RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 ANKRD26Q9UPS8 1709 aa35.86■■■■□ 3.33
PNKP-216ENST00000601816 ANO8Q9HCE9 1232 aaPredicted RBP35.84■■■■□ 3.33
PNKP-216ENST00000601816 TATP17735 454 aaPredicted RBP35.82■■■■□ 3.32
PNKP-216ENST00000601816 BTAF1O14981 1849 aa35.81■■■■□ 3.32
PNKP-216ENST00000601816 SHANK3Q9BYB0 1731 aa35.81■■■■□ 3.32
PNKP-216ENST00000601816 WASHC2AQ641Q2 1341 aa35.81■■■■□ 3.32
PNKP-216ENST00000601816 POLKQ9UBT6 870 aa35.8■■■■□ 3.32
PNKP-216ENST00000601816 NSD2O96028 1365 aa35.79■■■■□ 3.32
PNKP-216ENST00000601816 TNNT2P45379 298 aaPredicted RBP35.79■■■■□ 3.32
PNKP-216ENST00000601816 MAP2P11137 1827 aaKnown RBP35.78■■■■□ 3.32
PNKP-216ENST00000601816 KAT6BQ8WYB5 2073 aa35.77■■■■□ 3.32
PNKP-216ENST00000601816 SYTL4Q96C24 671 aaPredicted RBP35.75■■■■□ 3.31
PNKP-216ENST00000601816 STK32BQ9NY57 414 aa35.75■■■■□ 3.31
PNKP-216ENST00000601816 DOT1LQ8TEK3 1739 aa35.74■■■■□ 3.31
PNKP-216ENST00000601816 PRIM1P49642 420 aaKnown RBP35.74■■■■□ 3.31
PNKP-216ENST00000601816 KIF7Q2M1P5 1343 aa35.74■■■■□ 3.31
PNKP-216ENST00000601816 NCAPD2Q15021 1401 aa35.73■■■■□ 3.31
PNKP-216ENST00000601816 PCDH11XQ9BZA7 1347 aa35.72■■■■□ 3.31
PNKP-216ENST00000601816 PCDH11YQ9BZA8 1340 aa35.72■■■■□ 3.31
PNKP-216ENST00000601816 KNSTRNQ9Y448 316 aa35.71■■■■□ 3.31
PNKP-216ENST00000601816 SPON1Q9HCB6 807 aa35.7■■■■□ 3.31
PNKP-216ENST00000601816 SLC15A2Q16348 729 aa35.69■■■■□ 3.3
PNKP-216ENST00000601816 EYA1Q99502 592 aa35.68■■■■□ 3.3
PNKP-216ENST00000601816 MORC1Q86VD1 984 aa35.67■■■■□ 3.3
PNKP-216ENST00000601816 CASZ1Q86V15 1759 aa35.66■■■■□ 3.3
PNKP-216ENST00000601816 PAPPAQ13219 1627 aa35.65■■■■□ 3.3
PNKP-216ENST00000601816 EIF4A2Q14240 407 aaKnown RBP35.65■■■■□ 3.3
PNKP-216ENST00000601816 PKD1L3Q7Z443 1732 aa35.63■■■■□ 3.29
PNKP-216ENST00000601816 SLC27A3Q5K4L6 730 aa35.63■■■■□ 3.29
PNKP-216ENST00000601816 PDGFDQ9GZP0 370 aaPredicted RBP35.63■■■■□ 3.29
PNKP-216ENST00000601816 LRRC4BQ9NT99 713 aa35.63■■■■□ 3.29
PNKP-216ENST00000601816 CYP27B1O15528 508 aa35.61■■■■□ 3.29
PNKP-216ENST00000601816 SPG7Q9UQ90 795 aa35.6■■■■□ 3.29
PNKP-216ENST00000601816 PPP1R1BQ9UD71 204 aaPredicted RBP35.58■■■■□ 3.29
PNKP-216ENST00000601816 ZBTB7AO95365 584 aa35.57■■■■□ 3.28
PNKP-216ENST00000601816 AMER1Q5JTC6 1135 aaPredicted RBP35.57■■■■□ 3.28
PNKP-216ENST00000601816 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.56■■■■□ 3.28
PNKP-216ENST00000601816 ZNF827Q17R98 1081 aa35.55■■■■□ 3.28
PNKP-216ENST00000601816 IGSF1Q8N6C5 1336 aa35.55■■■■□ 3.28
PNKP-216ENST00000601816 LY75O60449 1722 aa35.54■■■■□ 3.28
PNKP-216ENST00000601816 KCNQ4P56696 695 aa35.51■■■■□ 3.28
PNKP-216ENST00000601816 AKT1S1Q96B36 256 aa35.51■■■■□ 3.28
PNKP-216ENST00000601816 CCNL1Q9UK58 526 aaPredicted RBP35.51■■■■□ 3.28
PNKP-216ENST00000601816 TOGARAM1Q9Y4F4 1720 aa35.5■■■■□ 3.27
PNKP-216ENST00000601816 NKX1-1Q15270 411 aaPredicted RBP35.5■■■■□ 3.27
PNKP-216ENST00000601816 MPRIPQ6WCQ1 1025 aa35.5■■■■□ 3.27
PNKP-216ENST00000601816 PLEKHG2Q9H7P9 1386 aa35.5■■■■□ 3.27
PNKP-216ENST00000601816 ATF5Q9Y2D1 282 aaPredicted RBP35.49■■■■□ 3.27
PNKP-216ENST00000601816 MTFR1LQ9H019 292 aa35.48■■■■□ 3.27
PNKP-216ENST00000601816 PER1O15534 1290 aaPredicted RBP35.47■■■■□ 3.27
PNKP-216ENST00000601816 IFNL2Q8IZJ0 200 aa35.46■■■■□ 3.27
PNKP-216ENST00000601816 PHKG2P15735 406 aa35.45■■■■□ 3.27
PNKP-216ENST00000601816 PALLDQ8WX93 1383 aa35.44■■■■□ 3.26
PNKP-216ENST00000601816 PTGER2P43116 358 aa35.44■■■■□ 3.26
PNKP-216ENST00000601816 ITGB4P16144 1822 aa35.43■■■■□ 3.26
PNKP-216ENST00000601816 TFCP2L1Q9NZI6 479 aa35.43■■■■□ 3.26
PNKP-216ENST00000601816 CC2D1BQ5T0F9 858 aaKnown RBP35.42■■■■□ 3.26
PNKP-216ENST00000601816 QSER1Q2KHR3 1735 aa35.41■■■■□ 3.26
PNKP-216ENST00000601816 SMARCC1Q92922 1105 aaPredicted RBP35.41■■■■□ 3.26
PNKP-216ENST00000601816 PIGBQ92521 554 aa35.4■■■■□ 3.26
PNKP-216ENST00000601816 PNPLA7Q6ZV29 1317 aa35.39■■■■□ 3.26
PNKP-216ENST00000601816 PLEKHO1Q53GL0 409 aaPredicted RBP35.39■■■■□ 3.26
PNKP-216ENST00000601816 IL13P35225 146 aa35.38■■■■□ 3.25
PNKP-216ENST00000601816 MTHFSP49914 203 aa35.38■■■■□ 3.25
PNKP-216ENST00000601816 AEBP1Q8IUX7 1158 aa35.38■■■■□ 3.25
PNKP-216ENST00000601816 TMOD3Q9NYL9 352 aa35.38■■■■□ 3.25
PNKP-216ENST00000601816 HMGB2P26583 209 aaKnown RBP35.36■■■■□ 3.25
PNKP-216ENST00000601816 NPC1L1Q9UHC9 1359 aa35.36■■■■□ 3.25
PNKP-216ENST00000601816 TUBGCP6Q96RT7 1819 aa35.35■■■■□ 3.25
PNKP-216ENST00000601816 AMOTQ4VCS5 1084 aa35.35■■■■□ 3.25
PNKP-216ENST00000601816 SULT6B1Q6IMI4 303 aa35.35■■■■□ 3.25
PNKP-216ENST00000601816 SLC16A10Q8TF71 515 aa35.35■■■■□ 3.25
PNKP-216ENST00000601816 SGIP1Q9BQI5 828 aa35.35■■■■□ 3.25
PNKP-216ENST00000601816 C5P01031 1676 aa35.33■■■■□ 3.25
PNKP-216ENST00000601816 HSP90AB1P08238 724 aaKnown RBP35.33■■■■□ 3.25
PNKP-216ENST00000601816 ZNF530Q6P9A1 599 aaPredicted RBP35.33■■■■□ 3.25
PNKP-216ENST00000601816 KDRP35968 1356 aa35.32■■■■□ 3.24
PNKP-216ENST00000601816 CNGB1Q14028 1251 aaPredicted RBP35.3■■■■□ 3.24
PNKP-216ENST00000601816 DCAF5Q96JK2 942 aa35.29■■■■□ 3.24
PNKP-216ENST00000601816 ARXQ96QS3 562 aa35.28■■■■□ 3.24
PNKP-216ENST00000601816 ASAP1Q9ULH1 1129 aa35.27■■■■□ 3.24
PNKP-216ENST00000601816 TAF1LQ8IZX4 1826 aa35.27■■■■□ 3.24
PNKP-216ENST00000601816 LOC102724428A0A0B4J2F2 783 aa35.26■■■■□ 3.24
PNKP-216ENST00000601816 ERVV-2B6SEH9 535 aa35.26■■■■□ 3.24
PNKP-216ENST00000601816 SIK1P57059 783 aa35.26■■■■□ 3.24
PNKP-216ENST00000601816 C1orf141Q5JVX7 400 aa35.26■■■■□ 3.24
PNKP-216ENST00000601816 FHDC1Q9C0D6 1143 aaPredicted RBP35.26■■■■□ 3.24
PNKP-216ENST00000601816 DCAF8L1A6NGE4 600 aa35.25■■■■□ 3.23
PNKP-216ENST00000601816 MSH5O43196 834 aa35.25■■■■□ 3.23
PNKP-216ENST00000601816 DIAPH1O60610 1272 aaKnown RBP35.24■■■■□ 3.23
PNKP-216ENST00000601816 COL23A1Q86Y22 540 aaPredicted RBP35.24■■■■□ 3.23
PNKP-216ENST00000601816 KDM6AO15550 1401 aaPredicted RBP35.23■■■■□ 3.23
PNKP-216ENST00000601816 POLD1P28340 1107 aa35.23■■■■□ 3.23
PNKP-216ENST00000601816 ATG3Q9NT62 314 aa35.23■■■■□ 3.23
PNKP-216ENST00000601816 C4BP0C0L5 1744 aa35.23■■■■□ 3.23
PNKP-216ENST00000601816 AK7Q96M32 723 aa35.22■■■■□ 3.23
PNKP-216ENST00000601816 SYT17Q9BSW7 474 aa35.21■■■■□ 3.23
PNKP-216ENST00000601816 FLAD1Q8NFF5 587 aa35.2■■■■□ 3.23
PNKP-216ENST00000601816 COL24A1Q17RW2 1714 aa35.2■■■■□ 3.23
PNKP-216ENST00000601816 HMOX1P09601 288 aa35.19■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms