RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 YY1P25490 414 aa21.96■■□□□ 1.11
SHKBP1-228ENST00000602239 RTL1A6NKG5 1358 aa21.96■■□□□ 1.11
SHKBP1-228ENST00000602239 AKT1S1Q96B36 256 aa21.95■■□□□ 1.1
SHKBP1-228ENST00000602239 PCGF6Q9BYE7 350 aa21.95■■□□□ 1.1
SHKBP1-228ENST00000602239 MYOM1P52179 1685 aa21.95■■□□□ 1.1
SHKBP1-228ENST00000602239 FHDC1Q9C0D6 1143 aaPredicted RBP21.94■■□□□ 1.1
SHKBP1-228ENST00000602239 DCAF8L1A6NGE4 600 aa21.93■■□□□ 1.1
SHKBP1-228ENST00000602239 NSD2O96028 1365 aa21.93■■□□□ 1.1
SHKBP1-228ENST00000602239 SYT17Q9BSW7 474 aa21.93■■□□□ 1.1
SHKBP1-228ENST00000602239 SHANK3Q9BYB0 1731 aa21.92■■□□□ 1.1
SHKBP1-228ENST00000602239 SLC27A3Q5K4L6 730 aa21.92■■□□□ 1.1
SHKBP1-228ENST00000602239 TIMELESSQ9UNS1 1208 aa21.92■■□□□ 1.1
SHKBP1-228ENST00000602239 INSRP06213 1382 aa21.91■■□□□ 1.1
SHKBP1-228ENST00000602239 RAPGEF4Q8WZA2 1011 aa21.91■■□□□ 1.1
SHKBP1-228ENST00000602239 EMILIN1Q9Y6C2 1016 aa21.91■■□□□ 1.1
SHKBP1-228ENST00000602239 NSD3Q9BZ95 1437 aa21.89■■□□□ 1.1
SHKBP1-228ENST00000602239 DOT1LQ8TEK3 1739 aa21.89■■□□□ 1.1
SHKBP1-228ENST00000602239 ARXQ96QS3 562 aa21.89■■□□□ 1.09
SHKBP1-228ENST00000602239 FLT4P35916 1363 aa21.88■■□□□ 1.09
SHKBP1-228ENST00000602239 CGNL1Q0VF96 1302 aa21.88■■□□□ 1.09
SHKBP1-228ENST00000602239 KIF20BQ96Q89 1820 aa21.88■■□□□ 1.09
SHKBP1-228ENST00000602239 TATP17735 454 aaPredicted RBP21.88■■□□□ 1.09
SHKBP1-228ENST00000602239 SMG6Q86US8 1419 aaKnown RBP21.88■■□□□ 1.09
SHKBP1-228ENST00000602239 PNPLA7Q6ZV29 1317 aa21.87■■□□□ 1.09
SHKBP1-228ENST00000602239 TFCP2L1Q9NZI6 479 aa21.87■■□□□ 1.09
SHKBP1-228ENST00000602239 PPM1GO15355 546 aaPredicted RBP21.86■■□□□ 1.09
SHKBP1-228ENST00000602239 KIF24Q5T7B8 1368 aa21.86■■□□□ 1.09
SHKBP1-228ENST00000602239 CCNL1Q9UK58 526 aaPredicted RBP21.85■■□□□ 1.09
SHKBP1-228ENST00000602239 UTRNP46939 3433 aa21.84■■□□□ 1.09
SHKBP1-228ENST00000602239 CLSPNQ9HAW4 1339 aa21.84■■□□□ 1.09
SHKBP1-228ENST00000602239 CYP27B1O15528 508 aa21.84■■□□□ 1.09
SHKBP1-228ENST00000602239 POLR3GLQ9BT43 218 aa21.84■■□□□ 1.09
SHKBP1-228ENST00000602239 SLC16A10Q8TF71 515 aa21.83■■□□□ 1.09
SHKBP1-228ENST00000602239 LY75O60449 1722 aa21.83■■□□□ 1.08
SHKBP1-228ENST00000602239 PCDH11XQ9BZA7 1347 aa21.81■■□□□ 1.08
SHKBP1-228ENST00000602239 PCDH11YQ9BZA8 1340 aa21.81■■□□□ 1.08
SHKBP1-228ENST00000602239 MPRIPQ6WCQ1 1025 aa21.8■■□□□ 1.08
SHKBP1-228ENST00000602239 POLKQ9UBT6 870 aa21.8■■□□□ 1.08
SHKBP1-228ENST00000602239 WASHC2AQ641Q2 1341 aa21.8■■□□□ 1.08
SHKBP1-228ENST00000602239 TUBGCP6Q96RT7 1819 aa21.79■■□□□ 1.08
SHKBP1-228ENST00000602239 EYA1Q99502 592 aa21.79■■□□□ 1.08
SHKBP1-228ENST00000602239 QSER1Q2KHR3 1735 aa21.78■■□□□ 1.08
SHKBP1-228ENST00000602239 COL23A1Q86Y22 540 aaPredicted RBP21.78■■□□□ 1.08
SHKBP1-228ENST00000602239 MAP3K5Q99683 1374 aa21.77■■□□□ 1.08
SHKBP1-228ENST00000602239 HSPA5P11021 654 aaKnown RBP21.77■■□□□ 1.08
SHKBP1-228ENST00000602239 POLD1P28340 1107 aa21.77■■□□□ 1.08
SHKBP1-228ENST00000602239 TNNT2P45379 298 aaPredicted RBP21.77■■□□□ 1.08
SHKBP1-228ENST00000602239 MAP2P11137 1827 aaKnown RBP21.76■■□□□ 1.07
SHKBP1-228ENST00000602239 MSH5O43196 834 aa21.76■■□□□ 1.07
SHKBP1-228ENST00000602239 KLHL34Q8N239 644 aa21.76■■□□□ 1.07
SHKBP1-228ENST00000602239 NCAPD2Q15021 1401 aa21.75■■□□□ 1.07
SHKBP1-228ENST00000602239 EIF4G2P78344 907 aaKnown RBP eCLIP21.74■■□□□ 1.07
SHKBP1-228ENST00000602239 NKX1-1Q15270 411 aaPredicted RBP21.74■■□□□ 1.07
SHKBP1-228ENST00000602239 PIGBQ92521 554 aa21.74■■□□□ 1.07
SHKBP1-228ENST00000602239 PALLDQ8WX93 1383 aa21.74■■□□□ 1.07
SHKBP1-228ENST00000602239 COL24A1Q17RW2 1714 aa21.73■■□□□ 1.07
SHKBP1-228ENST00000602239 PANK3Q9H999 370 aa21.73■■□□□ 1.07
SHKBP1-228ENST00000602239 SPG7Q9UQ90 795 aa21.73■■□□□ 1.07
SHKBP1-228ENST00000602239 ANKRD26Q9UPS8 1709 aa21.72■■□□□ 1.07
SHKBP1-228ENST00000602239 TOGARAM1Q9Y4F4 1720 aa21.72■■□□□ 1.07
SHKBP1-228ENST00000602239 EIF4A2Q14240 407 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-228ENST00000602239 NLGN2Q8NFZ4 835 aa21.72■■□□□ 1.07
SHKBP1-228ENST00000602239 GPR162Q16538 588 aa21.71■■□□□ 1.07
SHKBP1-228ENST00000602239 MSL1Q68DK7 614 aa21.71■■□□□ 1.07
SHKBP1-228ENST00000602239 SMIM5Q71RC9 77 aa21.71■■□□□ 1.07
SHKBP1-228ENST00000602239 ZNF784Q8NCA9 323 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-228ENST00000602239 PKD1L3Q7Z443 1732 aa21.71■■□□□ 1.07
SHKBP1-228ENST00000602239 AMIGO3Q86WK7 504 aa21.7■■□□□ 1.06
SHKBP1-228ENST00000602239 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
SHKBP1-228ENST00000602239 ITGB4P16144 1822 aa21.7■■□□□ 1.06
SHKBP1-228ENST00000602239 GOLGB1Q14789 3259 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-228ENST00000602239 SMARCC1Q92922 1105 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-228ENST00000602239 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.69■■□□□ 1.06
SHKBP1-228ENST00000602239 C5P01031 1676 aa21.68■■□□□ 1.06
SHKBP1-228ENST00000602239 PHKG2P15735 406 aa21.67■■□□□ 1.06
SHKBP1-228ENST00000602239 PELP1Q8IZL8 1130 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-228ENST00000602239 ASAP1Q9ULH1 1129 aa21.67■■□□□ 1.06
SHKBP1-228ENST00000602239 TAF1LQ8IZX4 1826 aa21.66■■□□□ 1.06
SHKBP1-228ENST00000602239 IFNL2Q8IZJ0 200 aa21.66■■□□□ 1.06
SHKBP1-228ENST00000602239 LOC102724428A0A0B4J2F2 783 aa21.64■■□□□ 1.05
SHKBP1-228ENST00000602239 SIK1P57059 783 aa21.64■■□□□ 1.05
SHKBP1-228ENST00000602239 FLAD1Q8NFF5 587 aa21.64■■□□□ 1.05
SHKBP1-228ENST00000602239 TMOD3Q9NYL9 352 aa21.64■■□□□ 1.05
SHKBP1-228ENST00000602239 CHD4Q14839 1912 aa21.64■■□□□ 1.05
SHKBP1-228ENST00000602239 LINC00116Q8NCU8 138 aa21.63■■□□□ 1.05
SHKBP1-228ENST00000602239 AK7Q96M32 723 aa21.63■■□□□ 1.05
SHKBP1-228ENST00000602239 IGSF1Q8N6C5 1336 aa21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 PHF14O94880 888 aa21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 HMGB2P26583 209 aaKnown RBP21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 ITPK1Q13572 414 aa21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 ATG3Q9NT62 314 aa21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 C4BP0C0L5 1744 aa21.62■■□□□ 1.05
SHKBP1-228ENST00000602239 YBX3P16989 372 aaKnown RBP eCLIP21.61■■□□□ 1.05
SHKBP1-228ENST00000602239 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.6■■□□□ 1.05
SHKBP1-228ENST00000602239 MORC1Q86VD1 984 aa21.6■■□□□ 1.05
SHKBP1-228ENST00000602239 ATP6V1AP38606 617 aa21.58■■□□□ 1.05
SHKBP1-228ENST00000602239 AEBP1Q8IUX7 1158 aa21.57■■□□□ 1.04
SHKBP1-228ENST00000602239 CD2APQ9Y5K6 639 aa21.57■■□□□ 1.04
SHKBP1-228ENST00000602239 UBR3Q6ZT12 1888 aa21.56■■□□□ 1.04
SHKBP1-228ENST00000602239 SSFA2P28290 1259 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms