216ENST00000607212 NSD3Q9BZ95 1437 aa20.63■□□□□ 0.89
CTSA-216ENST00000607212 INSRP06213 1382 aa20.63■□□□□ 0.89
CTSA-216ENST00000607212 MAP3K5Q99683 1374 aa20.62■□□□□ 0.89
CTSA-216ENST00000607212 MPRIPQ6WCQ1 1025 aa20.62■□□□□ 0.89
CTSA-216ENST00000607212 MSL1Q68DK7 614 aa20.6■□□□□ 0.89
CTSA-216ENST00000607212 EMILIN1Q9Y6C2 1016 aa20.6■□□□□ 0.89
CTSA-216ENST00000607212 C5P01031 1676 aa20.59■□□□□ 0.89
CTSA-216ENST00000607212 KIF24Q5T7B8 1368 aa20.58■□□□□ 0.88
CTSA-216ENST00000607212 PALLDQ8WX93 1383 aa20.58■□□□□ 0.88
CTSA-216ENST00000607212 HMGB2P26583 209 aaKnown RBP20.57■□□□□ 0.88
CTSA-216ENST00000607212 COL23A1Q86Y22 540 aaPredicted RBP20.57■□□□□ 0.88
CTSA-216ENST00000607212 CARD14Q9BXL6 1004 aa20.57■□□□□ 0.88
CTSA-216ENST00000607212 PCGF6Q9BYE7 350 aa20.57■□□□□ 0.88
CTSA-216ENST00000607212 MAP2P11137 1827 aaKnown RBP20.56■□□□□ 0.88
CTSA-216ENST00000607212 ITGB4P16144 1822 aa20.56■□□□□ 0.88
CTSA-216ENST00000607212 NLGN2Q8NFZ4 835 aa20.56■□□□□ 0.88
CTSA-216ENST00000607212 COL24A1Q17RW2 1714 aa20.56■□□□□ 0.88
CTSA-216ENST00000607212 SMARCC1Q92922 1105 aaPredicted RBP20.55■□□□□ 0.88
CTSA-216ENST00000607212 AK7Q96M32 723 aa20.55■□□□□ 0.88
CTSA-216ENST00000607212 SPG7Q9UQ90 795 aa20.55■□□□□ 0.88
CTSA-216ENST00000607212 CYP27B1O15528 508 aa20.54■□□□□ 0.88
CTSA-216ENST00000607212 TAF1LQ8IZX4 1826 aa20.53■□□□□ 0.88
CTSA-216ENST00000607212 TNNT2P45379 298 aaPredicted RBP20.53■□□□□ 0.88
CTSA-216ENST00000607212 FLAD1Q8NFF5 587 aa20.53■□□□□ 0.88
CTSA-216ENST00000607212 PHF14O94880 888 aa20.52■□□□□ 0.88
CTSA-216ENST00000607212 PKD1L3Q7Z443 1732 aa20.52■□□□□ 0.88
CTSA-216ENST00000607212 TOGARAM1Q9Y4F4 1720 aa20.52■□□□□ 0.88
CTSA-216ENST00000607212 SENP3-EIF4A1A0A087X0R7 540 aa20.5■□□□□ 0.87
CTSA-216ENST00000607212 C4BP0C0L5 1744 aa20.5■□□□□ 0.87
CTSA-216ENST00000607212 GRIN3BO60391 1043 aa20.49■□□□□ 0.87
CTSA-216ENST00000607212 TMOD3Q9NYL9 352 aa20.49■□□□□ 0.87
CTSA-216ENST00000607212 TIMELESSQ9UNS1 1208 aa20.49■□□□□ 0.87
CTSA-216ENST00000607212 PIGBQ92521 554 aa20.48■□□□□ 0.87
CTSA-216ENST00000607212 EYA1Q99502 592 aa20.48■□□□□ 0.87
CTSA-216ENST00000607212 WASHC2AQ641Q2 1341 aa20.48■□□□□ 0.87
CTSA-216ENST00000607212 ANKRD26Q9UPS8 1709 aa20.47■□□□□ 0.87
CTSA-216ENST00000607212 GIGYF1O75420 1035 aaPredicted RBP20.47■□□□□ 0.87
CTSA-216ENST00000607212 YBX3P16989 372 aaKnown RBP eCLIP20.45■□□□□ 0.86
CTSA-216ENST00000607212 C1QTNF8P60827 252 aa20.45■□□□□ 0.86
CTSA-216ENST00000607212 IFNL2Q8IZJ0 200 aa20.45■□□□□ 0.86
CTSA-216ENST00000607212 POLKQ9UBT6 870 aa20.45■□□□□ 0.86
CTSA-216ENST00000607212 LOC102724428A0A0B4J2F2 783 aa20.44■□□□□ 0.86
CTSA-216ENST00000607212 SIK1P57059 783 aa20.44■□□□□ 0.86
CTSA-216ENST00000607212 SMIM5Q71RC9 77 aa20.44■□□□□ 0.86
CTSA-216ENST00000607212 UBR3Q6ZT12 1888 aa20.43■□□□□ 0.86
CTSA-216ENST00000607212 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.43■□□□□ 0.86
CTSA-216ENST00000607212 ATP6V1AP38606 617 aa20.43■□□□□ 0.86
CTSA-216ENST00000607212 NKX1-1Q15270 411 aaPredicted RBP20.43■□□□□ 0.86
CTSA-216ENST00000607212 CD2APQ9Y5K6 639 aa20.43■□□□□ 0.86
CTSA-216ENST00000607212 GNPATO15228 680 aa20.42■□□□□ 0.86
CTSA-216ENST00000607212 PHKG2P15735 406 aa20.42■□□□□ 0.86
CTSA-216ENST00000607212 EIF4A2Q14240 407 aaKnown RBP20.42■□□□□ 0.86
CTSA-216ENST00000607212 WWC3Q9ULE0 1092 aa20.42■□□□□ 0.86
CTSA-216ENST00000607212 NCAPD2Q15021 1401 aa20.42■□□□□ 0.86
CTSA-216ENST00000607212 EIF4G2P78344 907 aaKnown RBP eCLIP20.41■□□□□ 0.86
CTSA-216ENST00000607212 LINC00116Q8NCU8 138 aa20.41■□□□□ 0.86
CTSA-216ENST00000607212 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.41■□□□□ 0.86
CTSA-216ENST00000607212 ASAP1Q9ULH1 1129 aa20.41■□□□□ 0.86
CTSA-216ENST00000607212 SSFA2P28290 1259 aa20.4■□□□□ 0.86
CTSA-216ENST00000607212 CLSPNQ9HAW4 1339 aa20.4■□□□□ 0.86
CTSA-216ENST00000607212 RBM42Q9BTD8 480 aaKnown RBP20.39■□□□□ 0.85
CTSA-216ENST00000607212 PANK3Q9H999 370 aa20.39■□□□□ 0.85
CTSA-216ENST00000607212 UTRNP46939 3433 aa20.38■□□□□ 0.85
CTSA-216ENST00000607212 HSPA5P11021 654 aaKnown RBP20.38■□□□□ 0.85
CTSA-216ENST00000607212 AMIGO3Q86WK7 504 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms