RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 SMG6Q86US8 1419 aaKnown RBP20.67■□□□□ 0.9
PNKP-202ENST00000593706 SGIP1Q9BQI5 828 aa20.66■□□□□ 0.9
PNKP-202ENST00000593706 LRRC4BQ9NT99 713 aa20.66■□□□□ 0.9
PNKP-202ENST00000593706 ITGB4P16144 1822 aa20.66■□□□□ 0.9
PNKP-202ENST00000593706 TAF1LQ8IZX4 1826 aa20.66■□□□□ 0.9
PNKP-202ENST00000593706 SLC27A3Q5K4L6 730 aa20.65■□□□□ 0.9
PNKP-202ENST00000593706 ARXQ96QS3 562 aa20.65■□□□□ 0.9
PNKP-202ENST00000593706 USP47Q96K76 1375 aa20.64■□□□□ 0.89
PNKP-202ENST00000593706 FBLN1P23142 703 aa20.64■□□□□ 0.89
PNKP-202ENST00000593706 PRIM1P49642 420 aaKnown RBP20.62■□□□□ 0.89
PNKP-202ENST00000593706 TMF1P82094 1093 aa20.62■□□□□ 0.89
PNKP-202ENST00000593706 RRS1Q15050 365 aaKnown RBP20.62■□□□□ 0.89
PNKP-202ENST00000593706 ZCRB1Q8TBF4 217 aaKnown RBP20.62■□□□□ 0.89
PNKP-202ENST00000593706 MAP2P11137 1827 aaKnown RBP20.62■□□□□ 0.89
PNKP-202ENST00000593706 ANKRD26Q9UPS8 1709 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 MAP3K5Q99683 1374 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 CLSPNQ9HAW4 1339 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 AKT1S1Q96B36 256 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 GGNBP2Q9H3C7 697 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 PKD1L3Q7Z443 1732 aa20.61■□□□□ 0.89
PNKP-202ENST00000593706 NSD2O96028 1365 aa20.6■□□□□ 0.89
PNKP-202ENST00000593706 KLHL34Q8N239 644 aa20.6■□□□□ 0.89
PNKP-202ENST00000593706 PCGF6Q9BYE7 350 aa20.6■□□□□ 0.89
PNKP-202ENST00000593706 TFCP2L1Q9NZI6 479 aa20.6■□□□□ 0.89
PNKP-202ENST00000593706 TOGARAM1Q9Y4F4 1720 aa20.6■□□□□ 0.89
PNKP-202ENST00000593706 PNPLA7Q6ZV29 1317 aa20.59■□□□□ 0.89
PNKP-202ENST00000593706 POLD1P28340 1107 aa20.59■□□□□ 0.89
PNKP-202ENST00000593706 KCNQ4P56696 695 aa20.59■□□□□ 0.89
PNKP-202ENST00000593706 USHBP1Q8N6Y0 703 aa20.59■□□□□ 0.89
PNKP-202ENST00000593706 SLC16A10Q8TF71 515 aa20.58■□□□□ 0.89
PNKP-202ENST00000593706 RAPGEF4Q8WZA2 1011 aa20.58■□□□□ 0.89
PNKP-202ENST00000593706 CGNL1Q0VF96 1302 aa20.57■□□□□ 0.88
PNKP-202ENST00000593706 FYB1O15117 783 aa20.57■□□□□ 0.88
PNKP-202ENST00000593706 FLT4P35916 1363 aa20.57■□□□□ 0.88
PNKP-202ENST00000593706 NBPF6Q5VWK0 638 aa20.56■□□□□ 0.88
PNKP-202ENST00000593706 NBPF4Q96M43 638 aa20.56■□□□□ 0.88
PNKP-202ENST00000593706 CCNL1Q9UK58 526 aaPredicted RBP20.56■□□□□ 0.88
PNKP-202ENST00000593706 CDCA8Q53HL2 280 aa20.55■□□□□ 0.88
PNKP-202ENST00000593706 ZNF784Q8NCA9 323 aaPredicted RBP20.55■□□□□ 0.88
PNKP-202ENST00000593706 TATP17735 454 aaPredicted RBP20.54■□□□□ 0.88
PNKP-202ENST00000593706 INSRP06213 1382 aa20.54■□□□□ 0.88
PNKP-202ENST00000593706 PCDH11XQ9BZA7 1347 aa20.53■□□□□ 0.88
PNKP-202ENST00000593706 PCDH11YQ9BZA8 1340 aa20.53■□□□□ 0.88
PNKP-202ENST00000593706 MSH5O43196 834 aa20.53■□□□□ 0.88
PNKP-202ENST00000593706 GPR162Q16538 588 aa20.53■□□□□ 0.88
PNKP-202ENST00000593706 KIF24Q5T7B8 1368 aa20.53■□□□□ 0.88
PNKP-202ENST00000593706 UBR3Q6ZT12 1888 aa20.52■□□□□ 0.88
PNKP-202ENST00000593706 PELP1Q8IZL8 1130 aaKnown RBP20.52■□□□□ 0.88
PNKP-202ENST00000593706 TIMELESSQ9UNS1 1208 aa20.52■□□□□ 0.88
PNKP-202ENST00000593706 C4BP0C0L5 1744 aa20.52■□□□□ 0.88
PNKP-202ENST00000593706 NSD3Q9BZ95 1437 aa20.52■□□□□ 0.87
PNKP-202ENST00000593706 HSP90AB2PQ58FF8 381 aa20.51■□□□□ 0.87
PNKP-202ENST00000593706 PALLDQ8WX93 1383 aa20.47■□□□□ 0.87
PNKP-202ENST00000593706 EMILIN1Q9Y6C2 1016 aa20.46■□□□□ 0.87
PNKP-202ENST00000593706 PPM1GO15355 546 aaPredicted RBP20.45■□□□□ 0.86
PNKP-202ENST00000593706 MPRIPQ6WCQ1 1025 aa20.45■□□□□ 0.86
PNKP-202ENST00000593706 COL23A1Q86Y22 540 aaPredicted RBP20.45■□□□□ 0.86
PNKP-202ENST00000593706 NLGN2Q8NFZ4 835 aa20.45■□□□□ 0.86
PNKP-202ENST00000593706 MSL1Q68DK7 614 aa20.44■□□□□ 0.86
PNKP-202ENST00000593706 HMGB2P26583 209 aaKnown RBP20.43■□□□□ 0.86
PNKP-202ENST00000593706 CARD14Q9BXL6 1004 aa20.43■□□□□ 0.86
PNKP-202ENST00000593706 NCAPD2Q15021 1401 aa20.43■□□□□ 0.86
PNKP-202ENST00000593706 CYP27B1O15528 508 aa20.42■□□□□ 0.86
PNKP-202ENST00000593706 FLAD1Q8NFF5 587 aa20.4■□□□□ 0.86
PNKP-202ENST00000593706 AK7Q96M32 723 aa20.4■□□□□ 0.86
PNKP-202ENST00000593706 SMARCC1Q92922 1105 aaPredicted RBP20.39■□□□□ 0.85
PNKP-202ENST00000593706 SPG7Q9UQ90 795 aa20.39■□□□□ 0.85
PNKP-202ENST00000593706 POLR3GLQ9BT43 218 aa20.38■□□□□ 0.85
PNKP-202ENST00000593706 SENP3-EIF4A1A0A087X0R7 540 aa20.37■□□□□ 0.85
PNKP-202ENST00000593706 CCER1Q8TC90 406 aaPredicted RBP20.37■□□□□ 0.85
PNKP-202ENST00000593706 CEP350Q5VT06 3117 aa20.37■□□□□ 0.85
PNKP-202ENST00000593706 WASHC2AQ641Q2 1341 aa20.36■□□□□ 0.85
PNKP-202ENST00000593706 GRIN3BO60391 1043 aa20.36■□□□□ 0.85
PNKP-202ENST00000593706 YBX3P16989 372 aaKnown RBP eCLIP20.36■□□□□ 0.85
PNKP-202ENST00000593706 C1QTNF8P60827 252 aa20.36■□□□□ 0.85
PNKP-202ENST00000593706 COL5A3P25940 1745 aaPredicted RBP20.36■□□□□ 0.85
PNKP-202ENST00000593706 GIGYF1O75420 1035 aaPredicted RBP20.35■□□□□ 0.85
PNKP-202ENST00000593706 PHF14O94880 888 aa20.35■□□□□ 0.85
PNKP-202ENST00000593706 VIRMAQ69YN4 1812 aaKnown RBP20.34■□□□□ 0.85
PNKP-202ENST00000593706 PIGBQ92521 554 aa20.34■□□□□ 0.85
PNKP-202ENST00000593706 TMOD3Q9NYL9 352 aa20.34■□□□□ 0.85
PNKP-202ENST00000593706 ZNF831Q5JPB2 1677 aa20.33■□□□□ 0.85
PNKP-202ENST00000593706 EYA1Q99502 592 aa20.33■□□□□ 0.85
PNKP-202ENST00000593706 TNNT2P45379 298 aaPredicted RBP20.32■□□□□ 0.84
PNKP-202ENST00000593706 NKX1-1Q15270 411 aaPredicted RBP20.32■□□□□ 0.84
PNKP-202ENST00000593706 CD2APQ9Y5K6 639 aa20.32■□□□□ 0.84
PNKP-202ENST00000593706 KIF13BQ9NQT8 1826 aa20.32■□□□□ 0.84
PNKP-202ENST00000593706 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.31■□□□□ 0.84
PNKP-202ENST00000593706 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.31■□□□□ 0.84
PNKP-202ENST00000593706 POLKQ9UBT6 870 aa20.31■□□□□ 0.84
PNKP-202ENST00000593706 N4BP2Q86UW6 1770 aaPredicted RBP20.31■□□□□ 0.84
PNKP-202ENST00000593706 C4AP0C0L4 1744 aa20.3■□□□□ 0.84
PNKP-202ENST00000593706 LOC102724428A0A0B4J2F2 783 aa20.3■□□□□ 0.84
PNKP-202ENST00000593706 SIK1P57059 783 aa20.3■□□□□ 0.84
PNKP-202ENST00000593706 IFNL2Q8IZJ0 200 aa20.3■□□□□ 0.84
PNKP-202ENST00000593706 PHKG2P15735 406 aa20.29■□□□□ 0.84
PNKP-202ENST00000593706 SSFA2P28290 1259 aa20.29■□□□□ 0.84
PNKP-202ENST00000593706 AMIGO3Q86WK7 504 aa20.29■□□□□ 0.84
PNKP-202ENST00000593706 LINC00116Q8NCU8 138 aa20.29■□□□□ 0.84
PNKP-202ENST00000593706 EIF4A2Q14240 407 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms