RNA–Protein interactions for RNA: ENST00000597848.1

CHMP2A-204, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-204ENST00000597848 KRT27Q7Z3Y8 459 aa29.47■■■□□ 2.31
CHMP2A-204ENST00000597848 MIER1Q8N108 512 aa29.47■■■□□ 2.31
CHMP2A-204ENST00000597848 OVOS2A0A0G2JMS6 1433 aa29.45■■■□□ 2.31
CHMP2A-204ENST00000597848 FCHSD2O94868 740 aa29.45■■■□□ 2.31
CHMP2A-204ENST00000597848 SPG7Q9UQ90 795 aa29.45■■■□□ 2.31
CHMP2A-204ENST00000597848 PRKAR2BP31323 418 aa29.44■■■□□ 2.3
CHMP2A-204ENST00000597848 PLEKHO1Q53GL0 409 aaPredicted RBP29.44■■■□□ 2.3
CHMP2A-204ENST00000597848 DDX54Q8TDD1 881 aaKnown RBP29.44■■■□□ 2.3
CHMP2A-204ENST00000597848 RSPH6AQ9H0K4 717 aa29.44■■■□□ 2.3
CHMP2A-204ENST00000597848 WNK3Q9BYP7 1800 aa29.43■■■□□ 2.3
CHMP2A-204ENST00000597848 ILDR2Q71H61 639 aa29.41■■■□□ 2.3
CHMP2A-204ENST00000597848 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.41■■■□□ 2.3
CHMP2A-204ENST00000597848 PARP4Q9UKK3 1724 aaKnown RBP29.41■■■□□ 2.3
CHMP2A-204ENST00000597848 ADAMTS8Q9UP79 889 aa29.41■■■□□ 2.3
CHMP2A-204ENST00000597848 TNS2Q63HR2 1409 aa29.4■■■□□ 2.3
CHMP2A-204ENST00000597848 AMOTQ4VCS5 1084 aa29.4■■■□□ 2.3
CHMP2A-204ENST00000597848 FAM182BQ5T319 152 aa29.4■■■□□ 2.3
CHMP2A-204ENST00000597848 PNNQ9H307 717 aaKnown RBP29.4■■■□□ 2.3
CHMP2A-204ENST00000597848 LRRC37A3O60309 1634 aa29.39■■■□□ 2.3
CHMP2A-204ENST00000597848 CCER2I3L3R5 266 aa29.39■■■□□ 2.3
CHMP2A-204ENST00000597848 NEFMP07197 916 aa29.39■■■□□ 2.3
CHMP2A-204ENST00000597848 MARCH10Q8NA82 808 aaPredicted RBP29.39■■■□□ 2.3
CHMP2A-204ENST00000597848 PNISRQ8TF01 805 aaKnown RBP29.38■■■□□ 2.29
CHMP2A-204ENST00000597848 PCDH11XQ9BZA7 1347 aa29.38■■■□□ 2.29
CHMP2A-204ENST00000597848 PCDH11YQ9BZA8 1340 aa29.38■■■□□ 2.29
CHMP2A-204ENST00000597848 ZNF530Q6P9A1 599 aaPredicted RBP29.36■■■□□ 2.29
CHMP2A-204ENST00000597848 PLEKHG2Q9H7P9 1386 aa29.36■■■□□ 2.29
CHMP2A-204ENST00000597848 BRWD3Q6RI45 1802 aa29.36■■■□□ 2.29
CHMP2A-204ENST00000597848 PHACTR3Q96KR7 559 aa29.35■■■□□ 2.29
CHMP2A-204ENST00000597848 CYP27B1O15528 508 aa29.33■■■□□ 2.29
CHMP2A-204ENST00000597848 MTHFSDQ2M296 383 aaKnown RBP29.33■■■□□ 2.29
CHMP2A-204ENST00000597848 CCDC146Q8IYE0 955 aa29.33■■■□□ 2.29
CHMP2A-204ENST00000597848 IFNL2Q8IZJ0 200 aa29.33■■■□□ 2.29
CHMP2A-204ENST00000597848 MAPK8IP3Q9UPT6 1336 aa29.33■■■□□ 2.29
CHMP2A-204ENST00000597848 C1orf141Q5JVX7 400 aa29.32■■■□□ 2.28
CHMP2A-204ENST00000597848 FAM9BQ8IZU0 186 aa29.32■■■□□ 2.28
CHMP2A-204ENST00000597848 FAM196AQ6ZSG2 479 aa29.31■■■□□ 2.28
CHMP2A-204ENST00000597848 GAS2L2Q8NHY3 880 aa29.31■■■□□ 2.28
CHMP2A-204ENST00000597848 PLEKHF1Q96S99 279 aa29.31■■■□□ 2.28
CHMP2A-204ENST00000597848 PHKG2P15735 406 aa29.3■■■□□ 2.28
CHMP2A-204ENST00000597848 PKD1L3Q7Z443 1732 aa29.28■■■□□ 2.28
CHMP2A-204ENST00000597848 RUNDC1Q96C34 613 aa29.28■■■□□ 2.28
CHMP2A-204ENST00000597848 AKAP4Q5JQC9 854 aa29.26■■■□□ 2.27
CHMP2A-204ENST00000597848 HSP90AB1P08238 724 aaKnown RBP29.25■■■□□ 2.27
CHMP2A-204ENST00000597848 ACSBG1Q96GR2 724 aa29.24■■■□□ 2.27
CHMP2A-204ENST00000597848 SHANK3Q9BYB0 1731 aa29.23■■■□□ 2.27
CHMP2A-204ENST00000597848 NKX1-1Q15270 411 aaPredicted RBP29.23■■■□□ 2.27
CHMP2A-204ENST00000597848 MPRIPQ6WCQ1 1025 aa29.22■■■□□ 2.27
CHMP2A-204ENST00000597848 GNAT3A8MTJ3 354 aa29.21■■■□□ 2.27
CHMP2A-204ENST00000597848 NFE2L2Q16236 605 aa29.21■■■□□ 2.27
CHMP2A-204ENST00000597848 DCAF5Q96JK2 942 aa29.21■■■□□ 2.27
CHMP2A-204ENST00000597848 TRIM37O94972 964 aa29.2■■■□□ 2.26
CHMP2A-204ENST00000597848 SYTL4Q96C24 671 aaPredicted RBP29.2■■■□□ 2.26
CHMP2A-204ENST00000597848 BCL9O00512 1426 aa29.19■■■□□ 2.26
CHMP2A-204ENST00000597848 MAP3K5Q99683 1374 aa29.18■■■□□ 2.26
CHMP2A-204ENST00000597848 PRIM1P49642 420 aaKnown RBP29.18■■■□□ 2.26
CHMP2A-204ENST00000597848 NEUROD2Q15784 382 aa29.18■■■□□ 2.26
CHMP2A-204ENST00000597848 RRP7AQ9Y3A4 280 aaKnown RBP29.18■■■□□ 2.26
CHMP2A-204ENST00000597848 APAF1O14727 1248 aa29.17■■■□□ 2.26
CHMP2A-204ENST00000597848 TMPOP42166 694 aaKnown RBP29.17■■■□□ 2.26
CHMP2A-204ENST00000597848 RIPK4P57078 832 aa29.17■■■□□ 2.26
CHMP2A-204ENST00000597848 RTF1Q92541 710 aaKnown RBP29.17■■■□□ 2.26
CHMP2A-204ENST00000597848 KCNQ2O43526 872 aa29.16■■■□□ 2.26
CHMP2A-204ENST00000597848 LGR6Q9HBX8 967 aa29.16■■■□□ 2.26
CHMP2A-204ENST00000597848 RNMTO43148 476 aaKnown RBP29.15■■■□□ 2.26
CHMP2A-204ENST00000597848 BCL11BQ9C0K0 894 aaPredicted RBP29.14■■■□□ 2.26
CHMP2A-204ENST00000597848 KDM6AO15550 1401 aaPredicted RBP29.13■■■□□ 2.25
CHMP2A-204ENST00000597848 ERVV-2B6SEH9 535 aa29.13■■■□□ 2.25
CHMP2A-204ENST00000597848 CABP4P57796 275 aa29.13■■■□□ 2.25
CHMP2A-204ENST00000597848 SENP3-EIF4A1A0A087X0R7 540 aa29.12■■■□□ 2.25
CHMP2A-204ENST00000597848 HTATSF1O43719 755 aaKnown RBP29.12■■■□□ 2.25
CHMP2A-204ENST00000597848 SF3B2Q13435 895 aaKnown RBP29.12■■■□□ 2.25
CHMP2A-204ENST00000597848 PTF1AQ7RTS3 328 aa29.12■■■□□ 2.25
CHMP2A-204ENST00000597848 KAT6BQ8WYB5 2073 aa29.12■■■□□ 2.25
CHMP2A-204ENST00000597848 MCM10Q7L590 875 aa29.11■■■□□ 2.25
CHMP2A-204ENST00000597848 IL17REQ8NFR9 667 aa29.11■■■□□ 2.25
CHMP2A-204ENST00000597848 TMOD3Q9NYL9 352 aa29.11■■■□□ 2.25
CHMP2A-204ENST00000597848 DCTN1Q14203 1278 aa29.1■■■□□ 2.25
CHMP2A-204ENST00000597848 LMOD3Q0VAK6 560 aa29.09■■■□□ 2.25
CHMP2A-204ENST00000597848 UPF1Q92900 1129 aaKnown RBP eCLIP29.09■■■□□ 2.25
CHMP2A-204ENST00000597848 CCDC125Q86Z20 511 aa29.08■■■□□ 2.25
CHMP2A-204ENST00000597848 APBA3O96018 575 aa29.07■■■□□ 2.24
CHMP2A-204ENST00000597848 TEFQ10587 303 aa29.07■■■□□ 2.24
CHMP2A-204ENST00000597848 NFATC2IPQ8NCF5 419 aa29.07■■■□□ 2.24
CHMP2A-204ENST00000597848 DOT1LQ8TEK3 1739 aa29.07■■■□□ 2.24
CHMP2A-204ENST00000597848 PIGBQ92521 554 aa29.07■■■□□ 2.24
CHMP2A-204ENST00000597848 SLC52A2Q9HAB3 445 aa29.06■■■□□ 2.24
CHMP2A-204ENST00000597848 SBF2Q86WG5 1849 aa29.04■■■□□ 2.24
CHMP2A-204ENST00000597848 THUMPD2Q9BTF0 503 aaKnown RBP29.04■■■□□ 2.24
CHMP2A-204ENST00000597848 SALL2Q9Y467 1007 aaPredicted RBP29.04■■■□□ 2.24
CHMP2A-204ENST00000597848 TOGARAM1Q9Y4F4 1720 aa29.03■■■□□ 2.24
CHMP2A-204ENST00000597848 TRIM35Q9UPQ4 493 aa29.03■■■□□ 2.24
CHMP2A-204ENST00000597848 NHSQ6T4R5 1651 aa29.02■■■□□ 2.24
CHMP2A-204ENST00000597848 CEMIPQ8WUJ3 1361 aa29.02■■■□□ 2.24
CHMP2A-204ENST00000597848 SCN11AQ9UI33 1791 aa29.01■■■□□ 2.23
CHMP2A-204ENST00000597848 BAG6P46379 1132 aa29■■■□□ 2.23
CHMP2A-204ENST00000597848 DLG5Q8TDM6 1919 aa29■■■□□ 2.23
CHMP2A-204ENST00000597848 ITGB4P16144 1822 aa28.97■■■□□ 2.23
CHMP2A-204ENST00000597848 DEFB132Q7Z7B7 95 aa28.97■■■□□ 2.23
CHMP2A-204ENST00000597848 SMARCC1Q92922 1105 aaPredicted RBP28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms