RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-208ENST00000596624 AMPHP49418 695 aa14.88□□□□□ -0.03
PNKP-208ENST00000596624 TMF1P82094 1093 aa14.88□□□□□ -0.03
PNKP-208ENST00000596624 ZCRB1Q8TBF4 217 aaKnown RBP14.88□□□□□ -0.03
PNKP-208ENST00000596624 DDX54Q8TDD1 881 aaKnown RBP14.87□□□□□ -0.03
PNKP-208ENST00000596624 FHDC1Q9C0D6 1143 aaPredicted RBP14.87□□□□□ -0.03
PNKP-208ENST00000596624 INSRP06213 1382 aa14.86□□□□□ -0.03
PNKP-208ENST00000596624 PRIM1P49642 420 aaKnown RBP14.86□□□□□ -0.03
PNKP-208ENST00000596624 NBPF6Q5VWK0 638 aa14.86□□□□□ -0.03
PNKP-208ENST00000596624 LTV1Q96GA3 475 aaPredicted RBP14.86□□□□□ -0.03
PNKP-208ENST00000596624 NBPF4Q96M43 638 aa14.86□□□□□ -0.03
PNKP-208ENST00000596624 TIMELESSQ9UNS1 1208 aa14.86□□□□□ -0.03
PNKP-208ENST00000596624 NCAPD2Q15021 1401 aa14.85□□□□□ -0.03
PNKP-208ENST00000596624 TRIM26Q12899 539 aaPredicted RBP14.85□□□□□ -0.03
PNKP-208ENST00000596624 CDCA8Q53HL2 280 aa14.85□□□□□ -0.03
PNKP-208ENST00000596624 ARXQ96QS3 562 aa14.85□□□□□ -0.03
PNKP-208ENST00000596624 DOT1LQ8TEK3 1739 aa14.85□□□□□ -0.03
PNKP-208ENST00000596624 PNPLA7Q6ZV29 1317 aa14.85□□□□□ -0.03
PNKP-208ENST00000596624 RRS1Q15050 365 aaKnown RBP14.84□□□□□ -0.03
PNKP-208ENST00000596624 CARD14Q9BXL6 1004 aa14.84□□□□□ -0.03
PNKP-208ENST00000596624 GGNBP2Q9H3C7 697 aa14.84□□□□□ -0.03
PNKP-208ENST00000596624 TUBGCP6Q96RT7 1819 aa14.83□□□□□ -0.04
PNKP-208ENST00000596624 CHD4Q14839 1912 aa14.83□□□□□ -0.04
PNKP-208ENST00000596624 FLT4P35916 1363 aa14.83□□□□□ -0.04
PNKP-208ENST00000596624 KIF20BQ96Q89 1820 aa14.82□□□□□ -0.04
PNKP-208ENST00000596624 HSP90AB2PQ58FF8 381 aa14.82□□□□□ -0.04
PNKP-208ENST00000596624 SMG6Q86US8 1419 aaKnown RBP14.81□□□□□ -0.04
PNKP-208ENST00000596624 ANKRD26Q9UPS8 1709 aa14.8□□□□□ -0.04
PNKP-208ENST00000596624 CLSPNQ9HAW4 1339 aa14.8□□□□□ -0.04
PNKP-208ENST00000596624 HMGB2P26583 209 aaKnown RBP14.79□□□□□ -0.04
PNKP-208ENST00000596624 RAPGEF4Q8WZA2 1011 aa14.79□□□□□ -0.04
PNKP-208ENST00000596624 PKD1L3Q7Z443 1732 aa14.78□□□□□ -0.04
PNKP-208ENST00000596624 PCDH11XQ9BZA7 1347 aa14.78□□□□□ -0.04
PNKP-208ENST00000596624 PCDH11YQ9BZA8 1340 aa14.78□□□□□ -0.04
PNKP-208ENST00000596624 TATP17735 454 aaPredicted RBP14.78□□□□□ -0.04
PNKP-208ENST00000596624 NKX1-1Q15270 411 aaPredicted RBP14.78□□□□□ -0.04
PNKP-208ENST00000596624 ZNF784Q8NCA9 323 aaPredicted RBP14.78□□□□□ -0.04
PNKP-208ENST00000596624 SYTL4Q96C24 671 aaPredicted RBP14.78□□□□□ -0.04
PNKP-208ENST00000596624 TFCP2L1Q9NZI6 479 aa14.78□□□□□ -0.04
PNKP-208ENST00000596624 WASHC2AQ641Q2 1341 aa14.77□□□□□ -0.04
PNKP-208ENST00000596624 CYP27B1O15528 508 aa14.77□□□□□ -0.05
PNKP-208ENST00000596624 KCNQ4P56696 695 aa14.77□□□□□ -0.05
PNKP-208ENST00000596624 USHBP1Q8N6Y0 703 aa14.77□□□□□ -0.05
PNKP-208ENST00000596624 CCNL1Q9UK58 526 aaPredicted RBP14.77□□□□□ -0.05
PNKP-208ENST00000596624 NSD3Q9BZ95 1437 aa14.76□□□□□ -0.05
PNKP-208ENST00000596624 PLEKHG2Q9H7P9 1386 aa14.76□□□□□ -0.05
PNKP-208ENST00000596624 TAF1LQ8IZX4 1826 aa14.76□□□□□ -0.05
PNKP-208ENST00000596624 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.76□□□□□ -0.05
PNKP-208ENST00000596624 GOLGB1Q14789 3259 aaKnown RBP14.75□□□□□ -0.05
PNKP-208ENST00000596624 POLD1P28340 1107 aa14.75□□□□□ -0.05
PNKP-208ENST00000596624 COL23A1Q86Y22 540 aaPredicted RBP14.75□□□□□ -0.05
PNKP-208ENST00000596624 EMILIN1Q9Y6C2 1016 aa14.75□□□□□ -0.05
PNKP-208ENST00000596624 ITGB4P16144 1822 aa14.75□□□□□ -0.05
PNKP-208ENST00000596624 TOGARAM1Q9Y4F4 1720 aa14.75□□□□□ -0.05
PNKP-208ENST00000596624 C5P01031 1676 aa14.74□□□□□ -0.05
PNKP-208ENST00000596624 MAP2P11137 1827 aaKnown RBP14.73□□□□□ -0.05
PNKP-208ENST00000596624 PALLDQ8WX93 1383 aa14.73□□□□□ -0.05
PNKP-208ENST00000596624 FLAD1Q8NFF5 587 aa14.72□□□□□ -0.05
PNKP-208ENST00000596624 SMARCC1Q92922 1105 aaPredicted RBP14.72□□□□□ -0.05
PNKP-208ENST00000596624 POLKQ9UBT6 870 aa14.72□□□□□ -0.05
PNKP-208ENST00000596624 EYA1Q99502 592 aa14.71□□□□□ -0.05
PNKP-208ENST00000596624 NLGN2Q8NFZ4 835 aa14.7□□□□□ -0.06
PNKP-208ENST00000596624 PIGBQ92521 554 aa14.7□□□□□ -0.06
PNKP-208ENST00000596624 C4BP0C0L5 1744 aa14.69□□□□□ -0.06
PNKP-208ENST00000596624 GPR162Q16538 588 aa14.69□□□□□ -0.06
PNKP-208ENST00000596624 MPRIPQ6WCQ1 1025 aa14.69□□□□□ -0.06
PNKP-208ENST00000596624 SPG7Q9UQ90 795 aa14.69□□□□□ -0.06
PNKP-208ENST00000596624 UBR3Q6ZT12 1888 aa14.69□□□□□ -0.06
PNKP-208ENST00000596624 CD2APQ9Y5K6 639 aa14.68□□□□□ -0.06
PNKP-208ENST00000596624 AMIGO3Q86WK7 504 aa14.67□□□□□ -0.06
PNKP-208ENST00000596624 GRIN3BO60391 1043 aa14.66□□□□□ -0.06
PNKP-208ENST00000596624 PHKG2P15735 406 aa14.66□□□□□ -0.06
PNKP-208ENST00000596624 YBX3P16989 372 aaKnown RBP eCLIP14.66□□□□□ -0.06
PNKP-208ENST00000596624 IGSF1Q8N6C5 1336 aa14.66□□□□□ -0.06
PNKP-208ENST00000596624 ZNF831Q5JPB2 1677 aa14.65□□□□□ -0.06
PNKP-208ENST00000596624 LOC102724428A0A0B4J2F2 783 aa14.65□□□□□ -0.06
PNKP-208ENST00000596624 SSFA2P28290 1259 aa14.65□□□□□ -0.06
PNKP-208ENST00000596624 SIK1P57059 783 aa14.65□□□□□ -0.06
PNKP-208ENST00000596624 EIF4A2Q14240 407 aaKnown RBP14.65□□□□□ -0.06
PNKP-208ENST00000596624 IFNL2Q8IZJ0 200 aa14.65□□□□□ -0.06
PNKP-208ENST00000596624 C1QTNF8P60827 252 aa14.64□□□□□ -0.07
PNKP-208ENST00000596624 PPM1GO15355 546 aaPredicted RBP14.63□□□□□ -0.07
PNKP-208ENST00000596624 KDRP35968 1356 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.62□□□□□ -0.07
PNKP-208ENST00000596624 EIF4G2P78344 907 aaKnown RBP eCLIP14.62□□□□□ -0.07
PNKP-208ENST00000596624 MSL1Q68DK7 614 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 LINC00116Q8NCU8 138 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 AK7Q96M32 723 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 ATG3Q9NT62 314 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 TMOD3Q9NYL9 352 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 ASAP1Q9ULH1 1129 aa14.62□□□□□ -0.07
PNKP-208ENST00000596624 ERVV-2B6SEH9 535 aa14.61□□□□□ -0.07
PNKP-208ENST00000596624 MSH5O43196 834 aa14.61□□□□□ -0.07
PNKP-208ENST00000596624 ITPK1Q13572 414 aa14.61□□□□□ -0.07
PNKP-208ENST00000596624 KLHL34Q8N239 644 aa14.61□□□□□ -0.07
PNKP-208ENST00000596624 PANK3Q9H999 370 aa14.6□□□□□ -0.07
PNKP-208ENST00000596624 ADCY9O60503 1353 aa14.6□□□□□ -0.07
PNKP-208ENST00000596624 HSPA5P11021 654 aaKnown RBP14.59□□□□□ -0.07
PNKP-208ENST00000596624 RC3H1Q5TC82 1133 aaKnown RBP14.59□□□□□ -0.07
PNKP-208ENST00000596624 DCAF5Q96JK2 942 aa14.59□□□□□ -0.07
PNKP-208ENST00000596624 SLC4A9Q96Q91 983 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms