RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 SMG6Q86US8 1419 aaKnown RBP18.33■□□□□ 0.53
RPS28-204ENST00000602140 HSP90AB2PQ58FF8 381 aa18.33■□□□□ 0.52
RPS28-204ENST00000602140 SLC27A3Q5K4L6 730 aa18.33■□□□□ 0.52
RPS28-204ENST00000602140 SGIP1Q9BQI5 828 aa18.33■□□□□ 0.52
RPS28-204ENST00000602140 DOT1LQ8TEK3 1739 aa18.32■□□□□ 0.52
RPS28-204ENST00000602140 SHANK3Q9BYB0 1731 aa18.32■□□□□ 0.52
RPS28-204ENST00000602140 RAPGEF4Q8WZA2 1011 aa18.32■□□□□ 0.52
RPS28-204ENST00000602140 CARD14Q9BXL6 1004 aa18.32■□□□□ 0.52
RPS28-204ENST00000602140 FHDC1Q9C0D6 1143 aaPredicted RBP18.32■□□□□ 0.52
RPS28-204ENST00000602140 KIF20BQ96Q89 1820 aa18.32■□□□□ 0.52
RPS28-204ENST00000602140 KCNQ4P56696 695 aa18.31■□□□□ 0.52
RPS28-204ENST00000602140 AKT1S1Q96B36 256 aa18.31■□□□□ 0.52
RPS28-204ENST00000602140 SYT17Q9BSW7 474 aa18.31■□□□□ 0.52
RPS28-204ENST00000602140 TIMELESSQ9UNS1 1208 aa18.31■□□□□ 0.52
RPS28-204ENST00000602140 NSD2O96028 1365 aa18.3■□□□□ 0.52
RPS28-204ENST00000602140 INSRP06213 1382 aa18.3■□□□□ 0.52
RPS28-204ENST00000602140 FLT4P35916 1363 aa18.3■□□□□ 0.52
RPS28-204ENST00000602140 CGNL1Q0VF96 1302 aa18.3■□□□□ 0.52
RPS28-204ENST00000602140 NSD3Q9BZ95 1437 aa18.3■□□□□ 0.52
RPS28-204ENST00000602140 TATP17735 454 aaPredicted RBP18.29■□□□□ 0.52
RPS28-204ENST00000602140 ARXQ96QS3 562 aa18.29■□□□□ 0.52
RPS28-204ENST00000602140 PCGF6Q9BYE7 350 aa18.29■□□□□ 0.52
RPS28-204ENST00000602140 KIF24Q5T7B8 1368 aa18.29■□□□□ 0.52
RPS28-204ENST00000602140 TFCP2L1Q9NZI6 479 aa18.27■□□□□ 0.52
RPS28-204ENST00000602140 EMILIN1Q9Y6C2 1016 aa18.27■□□□□ 0.52
RPS28-204ENST00000602140 PNPLA7Q6ZV29 1317 aa18.26■□□□□ 0.51
RPS28-204ENST00000602140 CLSPNQ9HAW4 1339 aa18.26■□□□□ 0.51
RPS28-204ENST00000602140 SLC16A10Q8TF71 515 aa18.26■□□□□ 0.51
RPS28-204ENST00000602140 CCNL1Q9UK58 526 aaPredicted RBP18.26■□□□□ 0.51
RPS28-204ENST00000602140 LY75O60449 1722 aa18.26■□□□□ 0.51
RPS28-204ENST00000602140 PPM1GO15355 546 aaPredicted RBP18.25■□□□□ 0.51
RPS28-204ENST00000602140 PCDH11XQ9BZA7 1347 aa18.24■□□□□ 0.51
RPS28-204ENST00000602140 PCDH11YQ9BZA8 1340 aa18.24■□□□□ 0.51
RPS28-204ENST00000602140 QSER1Q2KHR3 1735 aa18.24■□□□□ 0.51
RPS28-204ENST00000602140 POLR3GLQ9BT43 218 aa18.24■□□□□ 0.51
RPS28-204ENST00000602140 UTRNP46939 3433 aa18.23■□□□□ 0.51
RPS28-204ENST00000602140 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
RPS28-204ENST00000602140 CYP27B1O15528 508 aa18.22■□□□□ 0.51
RPS28-204ENST00000602140 POLD1P28340 1107 aa18.22■□□□□ 0.51
RPS28-204ENST00000602140 TUBGCP6Q96RT7 1819 aa18.21■□□□□ 0.51
RPS28-204ENST00000602140 MPRIPQ6WCQ1 1025 aa18.2■□□□□ 0.5
RPS28-204ENST00000602140 KLHL34Q8N239 644 aa18.2■□□□□ 0.5
RPS28-204ENST00000602140 WASHC2AQ641Q2 1341 aa18.2■□□□□ 0.5
RPS28-204ENST00000602140 MSH5O43196 834 aa18.19■□□□□ 0.5
RPS28-204ENST00000602140 ANKRD26Q9UPS8 1709 aa18.18■□□□□ 0.5
RPS28-204ENST00000602140 NCAPD2Q15021 1401 aa18.18■□□□□ 0.5
RPS28-204ENST00000602140 COL23A1Q86Y22 540 aaPredicted RBP18.18■□□□□ 0.5
RPS28-204ENST00000602140 POLKQ9UBT6 870 aa18.18■□□□□ 0.5
RPS28-204ENST00000602140 PALLDQ8WX93 1383 aa18.17■□□□□ 0.5
RPS28-204ENST00000602140 EYA1Q99502 592 aa18.17■□□□□ 0.5
RPS28-204ENST00000602140 SPG7Q9UQ90 795 aa18.17■□□□□ 0.5
RPS28-204ENST00000602140 COL24A1Q17RW2 1714 aa18.17■□□□□ 0.5
RPS28-204ENST00000602140 PKD1L3Q7Z443 1732 aa18.17■□□□□ 0.5
RPS28-204ENST00000602140 TOGARAM1Q9Y4F4 1720 aa18.16■□□□□ 0.5
RPS28-204ENST00000602140 TNNT2P45379 298 aaPredicted RBP18.16■□□□□ 0.5
RPS28-204ENST00000602140 EIF4G2P78344 907 aaKnown RBP eCLIP18.16■□□□□ 0.5
RPS28-204ENST00000602140 MAP2P11137 1827 aaKnown RBP18.16■□□□□ 0.5
RPS28-204ENST00000602140 HSPA5P11021 654 aaKnown RBP18.15■□□□□ 0.5
RPS28-204ENST00000602140 NKX1-1Q15270 411 aaPredicted RBP18.15■□□□□ 0.5
RPS28-204ENST00000602140 GPR162Q16538 588 aa18.15■□□□□ 0.5
RPS28-204ENST00000602140 C5P01031 1676 aa18.15■□□□□ 0.5
RPS28-204ENST00000602140 HMGB2P26583 209 aaKnown RBP18.14■□□□□ 0.49
RPS28-204ENST00000602140 ZNF784Q8NCA9 323 aaPredicted RBP18.14■□□□□ 0.49
RPS28-204ENST00000602140 PIGBQ92521 554 aa18.14■□□□□ 0.49
RPS28-204ENST00000602140 SMARCC1Q92922 1105 aaPredicted RBP18.14■□□□□ 0.49
RPS28-204ENST00000602140 MSL1Q68DK7 614 aa18.13■□□□□ 0.49
RPS28-204ENST00000602140 NLGN2Q8NFZ4 835 aa18.13■□□□□ 0.49
RPS28-204ENST00000602140 ITGB4P16144 1822 aa18.12■□□□□ 0.49
RPS28-204ENST00000602140 EIF4A2Q14240 407 aaKnown RBP18.12■□□□□ 0.49
RPS28-204ENST00000602140 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
RPS28-204ENST00000602140 PANK3Q9H999 370 aa18.12■□□□□ 0.49
RPS28-204ENST00000602140 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.12■□□□□ 0.49
RPS28-204ENST00000602140 FLAD1Q8NFF5 587 aa18.11■□□□□ 0.49
RPS28-204ENST00000602140 CCER1Q8TC90 406 aaPredicted RBP18.11■□□□□ 0.49
RPS28-204ENST00000602140 GOLGB1Q14789 3259 aaKnown RBP18.1■□□□□ 0.49
RPS28-204ENST00000602140 TAF1LQ8IZX4 1826 aa18.1■□□□□ 0.49
RPS28-204ENST00000602140 IFNL2Q8IZJ0 200 aa18.1■□□□□ 0.49
RPS28-204ENST00000602140 CHD4Q14839 1912 aa18.1■□□□□ 0.49
RPS28-204ENST00000602140 PHKG2P15735 406 aa18.09■□□□□ 0.49
RPS28-204ENST00000602140 AK7Q96M32 723 aa18.09■□□□□ 0.49
RPS28-204ENST00000602140 TMOD3Q9NYL9 352 aa18.09■□□□□ 0.49
RPS28-204ENST00000602140 C4BP0C0L5 1744 aa18.09■□□□□ 0.49
RPS28-204ENST00000602140 AMIGO3Q86WK7 504 aa18.08■□□□□ 0.48
RPS28-204ENST00000602140 LOC102724428A0A0B4J2F2 783 aa18.07■□□□□ 0.48
RPS28-204ENST00000602140 SIK1P57059 783 aa18.07■□□□□ 0.48
RPS28-204ENST00000602140 SMIM5Q71RC9 77 aa18.07■□□□□ 0.48
RPS28-204ENST00000602140 ASAP1Q9ULH1 1129 aa18.07■□□□□ 0.48
RPS28-204ENST00000602140 IGSF1Q8N6C5 1336 aa18.06■□□□□ 0.48
RPS28-204ENST00000602140 PHF14O94880 888 aa18.06■□□□□ 0.48
RPS28-204ENST00000602140 LINC00116Q8NCU8 138 aa18.06■□□□□ 0.48
RPS28-204ENST00000602140 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.04■□□□□ 0.48
RPS28-204ENST00000602140 MORC1Q86VD1 984 aa18.04■□□□□ 0.48
RPS28-204ENST00000602140 PLEKHG2Q9H7P9 1386 aa18.04■□□□□ 0.48
RPS28-204ENST00000602140 YBX3P16989 372 aaKnown RBP eCLIP18.03■□□□□ 0.487e-19■□□□□ 10.7
RPS28-204ENST00000602140 ATP6V1AP38606 617 aa18.03■□□□□ 0.48
RPS28-204ENST00000602140 ITPK1Q13572 414 aa18.03■□□□□ 0.48
RPS28-204ENST00000602140 ATG3Q9NT62 314 aa18.03■□□□□ 0.48
RPS28-204ENST00000602140 UBR3Q6ZT12 1888 aa18.03■□□□□ 0.48
RPS28-204ENST00000602140 SSFA2P28290 1259 aa18.02■□□□□ 0.48
RPS28-204ENST00000602140 CD2APQ9Y5K6 639 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms