RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 COL24A1Q17RW2 1714 aa22.96■■□□□ 1.27
LIG1-205ENST00000593425 SYTL4Q96C24 671 aaPredicted RBP22.96■■□□□ 1.27
LIG1-205ENST00000593425 GGNBP2Q9H3C7 697 aa22.96■■□□□ 1.27
LIG1-205ENST00000593425 FYB1O15117 783 aa22.95■■□□□ 1.26
LIG1-205ENST00000593425 PRIM1P49642 420 aaKnown RBP22.94■■□□□ 1.26
LIG1-205ENST00000593425 KCNQ4P56696 695 aa22.94■■□□□ 1.26
LIG1-205ENST00000593425 TMF1P82094 1093 aa22.94■■□□□ 1.26
LIG1-205ENST00000593425 SLC27A3Q5K4L6 730 aa22.94■■□□□ 1.26
LIG1-205ENST00000593425 ZCRB1Q8TBF4 217 aaKnown RBP22.94■■□□□ 1.26
LIG1-205ENST00000593425 ARXQ96QS3 562 aa22.94■■□□□ 1.26
LIG1-205ENST00000593425 NBPF6Q5VWK0 638 aa22.93■■□□□ 1.26
LIG1-205ENST00000593425 USHBP1Q8N6Y0 703 aa22.93■■□□□ 1.26
LIG1-205ENST00000593425 NBPF4Q96M43 638 aa22.93■■□□□ 1.26
LIG1-205ENST00000593425 PNPLA7Q6ZV29 1317 aa22.92■■□□□ 1.26
LIG1-205ENST00000593425 MAP3K5Q99683 1374 aa22.91■■□□□ 1.26
LIG1-205ENST00000593425 CHD4Q14839 1912 aa22.9■■□□□ 1.26
LIG1-205ENST00000593425 SMG6Q86US8 1419 aaKnown RBP22.9■■□□□ 1.26
LIG1-205ENST00000593425 HSP90AB2PQ58FF8 381 aa22.87■■□□□ 1.25
LIG1-205ENST00000593425 SLC16A10Q8TF71 515 aa22.87■■□□□ 1.25
LIG1-205ENST00000593425 INSRP06213 1382 aa22.87■■□□□ 1.25
LIG1-205ENST00000593425 TOGARAM1Q9Y4F4 1720 aa22.86■■□□□ 1.25
LIG1-205ENST00000593425 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
LIG1-205ENST00000593425 TFCP2L1Q9NZI6 479 aa22.86■■□□□ 1.25
LIG1-205ENST00000593425 C5P01031 1676 aa22.86■■□□□ 1.25
LIG1-205ENST00000593425 FLT4P35916 1363 aa22.86■■□□□ 1.25
LIG1-205ENST00000593425 CGNL1Q0VF96 1302 aa22.85■■□□□ 1.25
LIG1-205ENST00000593425 RAPGEF4Q8WZA2 1011 aa22.85■■□□□ 1.25
LIG1-205ENST00000593425 CCNL1Q9UK58 526 aaPredicted RBP22.85■■□□□ 1.25
LIG1-205ENST00000593425 ZNF784Q8NCA9 323 aaPredicted RBP22.84■■□□□ 1.25
LIG1-205ENST00000593425 ANKRD26Q9UPS8 1709 aa22.84■■□□□ 1.25
LIG1-205ENST00000593425 NSD3Q9BZ95 1437 aa22.83■■□□□ 1.25
LIG1-205ENST00000593425 PKD1L3Q7Z443 1732 aa22.83■■□□□ 1.25
LIG1-205ENST00000593425 TATP17735 454 aaPredicted RBP22.83■■□□□ 1.25
LIG1-205ENST00000593425 KLHL34Q8N239 644 aa22.83■■□□□ 1.25
LIG1-205ENST00000593425 CARD14Q9BXL6 1004 aa22.83■■□□□ 1.25
LIG1-205ENST00000593425 KIF24Q5T7B8 1368 aa22.83■■□□□ 1.25
LIG1-205ENST00000593425 UTRNP46939 3433 aa22.83■■□□□ 1.24
LIG1-205ENST00000593425 TAF1LQ8IZX4 1826 aa22.82■■□□□ 1.24
LIG1-205ENST00000593425 POLD1P28340 1107 aa22.82■■□□□ 1.24
LIG1-205ENST00000593425 CDCA8Q53HL2 280 aa22.82■■□□□ 1.24
LIG1-205ENST00000593425 ITGB4P16144 1822 aa22.81■■□□□ 1.24
LIG1-205ENST00000593425 EMILIN1Q9Y6C2 1016 aa22.81■■□□□ 1.24
LIG1-205ENST00000593425 PCDH11XQ9BZA7 1347 aa22.81■■□□□ 1.24
LIG1-205ENST00000593425 PCDH11YQ9BZA8 1340 aa22.81■■□□□ 1.24
LIG1-205ENST00000593425 NCAPD2Q15021 1401 aa22.78■■□□□ 1.24
LIG1-205ENST00000593425 COL23A1Q86Y22 540 aaPredicted RBP22.78■■□□□ 1.24
LIG1-205ENST00000593425 CYP27B1O15528 508 aa22.77■■□□□ 1.24
LIG1-205ENST00000593425 GPR162Q16538 588 aa22.77■■□□□ 1.24
LIG1-205ENST00000593425 NLGN2Q8NFZ4 835 aa22.77■■□□□ 1.24
LIG1-205ENST00000593425 MAP2P11137 1827 aaKnown RBP22.77■■□□□ 1.24
LIG1-205ENST00000593425 PALLDQ8WX93 1383 aa22.76■■□□□ 1.23
LIG1-205ENST00000593425 MSH5O43196 834 aa22.75■■□□□ 1.23
LIG1-205ENST00000593425 C4BP0C0L5 1744 aa22.74■■□□□ 1.23
LIG1-205ENST00000593425 MPRIPQ6WCQ1 1025 aa22.74■■□□□ 1.23
LIG1-205ENST00000593425 MSL1Q68DK7 614 aa22.73■■□□□ 1.23
LIG1-205ENST00000593425 PELP1Q8IZL8 1130 aaKnown RBP22.73■■□□□ 1.23
LIG1-205ENST00000593425 PPM1GO15355 546 aaPredicted RBP22.72■■□□□ 1.23
LIG1-205ENST00000593425 UBR3Q6ZT12 1888 aa22.71■■□□□ 1.23
LIG1-205ENST00000593425 WASHC2AQ641Q2 1341 aa22.69■■□□□ 1.22
LIG1-205ENST00000593425 NKX1-1Q15270 411 aaPredicted RBP22.67■■□□□ 1.22
LIG1-205ENST00000593425 AMIGO3Q86WK7 504 aa22.67■■□□□ 1.22
LIG1-205ENST00000593425 PIGBQ92521 554 aa22.67■■□□□ 1.22
LIG1-205ENST00000593425 EYA1Q99502 592 aa22.67■■□□□ 1.22
LIG1-205ENST00000593425 TIMELESSQ9UNS1 1208 aa22.67■■□□□ 1.22
LIG1-205ENST00000593425 YBX3P16989 372 aaKnown RBP eCLIP22.66■■□□□ 1.22
LIG1-205ENST00000593425 POLKQ9UBT6 870 aa22.66■■□□□ 1.22
LIG1-205ENST00000593425 SMARCC1Q92922 1105 aaPredicted RBP22.65■■□□□ 1.22
LIG1-205ENST00000593425 SPG7Q9UQ90 795 aa22.65■■□□□ 1.22
LIG1-205ENST00000593425 FLAD1Q8NFF5 587 aa22.64■■□□□ 1.21
LIG1-205ENST00000593425 POLR3GLQ9BT43 218 aa22.64■■□□□ 1.21
LIG1-205ENST00000593425 SMIM5Q71RC9 77 aa22.63■■□□□ 1.21
LIG1-205ENST00000593425 AK7Q96M32 723 aa22.63■■□□□ 1.21
LIG1-205ENST00000593425 GOLGB1Q14789 3259 aaKnown RBP22.61■■□□□ 1.21
LIG1-205ENST00000593425 PHF14O94880 888 aa22.61■■□□□ 1.21
LIG1-205ENST00000593425 HMGB2P26583 209 aaKnown RBP22.61■■□□□ 1.21
LIG1-205ENST00000593425 C1QTNF8P60827 252 aa22.61■■□□□ 1.21
LIG1-205ENST00000593425 EIF4A2Q14240 407 aaKnown RBP22.61■■□□□ 1.21
LIG1-205ENST00000593425 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.61■■□□□ 1.21
LIG1-205ENST00000593425 CLSPNQ9HAW4 1339 aa22.6■■□□□ 1.21
LIG1-205ENST00000593425 PHKG2P15735 406 aa22.6■■□□□ 1.21
LIG1-205ENST00000593425 TNNT2P45379 298 aaPredicted RBP22.6■■□□□ 1.21
LIG1-205ENST00000593425 LINC00116Q8NCU8 138 aa22.6■■□□□ 1.21
LIG1-205ENST00000593425 LOC102724428A0A0B4J2F2 783 aa22.59■■□□□ 1.21
LIG1-205ENST00000593425 SIK1P57059 783 aa22.59■■□□□ 1.21
LIG1-205ENST00000593425 PCGF6Q9BYE7 350 aa22.59■■□□□ 1.21
LIG1-205ENST00000593425 TMOD3Q9NYL9 352 aa22.59■■□□□ 1.21
LIG1-205ENST00000593425 CD2APQ9Y5K6 639 aa22.59■■□□□ 1.21
LIG1-205ENST00000593425 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.58■■□□□ 1.21
LIG1-205ENST00000593425 GRIN3BO60391 1043 aa22.58■■□□□ 1.21
LIG1-205ENST00000593425 IFNL2Q8IZJ0 200 aa22.58■■□□□ 1.21
LIG1-205ENST00000593425 ASAP1Q9ULH1 1129 aa22.58■■□□□ 1.21
LIG1-205ENST00000593425 ITPK1Q13572 414 aa22.57■■□□□ 1.2
LIG1-205ENST00000593425 SENP3-EIF4A1A0A087X0R7 540 aa22.56■■□□□ 1.2
LIG1-205ENST00000593425 SSFA2P28290 1259 aa22.55■■□□□ 1.2
LIG1-205ENST00000593425 IGSF1Q8N6C5 1336 aa22.55■■□□□ 1.2
LIG1-205ENST00000593425 PLEKHG2Q9H7P9 1386 aa22.54■■□□□ 1.2
LIG1-205ENST00000593425 GIGYF1O75420 1035 aaPredicted RBP22.54■■□□□ 1.2
LIG1-205ENST00000593425 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
LIG1-205ENST00000593425 ATG3Q9NT62 314 aa22.54■■□□□ 1.2
LIG1-205ENST00000593425 KDRP35968 1356 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms