RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 NBPF4Q96M43 638 aa25.98■■□□□ 1.75
PNKP-213ENST00000599543 CARD14Q9BXL6 1004 aa25.98■■□□□ 1.75
PNKP-213ENST00000599543 INSRP06213 1382 aa25.97■■□□□ 1.75
PNKP-213ENST00000599543 SYTL4Q96C24 671 aaPredicted RBP25.97■■□□□ 1.75
PNKP-213ENST00000599543 USHBP1Q8N6Y0 703 aa25.96■■□□□ 1.75
PNKP-213ENST00000599543 CGNL1Q0VF96 1302 aa25.95■■□□□ 1.75
PNKP-213ENST00000599543 HSP90AB2PQ58FF8 381 aa25.95■■□□□ 1.74
PNKP-213ENST00000599543 RAPGEF4Q8WZA2 1011 aa25.95■■□□□ 1.74
PNKP-213ENST00000599543 ANKRD26Q9UPS8 1709 aa25.94■■□□□ 1.74
PNKP-213ENST00000599543 MAP2P11137 1827 aaKnown RBP25.93■■□□□ 1.74
PNKP-213ENST00000599543 PRIM1P49642 420 aaKnown RBP25.92■■□□□ 1.74
PNKP-213ENST00000599543 POLR3GLQ9BT43 218 aa25.92■■□□□ 1.74
PNKP-213ENST00000599543 LY75O60449 1722 aa25.91■■□□□ 1.74
PNKP-213ENST00000599543 TATP17735 454 aaPredicted RBP25.91■■□□□ 1.74
PNKP-213ENST00000599543 SLC27A3Q5K4L6 730 aa25.91■■□□□ 1.74
PNKP-213ENST00000599543 ATF5Q9Y2D1 282 aaPredicted RBP25.91■■□□□ 1.74
PNKP-213ENST00000599543 MTFR1LQ9H019 292 aa25.9■■□□□ 1.74
PNKP-213ENST00000599543 LRRC4BQ9NT99 713 aa25.9■■□□□ 1.74
PNKP-213ENST00000599543 EMILIN1Q9Y6C2 1016 aa25.9■■□□□ 1.74
PNKP-213ENST00000599543 QSER1Q2KHR3 1735 aa25.9■■□□□ 1.74
PNKP-213ENST00000599543 DCAF8L1A6NGE4 600 aa25.89■■□□□ 1.74
PNKP-213ENST00000599543 PTGER2P43116 358 aa25.89■■□□□ 1.74
PNKP-213ENST00000599543 NSD2O96028 1365 aa25.88■■□□□ 1.73
PNKP-213ENST00000599543 PPM1GO15355 546 aaPredicted RBP25.88■■□□□ 1.73
PNKP-213ENST00000599543 EIF4G2P78344 907 aaKnown RBP eCLIP25.88■■□□□ 1.73
PNKP-213ENST00000599543 ZNF827Q17R98 1081 aa25.88■■□□□ 1.73
PNKP-213ENST00000599543 PCDH11XQ9BZA7 1347 aa25.88■■□□□ 1.73
PNKP-213ENST00000599543 PCDH11YQ9BZA8 1340 aa25.88■■□□□ 1.73
PNKP-213ENST00000599543 UTRNP46939 3433 aa25.86■■□□□ 1.73
PNKP-213ENST00000599543 TUBGCP6Q96RT7 1819 aa25.86■■□□□ 1.73
PNKP-213ENST00000599543 PKD1L3Q7Z443 1732 aa25.85■■□□□ 1.73
PNKP-213ENST00000599543 HSPA5P11021 654 aaKnown RBP25.83■■□□□ 1.73
PNKP-213ENST00000599543 AKT1S1Q96B36 256 aa25.83■■□□□ 1.73
PNKP-213ENST00000599543 KCNQ4P56696 695 aa25.81■■□□□ 1.72
PNKP-213ENST00000599543 WASHC2AQ641Q2 1341 aa25.81■■□□□ 1.72
PNKP-213ENST00000599543 NCAPD2Q15021 1401 aa25.8■■□□□ 1.72
PNKP-213ENST00000599543 ITGB4P16144 1822 aa25.8■■□□□ 1.72
PNKP-213ENST00000599543 SGIP1Q9BQI5 828 aa25.8■■□□□ 1.72
PNKP-213ENST00000599543 TFCP2L1Q9NZI6 479 aa25.8■■□□□ 1.72
PNKP-213ENST00000599543 CCNL1Q9UK58 526 aaPredicted RBP25.8■■□□□ 1.72
PNKP-213ENST00000599543 TOGARAM1Q9Y4F4 1720 aa25.8■■□□□ 1.72
PNKP-213ENST00000599543 C5P01031 1676 aa25.78■■□□□ 1.72
PNKP-213ENST00000599543 FHDC1Q9C0D6 1143 aaPredicted RBP25.78■■□□□ 1.72
PNKP-213ENST00000599543 TNNT2P45379 298 aaPredicted RBP25.77■■□□□ 1.72
PNKP-213ENST00000599543 POLKQ9UBT6 870 aa25.77■■□□□ 1.72
PNKP-213ENST00000599543 PNPLA7Q6ZV29 1317 aa25.77■■□□□ 1.72
PNKP-213ENST00000599543 CYP27B1O15528 508 aa25.76■■□□□ 1.71
PNKP-213ENST00000599543 YY1P25490 414 aa25.76■■□□□ 1.71
PNKP-213ENST00000599543 ARXQ96QS3 562 aa25.76■■□□□ 1.71
PNKP-213ENST00000599543 SYT17Q9BSW7 474 aa25.76■■□□□ 1.71
PNKP-213ENST00000599543 SLC16A10Q8TF71 515 aa25.75■■□□□ 1.71
PNKP-213ENST00000599543 TAF1LQ8IZX4 1826 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 COL24A1Q17RW2 1714 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 MPRIPQ6WCQ1 1025 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 EYA1Q99502 592 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 PANK3Q9H999 370 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 SPG7Q9UQ90 795 aa25.74■■□□□ 1.71
PNKP-213ENST00000599543 PALLDQ8WX93 1383 aa25.72■■□□□ 1.71
PNKP-213ENST00000599543 POLD1P28340 1107 aa25.71■■□□□ 1.71
PNKP-213ENST00000599543 MAP3K5Q99683 1374 aa25.69■■□□□ 1.7
PNKP-213ENST00000599543 GOLGB1Q14789 3259 aaKnown RBP25.69■■□□□ 1.7
PNKP-213ENST00000599543 HMGB2P26583 209 aaKnown RBP25.69■■□□□ 1.7
PNKP-213ENST00000599543 EIF4A2Q14240 407 aaKnown RBP25.69■■□□□ 1.7
PNKP-213ENST00000599543 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.68■■□□□ 1.7
PNKP-213ENST00000599543 MSH5O43196 834 aa25.67■■□□□ 1.7
PNKP-213ENST00000599543 NKX1-1Q15270 411 aaPredicted RBP25.67■■□□□ 1.7
PNKP-213ENST00000599543 SMARCC1Q92922 1105 aaPredicted RBP25.67■■□□□ 1.7
PNKP-213ENST00000599543 C4BP0C0L5 1744 aa25.66■■□□□ 1.7
PNKP-213ENST00000599543 KLHL34Q8N239 644 aa25.65■■□□□ 1.7
PNKP-213ENST00000599543 PLEKHG2Q9H7P9 1386 aa25.65■■□□□ 1.7
PNKP-213ENST00000599543 CHD4Q14839 1912 aa25.65■■□□□ 1.7
PNKP-213ENST00000599543 MORC1Q86VD1 984 aa25.64■■□□□ 1.7
PNKP-213ENST00000599543 PIGBQ92521 554 aa25.64■■□□□ 1.7
PNKP-213ENST00000599543 IGSF1Q8N6C5 1336 aa25.63■■□□□ 1.69
PNKP-213ENST00000599543 COL23A1Q86Y22 540 aaPredicted RBP25.63■■□□□ 1.69
PNKP-213ENST00000599543 IFNL2Q8IZJ0 200 aa25.63■■□□□ 1.69
PNKP-213ENST00000599543 KNSTRNQ9Y448 316 aa25.63■■□□□ 1.69
PNKP-213ENST00000599543 PHKG2P15735 406 aa25.62■■□□□ 1.69
PNKP-213ENST00000599543 TMOD3Q9NYL9 352 aa25.62■■□□□ 1.69
PNKP-213ENST00000599543 UBR3Q6ZT12 1888 aa25.6■■□□□ 1.69
PNKP-213ENST00000599543 FLAD1Q8NFF5 587 aa25.59■■□□□ 1.69
PNKP-213ENST00000599543 AK7Q96M32 723 aa25.59■■□□□ 1.69
PNKP-213ENST00000599543 LOC102724428A0A0B4J2F2 783 aa25.56■■□□□ 1.68
PNKP-213ENST00000599543 SIK1P57059 783 aa25.56■■□□□ 1.68
PNKP-213ENST00000599543 MSL1Q68DK7 614 aa25.56■■□□□ 1.68
PNKP-213ENST00000599543 KIF7Q2M1P5 1343 aa25.56■■□□□ 1.68
PNKP-213ENST00000599543 GPR162Q16538 588 aa25.55■■□□□ 1.68
PNKP-213ENST00000599543 PLEKHO1Q53GL0 409 aaPredicted RBP25.54■■□□□ 1.68
PNKP-213ENST00000599543 ASAP1Q9ULH1 1129 aa25.54■■□□□ 1.68
PNKP-213ENST00000599543 HSP90AB1P08238 724 aaKnown RBP25.53■■□□□ 1.68
PNKP-213ENST00000599543 PHF14O94880 888 aa25.52■■□□□ 1.68
PNKP-213ENST00000599543 DCAF5Q96JK2 942 aa25.52■■□□□ 1.68
PNKP-213ENST00000599543 AMOTQ4VCS5 1084 aa25.51■■□□□ 1.67
PNKP-213ENST00000599543 AMER1Q5JTC6 1135 aaPredicted RBP25.51■■□□□ 1.67
PNKP-213ENST00000599543 ZNF530Q6P9A1 599 aaPredicted RBP25.51■■□□□ 1.67
PNKP-213ENST00000599543 PELP1Q8IZL8 1130 aaKnown RBP25.51■■□□□ 1.67
PNKP-213ENST00000599543 NLGN2Q8NFZ4 835 aa25.51■■□□□ 1.67
PNKP-213ENST00000599543 ERVV-2B6SEH9 535 aa25.5■■□□□ 1.67
PNKP-213ENST00000599543 ATP6V1AP38606 617 aa25.5■■□□□ 1.67
PNKP-213ENST00000599543 AEBP1Q8IUX7 1158 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms