RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 RGPD2P0DJD1 1756 aa21.8■■□□□ 1.08
VRK3-221ENST00000600284 TATP17735 454 aaPredicted RBP21.8■■□□□ 1.08
VRK3-221ENST00000600284 WASHC2AQ641Q2 1341 aa21.79■■□□□ 1.08
VRK3-221ENST00000600284 USHBP1Q8N6Y0 703 aa21.78■■□□□ 1.08
VRK3-221ENST00000600284 BTAF1O14981 1849 aa21.78■■□□□ 1.08
VRK3-221ENST00000600284 PRIM1P49642 420 aaKnown RBP21.77■■□□□ 1.08
VRK3-221ENST00000600284 SLC27A3Q5K4L6 730 aa21.77■■□□□ 1.08
VRK3-221ENST00000600284 PANK3Q9H999 370 aa21.77■■□□□ 1.08
VRK3-221ENST00000600284 KAT6BQ8WYB5 2073 aa21.76■■□□□ 1.07
VRK3-221ENST00000600284 PPM1GO15355 546 aaPredicted RBP21.76■■□□□ 1.07
VRK3-221ENST00000600284 POLKQ9UBT6 870 aa21.76■■□□□ 1.07
VRK3-221ENST00000600284 SYTL4Q96C24 671 aaPredicted RBP21.75■■□□□ 1.07
VRK3-221ENST00000600284 PPP1R1BQ9UD71 204 aaPredicted RBP21.74■■□□□ 1.07
VRK3-221ENST00000600284 PCDH11XQ9BZA7 1347 aa21.74■■□□□ 1.07
VRK3-221ENST00000600284 PCDH11YQ9BZA8 1340 aa21.74■■□□□ 1.07
VRK3-221ENST00000600284 CASZ1Q86V15 1759 aa21.74■■□□□ 1.07
VRK3-221ENST00000600284 SHANK3Q9BYB0 1731 aa21.73■■□□□ 1.07
VRK3-221ENST00000600284 LRRC4BQ9NT99 713 aa21.73■■□□□ 1.07
VRK3-221ENST00000600284 NSD2O96028 1365 aa21.73■■□□□ 1.07
VRK3-221ENST00000600284 NCAPD2Q15021 1401 aa21.72■■□□□ 1.07
VRK3-221ENST00000600284 ANKRD26Q9UPS8 1709 aa21.72■■□□□ 1.07
VRK3-221ENST00000600284 PDGFDQ9GZP0 370 aaPredicted RBP21.72■■□□□ 1.07
VRK3-221ENST00000600284 MAP2P11137 1827 aaKnown RBP21.71■■□□□ 1.07
VRK3-221ENST00000600284 PAPPAQ13219 1627 aa21.7■■□□□ 1.06
VRK3-221ENST00000600284 EYA1Q99502 592 aa21.7■■□□□ 1.06
VRK3-221ENST00000600284 ZBTB7AO95365 584 aa21.69■■□□□ 1.06
VRK3-221ENST00000600284 AKT1S1Q96B36 256 aa21.69■■□□□ 1.06
VRK3-221ENST00000600284 MTFR1LQ9H019 292 aa21.69■■□□□ 1.06
VRK3-221ENST00000600284 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.69■■□□□ 1.06
VRK3-221ENST00000600284 CYP27B1O15528 508 aa21.68■■□□□ 1.06
VRK3-221ENST00000600284 HMGB2P26583 209 aaKnown RBP21.68■■□□□ 1.06
VRK3-221ENST00000600284 TNNT2P45379 298 aaPredicted RBP21.68■■□□□ 1.06
VRK3-221ENST00000600284 SPG7Q9UQ90 795 aa21.68■■□□□ 1.06
VRK3-221ENST00000600284 DOT1LQ8TEK3 1739 aa21.68■■□□□ 1.06
VRK3-221ENST00000600284 PTGER2P43116 358 aa21.67■■□□□ 1.06
VRK3-221ENST00000600284 ZNF827Q17R98 1081 aa21.67■■□□□ 1.06
VRK3-221ENST00000600284 KNSTRNQ9Y448 316 aa21.67■■□□□ 1.06
VRK3-221ENST00000600284 PLEKHG2Q9H7P9 1386 aa21.66■■□□□ 1.06
VRK3-221ENST00000600284 NKX1-1Q15270 411 aaPredicted RBP21.66■■□□□ 1.06
VRK3-221ENST00000600284 ATF5Q9Y2D1 282 aaPredicted RBP21.66■■□□□ 1.06
VRK3-221ENST00000600284 EIF4A2Q14240 407 aaKnown RBP21.65■■□□□ 1.06
VRK3-221ENST00000600284 MORC1Q86VD1 984 aa21.64■■□□□ 1.05
VRK3-221ENST00000600284 SLC16A10Q8TF71 515 aa21.64■■□□□ 1.05
VRK3-221ENST00000600284 CCNL1Q9UK58 526 aaPredicted RBP21.64■■□□□ 1.05
VRK3-221ENST00000600284 SGIP1Q9BQI5 828 aa21.63■■□□□ 1.05
VRK3-221ENST00000600284 LY75O60449 1722 aa21.63■■□□□ 1.05
VRK3-221ENST00000600284 PKD1L3Q7Z443 1732 aa21.63■■□□□ 1.05
VRK3-221ENST00000600284 KIF7Q2M1P5 1343 aa21.61■■□□□ 1.05
VRK3-221ENST00000600284 DCAF8L1A6NGE4 600 aa21.61■■□□□ 1.05
VRK3-221ENST00000600284 TFCP2L1Q9NZI6 479 aa21.61■■□□□ 1.05
VRK3-221ENST00000600284 IGSF1Q8N6C5 1336 aa21.6■■□□□ 1.05
VRK3-221ENST00000600284 KCNQ4P56696 695 aa21.6■■□□□ 1.05
VRK3-221ENST00000600284 MPRIPQ6WCQ1 1025 aa21.6■■□□□ 1.05
VRK3-221ENST00000600284 IFNL2Q8IZJ0 200 aa21.6■■□□□ 1.05
VRK3-221ENST00000600284 SMARCC1Q92922 1105 aaPredicted RBP21.6■■□□□ 1.05
VRK3-221ENST00000600284 PNPLA7Q6ZV29 1317 aa21.59■■□□□ 1.05
VRK3-221ENST00000600284 QSER1Q2KHR3 1735 aa21.58■■□□□ 1.05
VRK3-221ENST00000600284 AMER1Q5JTC6 1135 aaPredicted RBP21.58■■□□□ 1.05
VRK3-221ENST00000600284 PHKG2P15735 406 aa21.57■■□□□ 1.04
VRK3-221ENST00000600284 PALLDQ8WX93 1383 aa21.57■■□□□ 1.04
VRK3-221ENST00000600284 PIGBQ92521 554 aa21.56■■□□□ 1.04
VRK3-221ENST00000600284 ARXQ96QS3 562 aa21.56■■□□□ 1.04
VRK3-221ENST00000600284 SYT17Q9BSW7 474 aa21.55■■□□□ 1.04
VRK3-221ENST00000600284 PER1O15534 1290 aaPredicted RBP21.54■■□□□ 1.04
VRK3-221ENST00000600284 FHDC1Q9C0D6 1143 aaPredicted RBP21.54■■□□□ 1.04
VRK3-221ENST00000600284 AMOTQ4VCS5 1084 aa21.53■■□□□ 1.04
VRK3-221ENST00000600284 PLEKHO1Q53GL0 409 aaPredicted RBP21.53■■□□□ 1.04
VRK3-221ENST00000600284 TMOD3Q9NYL9 352 aa21.53■■□□□ 1.04
VRK3-221ENST00000600284 TOGARAM1Q9Y4F4 1720 aa21.52■■□□□ 1.04
VRK3-221ENST00000600284 MAP3K5Q99683 1374 aa21.52■■□□□ 1.04
VRK3-221ENST00000600284 HSP90AB1P08238 724 aaKnown RBP21.52■■□□□ 1.04
VRK3-221ENST00000600284 POLD1P28340 1107 aa21.52■■□□□ 1.04
VRK3-221ENST00000600284 FLAD1Q8NFF5 587 aa21.52■■□□□ 1.04
VRK3-221ENST00000600284 ITGB4P16144 1822 aa21.52■■□□□ 1.04
VRK3-221ENST00000600284 ERVV-2B6SEH9 535 aa21.5■■□□□ 1.03
VRK3-221ENST00000600284 IL13P35225 146 aa21.5■■□□□ 1.03
VRK3-221ENST00000600284 COL23A1Q86Y22 540 aaPredicted RBP21.5■■□□□ 1.03
VRK3-221ENST00000600284 DCAF5Q96JK2 942 aa21.5■■□□□ 1.03
VRK3-221ENST00000600284 LOC102724428A0A0B4J2F2 783 aa21.48■■□□□ 1.03
VRK3-221ENST00000600284 SIK1P57059 783 aa21.48■■□□□ 1.03
VRK3-221ENST00000600284 COL24A1Q17RW2 1714 aa21.48■■□□□ 1.03
VRK3-221ENST00000600284 TUBGCP6Q96RT7 1819 aa21.48■■□□□ 1.03
VRK3-221ENST00000600284 C5P01031 1676 aa21.47■■□□□ 1.03
VRK3-221ENST00000600284 MSH5O43196 834 aa21.47■■□□□ 1.03
VRK3-221ENST00000600284 KDRP35968 1356 aa21.47■■□□□ 1.03
VRK3-221ENST00000600284 NPC1L1Q9UHC9 1359 aa21.47■■□□□ 1.03
VRK3-221ENST00000600284 MTHFSP49914 203 aa21.46■■□□□ 1.03
VRK3-221ENST00000600284 SULT6B1Q6IMI4 303 aa21.46■■□□□ 1.03
VRK3-221ENST00000600284 ZNF530Q6P9A1 599 aaPredicted RBP21.46■■□□□ 1.03
VRK3-221ENST00000600284 ASAP1Q9ULH1 1129 aa21.46■■□□□ 1.03
VRK3-221ENST00000600284 YY1P25490 414 aa21.45■■□□□ 1.02
VRK3-221ENST00000600284 AEBP1Q8IUX7 1158 aa21.45■■□□□ 1.02
VRK3-221ENST00000600284 AK7Q96M32 723 aa21.45■■□□□ 1.02
VRK3-221ENST00000600284 ATG3Q9NT62 314 aa21.45■■□□□ 1.02
VRK3-221ENST00000600284 TAF1LQ8IZX4 1826 aa21.45■■□□□ 1.02
VRK3-221ENST00000600284 C1orf141Q5JVX7 400 aa21.44■■□□□ 1.02
VRK3-221ENST00000600284 CC2D1BQ5T0F9 858 aaKnown RBP21.43■■□□□ 1.02
VRK3-221ENST00000600284 C4BP0C0L5 1744 aa21.42■■□□□ 1.02
VRK3-221ENST00000600284 ATP6V1AP38606 617 aa21.42■■□□□ 1.02
VRK3-221ENST00000600284 SSFA2P28290 1259 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 153.2 ms