RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 PLSCR1O15162 318 aa14.84□□□□□ -0.03
VRK3-214ENST00000598553 CDCA8Q53HL2 280 aa14.84□□□□□ -0.03
VRK3-214ENST00000598553 NSD2O96028 1365 aa14.84□□□□□ -0.03
VRK3-214ENST00000598553 EIF4G2P78344 907 aaKnown RBP eCLIP14.83□□□□□ -0.04
VRK3-214ENST00000598553 INSRP06213 1382 aa14.83□□□□□ -0.04
VRK3-214ENST00000598553 FLT4P35916 1363 aa14.83□□□□□ -0.04
VRK3-214ENST00000598553 TXNRD1Q16881 649 aa14.82□□□□□ -0.04
VRK3-214ENST00000598553 DDX54Q8TDD1 881 aaKnown RBP14.82□□□□□ -0.04
VRK3-214ENST00000598553 NCAPD2Q15021 1401 aa14.81□□□□□ -0.04
VRK3-214ENST00000598553 KCNQ4P56696 695 aa14.8□□□□□ -0.04
VRK3-214ENST00000598553 QSER1Q2KHR3 1735 aa14.79□□□□□ -0.04
VRK3-214ENST00000598553 TAF1LQ8IZX4 1826 aa14.79□□□□□ -0.04
VRK3-214ENST00000598553 PANK3Q9H999 370 aa14.79□□□□□ -0.04
VRK3-214ENST00000598553 LRRC4BQ9NT99 713 aa14.79□□□□□ -0.04
VRK3-214ENST00000598553 TNNT2P45379 298 aaPredicted RBP14.78□□□□□ -0.04
VRK3-214ENST00000598553 ZNF827Q17R98 1081 aa14.78□□□□□ -0.04
VRK3-214ENST00000598553 NBPF14Q5TI25 921 aa14.78□□□□□ -0.04
VRK3-214ENST00000598553 POLKQ9UBT6 870 aa14.78□□□□□ -0.04
VRK3-214ENST00000598553 SMG6Q86US8 1419 aaKnown RBP14.77□□□□□ -0.04
VRK3-214ENST00000598553 CGNL1Q0VF96 1302 aa14.77□□□□□ -0.04
VRK3-214ENST00000598553 PPM1GO15355 546 aaPredicted RBP14.77□□□□□ -0.05
VRK3-214ENST00000598553 ZCRB1Q8TBF4 217 aaKnown RBP14.77□□□□□ -0.05
VRK3-214ENST00000598553 KIF24Q5T7B8 1368 aa14.76□□□□□ -0.05
VRK3-214ENST00000598553 KIF7Q2M1P5 1343 aa14.76□□□□□ -0.05
VRK3-214ENST00000598553 PRIM1P49642 420 aaKnown RBP14.76□□□□□ -0.05
VRK3-214ENST00000598553 C5P01031 1676 aa14.75□□□□□ -0.05
VRK3-214ENST00000598553 CYP27B1O15528 508 aa14.75□□□□□ -0.05
VRK3-214ENST00000598553 COL24A1Q17RW2 1714 aa14.75□□□□□ -0.05
VRK3-214ENST00000598553 WASHC2AQ641Q2 1341 aa14.74□□□□□ -0.05
VRK3-214ENST00000598553 ZBTB7AO95365 584 aa14.74□□□□□ -0.05
VRK3-214ENST00000598553 SLC15A2Q16348 729 aa14.74□□□□□ -0.05
VRK3-214ENST00000598553 SYTL4Q96C24 671 aaPredicted RBP14.74□□□□□ -0.05
VRK3-214ENST00000598553 EYA1Q99502 592 aa14.74□□□□□ -0.05
VRK3-214ENST00000598553 VIRMAQ69YN4 1812 aaKnown RBP14.73□□□□□ -0.05
VRK3-214ENST00000598553 TATP17735 454 aaPredicted RBP14.72□□□□□ -0.05
VRK3-214ENST00000598553 PTGER2P43116 358 aa14.72□□□□□ -0.05
VRK3-214ENST00000598553 EIF4A2Q14240 407 aaKnown RBP14.72□□□□□ -0.05
VRK3-214ENST00000598553 RAPGEF4Q8WZA2 1011 aa14.72□□□□□ -0.05
VRK3-214ENST00000598553 STK32BQ9NY57 414 aa14.71□□□□□ -0.05
VRK3-214ENST00000598553 ATF5Q9Y2D1 282 aaPredicted RBP14.71□□□□□ -0.05
VRK3-214ENST00000598553 AKT1S1Q96B36 256 aa14.7□□□□□ -0.06
VRK3-214ENST00000598553 SPON1Q9HCB6 807 aa14.7□□□□□ -0.06
VRK3-214ENST00000598553 PCDH11XQ9BZA7 1347 aa14.69□□□□□ -0.06
VRK3-214ENST00000598553 PCDH11YQ9BZA8 1340 aa14.69□□□□□ -0.06
VRK3-214ENST00000598553 AMER1Q5JTC6 1135 aaPredicted RBP14.69□□□□□ -0.06
VRK3-214ENST00000598553 UBR3Q6ZT12 1888 aa14.69□□□□□ -0.06
VRK3-214ENST00000598553 SGIP1Q9BQI5 828 aa14.68□□□□□ -0.06
VRK3-214ENST00000598553 PNPLA7Q6ZV29 1317 aa14.67□□□□□ -0.06
VRK3-214ENST00000598553 IGSF1Q8N6C5 1336 aa14.67□□□□□ -0.06
VRK3-214ENST00000598553 C4BP0C0L5 1744 aa14.67□□□□□ -0.06
VRK3-214ENST00000598553 AEBP1Q8IUX7 1158 aa14.67□□□□□ -0.06
VRK3-214ENST00000598553 PER1O15534 1290 aaPredicted RBP14.65□□□□□ -0.06
VRK3-214ENST00000598553 MPRIPQ6WCQ1 1025 aa14.65□□□□□ -0.06
VRK3-214ENST00000598553 SMIM5Q71RC9 77 aa14.65□□□□□ -0.06
VRK3-214ENST00000598553 AMIGO3Q86WK7 504 aa14.65□□□□□ -0.06
VRK3-214ENST00000598553 SCN11AQ9UI33 1791 aa14.65□□□□□ -0.06
VRK3-214ENST00000598553 PALLDQ8WX93 1383 aa14.64□□□□□ -0.07
VRK3-214ENST00000598553 MORC1Q86VD1 984 aa14.64□□□□□ -0.07
VRK3-214ENST00000598553 CCNL1Q9UK58 526 aaPredicted RBP14.64□□□□□ -0.07
VRK3-214ENST00000598553 KDM6AO15550 1401 aaPredicted RBP14.64□□□□□ -0.07
VRK3-214ENST00000598553 PHKG2P15735 406 aa14.63□□□□□ -0.07
VRK3-214ENST00000598553 NKX1-1Q15270 411 aaPredicted RBP14.63□□□□□ -0.07
VRK3-214ENST00000598553 SLC27A3Q5K4L6 730 aa14.63□□□□□ -0.07
VRK3-214ENST00000598553 PIGBQ92521 554 aa14.63□□□□□ -0.07
VRK3-214ENST00000598553 PPP1R1BQ9UD71 204 aaPredicted RBP14.63□□□□□ -0.07
VRK3-214ENST00000598553 COL5A3P25940 1745 aaPredicted RBP14.63□□□□□ -0.07
VRK3-214ENST00000598553 COL3A1P02461 1466 aaPredicted RBP14.63□□□□□ -0.07
VRK3-214ENST00000598553 CC2D1BQ5T0F9 858 aaKnown RBP14.62□□□□□ -0.07
VRK3-214ENST00000598553 MTFR1LQ9H019 292 aa14.62□□□□□ -0.07
VRK3-214ENST00000598553 KNSTRNQ9Y448 316 aa14.62□□□□□ -0.07
VRK3-214ENST00000598553 CNGB1Q14028 1251 aaPredicted RBP14.61□□□□□ -0.07
VRK3-214ENST00000598553 FHDC1Q9C0D6 1143 aaPredicted RBP14.61□□□□□ -0.07
VRK3-214ENST00000598553 MYH14Q7Z406 1995 aaKnown RBP14.6□□□□□ -0.07
VRK3-214ENST00000598553 IL13P35225 146 aa14.6□□□□□ -0.07
VRK3-214ENST00000598553 COL23A1Q86Y22 540 aaPredicted RBP14.6□□□□□ -0.07
VRK3-214ENST00000598553 SPG7Q9UQ90 795 aa14.6□□□□□ -0.07
VRK3-214ENST00000598553 TJP1Q07157 1748 aa14.59□□□□□ -0.07
VRK3-214ENST00000598553 ASAP1Q9ULH1 1129 aa14.59□□□□□ -0.07
VRK3-214ENST00000598553 KDRP35968 1356 aa14.59□□□□□ -0.07
VRK3-214ENST00000598553 ITPK1Q13572 414 aa14.58□□□□□ -0.08
VRK3-214ENST00000598553 LINC00116Q8NCU8 138 aa14.58□□□□□ -0.08
VRK3-214ENST00000598553 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.58□□□□□ -0.08
VRK3-214ENST00000598553 TFCP2L1Q9NZI6 479 aa14.58□□□□□ -0.08
VRK3-214ENST00000598553 C4AP0C0L4 1744 aa14.58□□□□□ -0.08
VRK3-214ENST00000598553 MTHFSP49914 203 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 MSL1Q68DK7 614 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 SULT6B1Q6IMI4 303 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 IFNL2Q8IZJ0 200 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 SLC4A9Q96Q91 983 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 SYT17Q9BSW7 474 aa14.57□□□□□ -0.08
VRK3-214ENST00000598553 ZNF831Q5JPB2 1677 aa14.56□□□□□ -0.08
VRK3-214ENST00000598553 ADAMTS7Q9UKP4 1686 aa14.56□□□□□ -0.08
VRK3-214ENST00000598553 ATG3Q9NT62 314 aa14.56□□□□□ -0.08
VRK3-214ENST00000598553 HMOX1P09601 288 aa14.55□□□□□ -0.08
VRK3-214ENST00000598553 ZNF530Q6P9A1 599 aaPredicted RBP14.55□□□□□ -0.08
VRK3-214ENST00000598553 ARXQ96QS3 562 aa14.55□□□□□ -0.08
VRK3-214ENST00000598553 CHD4Q14839 1912 aa14.54□□□□□ -0.08
VRK3-214ENST00000598553 LOC102724428A0A0B4J2F2 783 aa14.54□□□□□ -0.08
VRK3-214ENST00000598553 SIK1P57059 783 aa14.54□□□□□ -0.08
VRK3-214ENST00000598553 TMOD3Q9NYL9 352 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms