RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CARD10Q9BWT7 1032 aa24.61■■□□□ 1.53
LIG1-216ENST00000598938 MTHFSP49914 203 aa24.6■■□□□ 1.53
LIG1-216ENST00000598938 DDB1Q16531 1140 aa24.6■■□□□ 1.53
LIG1-216ENST00000598938 CDCA7Q9BWT1 371 aaPredicted RBP24.59■■□□□ 1.53
LIG1-216ENST00000598938 PPP2R1AP30153 589 aa24.58■■□□□ 1.53
LIG1-216ENST00000598938 BCL11BQ9C0K0 894 aaPredicted RBP24.58■■□□□ 1.53
LIG1-216ENST00000598938 NLRP2Q9NX02 1062 aa24.58■■□□□ 1.53
LIG1-216ENST00000598938 RALBP1Q15311 655 aa24.57■■□□□ 1.52
LIG1-216ENST00000598938 EIF4A2Q14240 407 aaKnown RBP24.56■■□□□ 1.52
LIG1-216ENST00000598938 RGPD2P0DJD1 1756 aa24.55■■□□□ 1.52
LIG1-216ENST00000598938 COL3A1P02461 1466 aaPredicted RBP24.54■■□□□ 1.52
LIG1-216ENST00000598938 NBPF6Q5VWK0 638 aa24.54■■□□□ 1.52
LIG1-216ENST00000598938 NBPF4Q96M43 638 aa24.54■■□□□ 1.52
LIG1-216ENST00000598938 ANO8Q9HCE9 1232 aaPredicted RBP24.53■■□□□ 1.52
LIG1-216ENST00000598938 NCAPD2Q15021 1401 aa24.52■■□□□ 1.52
LIG1-216ENST00000598938 PRKRIP1Q9H875 184 aaPredicted RBP24.52■■□□□ 1.52
LIG1-216ENST00000598938 IL13P35225 146 aa24.5■■□□□ 1.51
LIG1-216ENST00000598938 EYA1Q99502 592 aa24.5■■□□□ 1.51
LIG1-216ENST00000598938 NHSQ6T4R5 1651 aa24.48■■□□□ 1.51
LIG1-216ENST00000598938 USHBP1Q8N6Y0 703 aa24.48■■□□□ 1.51
LIG1-216ENST00000598938 MARCH10Q8NA82 808 aaPredicted RBP24.48■■□□□ 1.51
LIG1-216ENST00000598938 MYBBP1AQ9BQG0 1328 aaKnown RBP24.48■■□□□ 1.51
LIG1-216ENST00000598938 IGSF1Q8N6C5 1336 aa24.47■■□□□ 1.51
LIG1-216ENST00000598938 CFAP53Q96M91 514 aa24.47■■□□□ 1.51
LIG1-216ENST00000598938 DIAPH1O60610 1272 aaKnown RBP24.46■■□□□ 1.51
LIG1-216ENST00000598938 IL2RBP14784 551 aa24.46■■□□□ 1.51
LIG1-216ENST00000598938 PROM2Q8N271 834 aa24.46■■□□□ 1.51
LIG1-216ENST00000598938 TNS2Q63HR2 1409 aa24.45■■□□□ 1.51
LIG1-216ENST00000598938 CHD4Q14839 1912 aa24.44■■□□□ 1.5
LIG1-216ENST00000598938 MEGF6O75095 1541 aa24.44■■□□□ 1.5
LIG1-216ENST00000598938 PTGER2P43116 358 aa24.43■■□□□ 1.5
LIG1-216ENST00000598938 TXNRD1Q16881 649 aa24.43■■□□□ 1.5
LIG1-216ENST00000598938 PTF1AQ7RTS3 328 aa24.43■■□□□ 1.5
LIG1-216ENST00000598938 STK32BQ9NY57 414 aa24.43■■□□□ 1.5
LIG1-216ENST00000598938 EXOC5O00471 708 aa24.41■■□□□ 1.5
LIG1-216ENST00000598938 SLC15A2Q16348 729 aa24.41■■□□□ 1.5
LIG1-216ENST00000598938 PAPPAQ13219 1627 aa24.4■■□□□ 1.5
LIG1-216ENST00000598938 ANP32CO43423 234 aa24.4■■□□□ 1.5
LIG1-216ENST00000598938 ZBTB7AO95365 584 aa24.4■■□□□ 1.5
LIG1-216ENST00000598938 RAPGEF4Q8WZA2 1011 aa24.4■■□□□ 1.5
LIG1-216ENST00000598938 PDGFDQ9GZP0 370 aaPredicted RBP24.4■■□□□ 1.5
LIG1-216ENST00000598938 KDRP35968 1356 aa24.4■■□□□ 1.5
LIG1-216ENST00000598938 TATP17735 454 aaPredicted RBP24.38■■□□□ 1.49
LIG1-216ENST00000598938 MTFR1LQ9H019 292 aa24.38■■□□□ 1.49
LIG1-216ENST00000598938 PLEKHG2Q9H7P9 1386 aa24.38■■□□□ 1.49
LIG1-216ENST00000598938 AEBP1Q8IUX7 1158 aa24.37■■□□□ 1.49
LIG1-216ENST00000598938 SULT6B1Q6IMI4 303 aa24.36■■□□□ 1.49
LIG1-216ENST00000598938 MAP3K5Q99683 1374 aa24.35■■□□□ 1.49
LIG1-216ENST00000598938 NUDCQ9Y266 331 aa24.35■■□□□ 1.49
LIG1-216ENST00000598938 BTAF1O14981 1849 aa24.35■■□□□ 1.49
LIG1-216ENST00000598938 PKD1L3Q7Z443 1732 aa24.35■■□□□ 1.49
LIG1-216ENST00000598938 U2SURPO15042 1029 aaKnown RBP24.34■■□□□ 1.49
LIG1-216ENST00000598938 SGIP1Q9BQI5 828 aa24.34■■□□□ 1.49
LIG1-216ENST00000598938 SYT17Q9BSW7 474 aa24.34■■□□□ 1.49
LIG1-216ENST00000598938 ATF5Q9Y2D1 282 aaPredicted RBP24.34■■□□□ 1.49
LIG1-216ENST00000598938 QSER1Q2KHR3 1735 aa24.34■■□□□ 1.49
LIG1-216ENST00000598938 SHANK3Q9BYB0 1731 aa24.34■■□□□ 1.49
LIG1-216ENST00000598938 ZCRB1Q8TBF4 217 aaKnown RBP24.33■■□□□ 1.49
LIG1-216ENST00000598938 FHDC1Q9C0D6 1143 aaPredicted RBP24.33■■□□□ 1.49
LIG1-216ENST00000598938 HMOX1P09601 288 aa24.32■■□□□ 1.48
LIG1-216ENST00000598938 ZNF784Q8NCA9 323 aaPredicted RBP24.32■■□□□ 1.48
LIG1-216ENST00000598938 UTRNP46939 3433 aa24.31■■□□□ 1.48
LIG1-216ENST00000598938 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.31■■□□□ 1.48
LIG1-216ENST00000598938 COL24A1Q17RW2 1714 aa24.29■■□□□ 1.48
LIG1-216ENST00000598938 U2AF1L5P0DN76 240 aaPredicted RBP24.28■■□□□ 1.48
LIG1-216ENST00000598938 U2AF1Q01081 240 aaKnown RBP eCLIP24.28■■□□□ 1.48
LIG1-216ENST00000598938 SPG7Q9UQ90 795 aa24.28■■□□□ 1.48
LIG1-216ENST00000598938 RSPH6AQ9H0K4 717 aa24.27■■□□□ 1.48
LIG1-216ENST00000598938 PCDH11XQ9BZA7 1347 aa24.27■■□□□ 1.48
LIG1-216ENST00000598938 PCDH11YQ9BZA8 1340 aa24.27■■□□□ 1.48
LIG1-216ENST00000598938 DDX54Q8TDD1 881 aaKnown RBP24.26■■□□□ 1.47
LIG1-216ENST00000598938 ARXQ96QS3 562 aa24.26■■□□□ 1.47
LIG1-216ENST00000598938 AMOTQ4VCS5 1084 aa24.25■■□□□ 1.47
LIG1-216ENST00000598938 PLEKHO1Q53GL0 409 aaPredicted RBP24.25■■□□□ 1.47
LIG1-216ENST00000598938 KAT6BQ8WYB5 2073 aa24.24■■□□□ 1.47
LIG1-216ENST00000598938 CYP27B1O15528 508 aa24.24■■□□□ 1.47
LIG1-216ENST00000598938 FCHSD2O94868 740 aa24.24■■□□□ 1.47
LIG1-216ENST00000598938 CCDC184Q52MB2 194 aa24.24■■□□□ 1.47
LIG1-216ENST00000598938 DIEXFQ68CQ4 756 aaKnown RBP24.24■■□□□ 1.47
LIG1-216ENST00000598938 PRKAR2BP31323 418 aa24.22■■□□□ 1.47
LIG1-216ENST00000598938 SLC16A10Q8TF71 515 aa24.22■■□□□ 1.47
LIG1-216ENST00000598938 ACSBG1Q96GR2 724 aa24.22■■□□□ 1.47
LIG1-216ENST00000598938 PHKG2P15735 406 aa24.2■■□□□ 1.46
LIG1-216ENST00000598938 NKX1-1Q15270 411 aaPredicted RBP24.19■■□□□ 1.46
LIG1-216ENST00000598938 SLC27A3Q5K4L6 730 aa24.19■■□□□ 1.46
LIG1-216ENST00000598938 ZNF530Q6P9A1 599 aaPredicted RBP24.19■■□□□ 1.46
LIG1-216ENST00000598938 IFNL2Q8IZJ0 200 aa24.19■■□□□ 1.46
LIG1-216ENST00000598938 WDR43Q15061 677 aaKnown RBP eCLIP24.18■■□□□ 1.46
LIG1-216ENST00000598938 ZNF827Q17R98 1081 aa24.18■■□□□ 1.46
LIG1-216ENST00000598938 TUBGCP6Q96RT7 1819 aa24.18■■□□□ 1.46
LIG1-216ENST00000598938 LY75O60449 1722 aa24.18■■□□□ 1.46
LIG1-216ENST00000598938 MTHFSDQ2M296 383 aaKnown RBP24.17■■□□□ 1.46
LIG1-216ENST00000598938 PHACTR3Q96KR7 559 aa24.17■■□□□ 1.46
LIG1-216ENST00000598938 PLEKHF1Q96S99 279 aa24.17■■□□□ 1.46
LIG1-216ENST00000598938 MRS2Q9HD23 443 aa24.17■■□□□ 1.46
LIG1-216ENST00000598938 LRRC4BQ9NT99 713 aa24.16■■□□□ 1.46
LIG1-216ENST00000598938 DOT1LQ8TEK3 1739 aa24.15■■□□□ 1.46
LIG1-216ENST00000598938 C1QTNF8P60827 252 aa24.15■■□□□ 1.46
LIG1-216ENST00000598938 AKT1S1Q96B36 256 aa24.15■■□□□ 1.46
LIG1-216ENST00000598938 PNNQ9H307 717 aaKnown RBP24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 495.8 ms