RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 TATP17735 454 aaPredicted RBP13.36□□□□□ -0.27
VRK3-224ENST00000601849 ZNF827Q17R98 1081 aa13.36□□□□□ -0.27
VRK3-224ENST00000601849 MYOM1P52179 1685 aa13.36□□□□□ -0.27
VRK3-224ENST00000601849 USP47Q96K76 1375 aa13.35□□□□□ -0.27
VRK3-224ENST00000601849 MAP3K5Q99683 1374 aa13.35□□□□□ -0.27
VRK3-224ENST00000601849 FAM208AQ9UK61 1670 aaKnown RBP13.35□□□□□ -0.27
VRK3-224ENST00000601849 ZNF784Q8NCA9 323 aaPredicted RBP13.35□□□□□ -0.27
VRK3-224ENST00000601849 CCNL1Q9UK58 526 aaPredicted RBP13.35□□□□□ -0.27
VRK3-224ENST00000601849 BTAF1O14981 1849 aa13.34□□□□□ -0.27
VRK3-224ENST00000601849 RTL1A6NKG5 1358 aa13.34□□□□□ -0.27
VRK3-224ENST00000601849 FYB1O15117 783 aa13.34□□□□□ -0.27
VRK3-224ENST00000601849 PELP1Q8IZL8 1130 aaKnown RBP13.34□□□□□ -0.27
VRK3-224ENST00000601849 GGNBP2Q9H3C7 697 aa13.34□□□□□ -0.27
VRK3-224ENST00000601849 RRS1Q15050 365 aaKnown RBP13.33□□□□□ -0.28
VRK3-224ENST00000601849 FLAD1Q8NFF5 587 aa13.33□□□□□ -0.28
VRK3-224ENST00000601849 FBLN1P23142 703 aa13.32□□□□□ -0.28
VRK3-224ENST00000601849 NBPF6Q5VWK0 638 aa13.32□□□□□ -0.28
VRK3-224ENST00000601849 NBPF4Q96M43 638 aa13.32□□□□□ -0.28
VRK3-224ENST00000601849 PNPLA7Q6ZV29 1317 aa13.32□□□□□ -0.28
VRK3-224ENST00000601849 GRIN3BO60391 1043 aa13.31□□□□□ -0.28
VRK3-224ENST00000601849 PCDH11XQ9BZA7 1347 aa13.31□□□□□ -0.28
VRK3-224ENST00000601849 PCDH11YQ9BZA8 1340 aa13.31□□□□□ -0.28
VRK3-224ENST00000601849 KCNQ4P56696 695 aa13.3□□□□□ -0.28
VRK3-224ENST00000601849 PAPPAQ13219 1627 aa13.3□□□□□ -0.28
VRK3-224ENST00000601849 INSRP06213 1382 aa13.3□□□□□ -0.28
VRK3-224ENST00000601849 KIF24Q5T7B8 1368 aa13.3□□□□□ -0.28
VRK3-224ENST00000601849 HSP90AB2PQ58FF8 381 aa13.29□□□□□ -0.28
VRK3-224ENST00000601849 MPRIPQ6WCQ1 1025 aa13.29□□□□□ -0.28
VRK3-224ENST00000601849 USHBP1Q8N6Y0 703 aa13.29□□□□□ -0.28
VRK3-224ENST00000601849 SMARCC1Q92922 1105 aaPredicted RBP13.29□□□□□ -0.28
VRK3-224ENST00000601849 GOLGB1Q14789 3259 aaKnown RBP13.29□□□□□ -0.28
VRK3-224ENST00000601849 TRIM26Q12899 539 aaPredicted RBP13.28□□□□□ -0.28
VRK3-224ENST00000601849 SPG7Q9UQ90 795 aa13.28□□□□□ -0.28
VRK3-224ENST00000601849 FLT4P35916 1363 aa13.28□□□□□ -0.28
VRK3-224ENST00000601849 PPM1GO15355 546 aaPredicted RBP13.27□□□□□ -0.29
VRK3-224ENST00000601849 C1QTNF8P60827 252 aa13.27□□□□□ -0.29
VRK3-224ENST00000601849 TIMELESSQ9UNS1 1208 aa13.27□□□□□ -0.29
VRK3-224ENST00000601849 MEGF6O75095 1541 aa13.26□□□□□ -0.29
VRK3-224ENST00000601849 GIGYF1O75420 1035 aaPredicted RBP13.26□□□□□ -0.29
VRK3-224ENST00000601849 COL23A1Q86Y22 540 aaPredicted RBP13.26□□□□□ -0.29
VRK3-224ENST00000601849 AK7Q96M32 723 aa13.26□□□□□ -0.29
VRK3-224ENST00000601849 CHD4Q14839 1912 aa13.25□□□□□ -0.29
VRK3-224ENST00000601849 QSER1Q2KHR3 1735 aa13.25□□□□□ -0.29
VRK3-224ENST00000601849 NSD2O96028 1365 aa13.25□□□□□ -0.29
VRK3-224ENST00000601849 SENP3-EIF4A1A0A087X0R7 540 aa13.25□□□□□ -0.29
VRK3-224ENST00000601849 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
VRK3-224ENST00000601849 CD2APQ9Y5K6 639 aa13.24□□□□□ -0.29
VRK3-224ENST00000601849 PALLDQ8WX93 1383 aa13.23□□□□□ -0.29
VRK3-224ENST00000601849 NLGN2Q8NFZ4 835 aa13.23□□□□□ -0.29
VRK3-224ENST00000601849 NSD3Q9BZ95 1437 aa13.22□□□□□ -0.29
VRK3-224ENST00000601849 LY75O60449 1722 aa13.22□□□□□ -0.29
VRK3-224ENST00000601849 MSL1Q68DK7 614 aa13.22□□□□□ -0.29
VRK3-224ENST00000601849 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.22□□□□□ -0.29
VRK3-224ENST00000601849 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
VRK3-224ENST00000601849 WASHC2AQ641Q2 1341 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 CYP27B1O15528 508 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
VRK3-224ENST00000601849 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 POLR3GLQ9BT43 218 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 CARD14Q9BXL6 1004 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 EMILIN1Q9Y6C2 1016 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 RGPD2P0DJD1 1756 aa13.21□□□□□ -0.29
VRK3-224ENST00000601849 PIGBQ92521 554 aa13.2□□□□□ -0.3
VRK3-224ENST00000601849 PHF14O94880 888 aa13.19□□□□□ -0.3
VRK3-224ENST00000601849 SSFA2P28290 1259 aa13.19□□□□□ -0.3
VRK3-224ENST00000601849 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.18□□□□□ -0.3
VRK3-224ENST00000601849 LOC102724428A0A0B4J2F2 783 aa13.18□□□□□ -0.3
VRK3-224ENST00000601849 SIK1P57059 783 aa13.18□□□□□ -0.3
VRK3-224ENST00000601849 EYA1Q99502 592 aa13.18□□□□□ -0.3
VRK3-224ENST00000601849 COL24A1Q17RW2 1714 aa13.18□□□□□ -0.3
VRK3-224ENST00000601849 KIF20BQ96Q89 1820 aa13.18□□□□□ -0.3
VRK3-224ENST00000601849 SHANK3Q9BYB0 1731 aa13.17□□□□□ -0.3
VRK3-224ENST00000601849 HSP90AB1P08238 724 aaKnown RBP13.17□□□□□ -0.3
VRK3-224ENST00000601849 YBX3P16989 372 aaKnown RBP eCLIP13.17□□□□□ -0.3
VRK3-224ENST00000601849 ATP6V1AP38606 617 aa13.17□□□□□ -0.3
VRK3-224ENST00000601849 GPBP1L1Q9HC44 474 aaPredicted RBP13.16□□□□□ -0.3
VRK3-224ENST00000601849 POLKQ9UBT6 870 aa13.16□□□□□ -0.3
VRK3-224ENST00000601849 CLSPNQ9HAW4 1339 aa13.15□□□□□ -0.3
VRK3-224ENST00000601849 C5P01031 1676 aa13.15□□□□□ -0.3
VRK3-224ENST00000601849 PHKG2P15735 406 aa13.15□□□□□ -0.3
VRK3-224ENST00000601849 TNNT2P45379 298 aaPredicted RBP13.15□□□□□ -0.3
VRK3-224ENST00000601849 TRAPPC3LQ5T215 181 aa13.15□□□□□ -0.3
VRK3-224ENST00000601849 TUBGCP6Q96RT7 1819 aa13.15□□□□□ -0.3
VRK3-224ENST00000601849 ERVV-2B6SEH9 535 aa13.14□□□□□ -0.31
VRK3-224ENST00000601849 GNPATO15228 680 aa13.14□□□□□ -0.31
VRK3-224ENST00000601849 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
VRK3-224ENST00000601849 ASAP1Q9ULH1 1129 aa13.14□□□□□ -0.31
VRK3-224ENST00000601849 RTCBQ9Y3I0 505 aaKnown RBP13.14□□□□□ -0.31
VRK3-224ENST00000601849 PLEKHG2Q9H7P9 1386 aa13.13□□□□□ -0.31
VRK3-224ENST00000601849 EIF4G2P78344 907 aaKnown RBP eCLIP13.13□□□□□ -0.31
VRK3-224ENST00000601849 AMOTQ4VCS5 1084 aa13.13□□□□□ -0.31
VRK3-224ENST00000601849 NLGN1Q8N2Q7 840 aa13.13□□□□□ -0.31
VRK3-224ENST00000601849 PCGF6Q9BYE7 350 aa13.13□□□□□ -0.31
VRK3-224ENST00000601849 IGSF1Q8N6C5 1336 aa13.13□□□□□ -0.31
VRK3-224ENST00000601849 EIF4A2Q14240 407 aaKnown RBP13.12□□□□□ -0.31
VRK3-224ENST00000601849 LINC00116Q8NCU8 138 aa13.12□□□□□ -0.31
VRK3-224ENST00000601849 DCAF5Q96JK2 942 aa13.12□□□□□ -0.31
VRK3-224ENST00000601849 RBM42Q9BTD8 480 aaKnown RBP13.12□□□□□ -0.31
VRK3-224ENST00000601849 ATG3Q9NT62 314 aa13.12□□□□□ -0.31
VRK3-224ENST00000601849 C4BP0C0L5 1744 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms