RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	AEBP1	Q8IUX7	1158 aa		29.37	■■■□□ 2.29
LTBP4-227	ENST00000600026	MRS2	Q9HD23	443 aa		29.37	■■■□□ 2.29
LTBP4-227	ENST00000600026	U2SURP	O15042	1029 aa	Known RBP	29.36	■■■□□ 2.29
LTBP4-227	ENST00000600026	TAT	P17735	454 aa	Predicted RBP	29.36	■■■□□ 2.29
LTBP4-227	ENST00000600026	SULT6B1	Q6IMI4	303 aa		29.35	■■■□□ 2.29
LTBP4-227	ENST00000600026	KRT27	Q7Z3Y8	459 aa		29.35	■■■□□ 2.29
LTBP4-227	ENST00000600026	NUDC	Q9Y266	331 aa		29.34	■■■□□ 2.29
LTBP4-227	ENST00000600026	EXOC5	O00471	708 aa		29.32	■■■□□ 2.28
LTBP4-227	ENST00000600026	HMOX1	P09601	288 aa		29.32	■■■□□ 2.28
LTBP4-227	ENST00000600026	PDE3B	Q13370	1112 aa		29.31	■■■□□ 2.28
LTBP4-227	ENST00000600026	CCDC184	Q52MB2	194 aa		29.31	■■■□□ 2.28
LTBP4-227	ENST00000600026	PLEKHG2	Q9H7P9	1386 aa		29.29	■■■□□ 2.28
LTBP4-227	ENST00000600026	U2AF1L5	P0DN76	240 aa	Predicted RBP	29.27	■■■□□ 2.28
LTBP4-227	ENST00000600026	U2AF1	Q01081	240 aa	Known RBP eCLIP	29.27	■■■□□ 2.28
LTBP4-227	ENST00000600026	ZCRB1	Q8TBF4	217 aa	Known RBP	29.27	■■■□□ 2.28
LTBP4-227	ENST00000600026	FAM182B	Q5T319	152 aa		29.26	■■■□□ 2.27
LTBP4-227	ENST00000600026	MARCH10	Q8NA82	808 aa	Predicted RBP	29.26	■■■□□ 2.27
LTBP4-227	ENST00000600026	SBF2	Q86WG5	1849 aa		29.24	■■■□□ 2.27
LTBP4-227	ENST00000600026	RSPH6A	Q9H0K4	717 aa		29.23	■■■□□ 2.27
LTBP4-227	ENST00000600026	PCDH11X	Q9BZA7	1347 aa		29.22	■■■□□ 2.27
LTBP4-227	ENST00000600026	PCDH11Y	Q9BZA8	1340 aa		29.22	■■■□□ 2.27
LTBP4-227	ENST00000600026	WDR43	Q15061	677 aa	Known RBP eCLIP	29.22	■■■□□ 2.27
LTBP4-227	ENST00000600026	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	29.22	■■■□□ 2.27
LTBP4-227	ENST00000600026	SPG7	Q9UQ90	795 aa		29.22	■■■□□ 2.27
LTBP4-227	ENST00000600026	DOT1L	Q8TEK3	1739 aa		29.21	■■■□□ 2.27
LTBP4-227	ENST00000600026	DDX54	Q8TDD1	881 aa	Known RBP	29.21	■■■□□ 2.27
LTBP4-227	ENST00000600026	PLEKHO1	Q53GL0	409 aa	Predicted RBP	29.2	■■■□□ 2.26
LTBP4-227	ENST00000600026	PRKAR2B	P31323	418 aa		29.19	■■■□□ 2.26
LTBP4-227	ENST00000600026	PNISR	Q8TF01	805 aa	Known RBP	29.19	■■■□□ 2.26
LTBP4-227	ENST00000600026	BCL9	O00512	1426 aa		29.18	■■■□□ 2.26
LTBP4-227	ENST00000600026	TOGARAM1	Q9Y4F4	1720 aa		29.17	■■■□□ 2.26
LTBP4-227	ENST00000600026	CYP27B1	O15528	508 aa		29.17	■■■□□ 2.26
LTBP4-227	ENST00000600026	FCHSD2	O94868	740 aa		29.17	■■■□□ 2.26
LTBP4-227	ENST00000600026	AMOT	Q4VCS5	1084 aa		29.17	■■■□□ 2.26
LTBP4-227	ENST00000600026	FAM196A	Q6ZSG2	479 aa		29.17	■■■□□ 2.26
LTBP4-227	ENST00000600026	NHS	Q6T4R5	1651 aa		29.16	■■■□□ 2.26
LTBP4-227	ENST00000600026	VIRMA	Q69YN4	1812 aa	Known RBP	29.16	■■■□□ 2.26
LTBP4-227	ENST00000600026	TNS1	Q9HBL0	1735 aa	Known RBP	29.16	■■■□□ 2.26
LTBP4-227	ENST00000600026	FAM9B	Q8IZU0	186 aa		29.15	■■■□□ 2.26
LTBP4-227	ENST00000600026	ZNF530	Q6P9A1	599 aa	Predicted RBP	29.14	■■■□□ 2.26
LTBP4-227	ENST00000600026	PHKG2	P15735	406 aa		29.13	■■■□□ 2.25
LTBP4-227	ENST00000600026	MTHFSD	Q2M296	383 aa	Known RBP	29.12	■■■□□ 2.25
LTBP4-227	ENST00000600026	IFNL2	Q8IZJ0	200 aa		29.12	■■■□□ 2.25
LTBP4-227	ENST00000600026	EP400	Q96L91	3159 aa		29.11	■■■□□ 2.25
LTBP4-227	ENST00000600026	PHACTR3	Q96KR7	559 aa		29.11	■■■□□ 2.25
LTBP4-227	ENST00000600026	KAT6B	Q8WYB5	2073 aa		29.11	■■■□□ 2.25
LTBP4-227	ENST00000600026	PLEKHF1	Q96S99	279 aa		29.1	■■■□□ 2.25
LTBP4-227	ENST00000600026	ADAMTS8	Q9UP79	889 aa		29.1	■■■□□ 2.25
LTBP4-227	ENST00000600026	SCN11A	Q9UI33	1791 aa		29.1	■■■□□ 2.25
LTBP4-227	ENST00000600026	ITGB4	P16144	1822 aa		29.1	■■■□□ 2.25
LTBP4-227	ENST00000600026	DLG5	Q8TDM6	1919 aa		29.1	■■■□□ 2.25
LTBP4-227	ENST00000600026	NKX1-1	Q15270	411 aa	Predicted RBP	29.08	■■■□□ 2.25
LTBP4-227	ENST00000600026	C1orf141	Q5JVX7	400 aa		29.08	■■■□□ 2.25
LTBP4-227	ENST00000600026	GAS2L2	Q8NHY3	880 aa		29.08	■■■□□ 2.25
LTBP4-227	ENST00000600026	PNN	Q9H307	717 aa	Known RBP	29.08	■■■□□ 2.25
LTBP4-227	ENST00000600026	ACSBG1	Q96GR2	724 aa		29.07	■■■□□ 2.24
LTBP4-227	ENST00000600026	ADAMTS7	Q9UKP4	1686 aa		29.07	■■■□□ 2.24
LTBP4-227	ENST00000600026	BTAF1	O14981	1849 aa		29.06	■■■□□ 2.24
LTBP4-227	ENST00000600026	KDM6A	O15550	1401 aa	Predicted RBP	29.06	■■■□□ 2.24
LTBP4-227	ENST00000600026	AKAP4	Q5JQC9	854 aa		29.06	■■■□□ 2.24
LTBP4-227	ENST00000600026	MAPK8IP3	Q9UPT6	1336 aa		29.05	■■■□□ 2.24
LTBP4-227	ENST00000600026	TRIM37	O94972	964 aa		29.05	■■■□□ 2.24
LTBP4-227	ENST00000600026	NEFM	P07197	916 aa		29.05	■■■□□ 2.24
LTBP4-227	ENST00000600026	HSP90AB1	P08238	724 aa	Known RBP	29.04	■■■□□ 2.24
LTBP4-227	ENST00000600026	CCDC146	Q8IYE0	955 aa		29.04	■■■□□ 2.24
LTBP4-227	ENST00000600026	MAP3K5	Q99683	1374 aa		29.02	■■■□□ 2.24
LTBP4-227	ENST00000600026	KCNQ2	O43526	872 aa		29.01	■■■□□ 2.23
LTBP4-227	ENST00000600026	PTF1A	Q7RTS3	328 aa		29.01	■■■□□ 2.23
LTBP4-227	ENST00000600026	MPRIP	Q6WCQ1	1025 aa		29	■■■□□ 2.23
LTBP4-227	ENST00000600026	RUNDC1	Q96C34	613 aa		29	■■■□□ 2.23
LTBP4-227	ENST00000600026	DCAF5	Q96JK2	942 aa		29	■■■□□ 2.23
LTBP4-227	ENST00000600026	BCL11B	Q9C0K0	894 aa	Predicted RBP	28.99	■■■□□ 2.23
LTBP4-227	ENST00000600026	PRIM1	P49642	420 aa	Known RBP	28.98	■■■□□ 2.23
LTBP4-227	ENST00000600026	SYTL4	Q96C24	671 aa	Predicted RBP	28.98	■■■□□ 2.23
LTBP4-227	ENST00000600026	GNAT3	A8MTJ3	354 aa		28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	NFE2L2	Q16236	605 aa		28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	CCDC125	Q86Z20	511 aa		28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	RGPD3	A6NKT7	1758 aa	Predicted RBP	28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	RGPD4	Q7Z3J3	1758 aa		28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	MRC1	P22897	1456 aa		28.97	■■■□□ 2.23
LTBP4-227	ENST00000600026	SF3B2	Q13435	895 aa	Known RBP	28.96	■■■□□ 2.23
LTBP4-227	ENST00000600026	SIPA1L3	O60292	1781 aa	Predicted RBP	28.95	■■■□□ 2.22
LTBP4-227	ENST00000600026	RNMT	O43148	476 aa	Known RBP	28.94	■■■□□ 2.22
LTBP4-227	ENST00000600026	DEFB132	Q7Z7B7	95 aa		28.94	■■■□□ 2.22
LTBP4-227	ENST00000600026	LGR6	Q9HBX8	967 aa		28.94	■■■□□ 2.22
LTBP4-227	ENST00000600026	ERVV-2	B6SEH9	535 aa		28.93	■■■□□ 2.22
LTBP4-227	ENST00000600026	APBA3	O96018	575 aa		28.92	■■■□□ 2.22
LTBP4-227	ENST00000600026	TMPO	P42166	694 aa	Known RBP	28.92	■■■□□ 2.22
LTBP4-227	ENST00000600026	TMOD3	Q9NYL9	352 aa		28.91	■■■□□ 2.22
LTBP4-227	ENST00000600026	IL17RE	Q8NFR9	667 aa		28.9	■■■□□ 2.22
LTBP4-227	ENST00000600026	RRP7A	Q9Y3A4	280 aa	Known RBP	28.9	■■■□□ 2.22
LTBP4-227	ENST00000600026	CEMIP	Q8WUJ3	1361 aa		28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	LY75	O60449	1722 aa		28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	BAG6	P46379	1132 aa		28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	PIGB	Q92521	554 aa		28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	RTF1	Q92541	710 aa	Known RBP	28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	PAPPA	Q13219	1627 aa		28.89	■■■□□ 2.22
LTBP4-227	ENST00000600026	RREB1	Q92766	1687 aa		28.89	■■■□□ 2.21
LTBP4-227	ENST00000600026	HTATSF1	O43719	755 aa	Known RBP	28.88	■■■□□ 2.21
LTBP4-227	ENST00000600026	RIPK4	P57078	832 aa		28.88	■■■□□ 2.21

Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms