RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 RGPD1P0DJD0 1748 aa12.98□□□□□ -0.33
DDX39A-220ENST00000593008 TNS2Q63HR2 1409 aa12.97□□□□□ -0.33
DDX39A-220ENST00000593008 WNK3Q9BYP7 1800 aa12.97□□□□□ -0.33
DDX39A-220ENST00000593008 FAM208AQ9UK61 1670 aaKnown RBP12.97□□□□□ -0.33
DDX39A-220ENST00000593008 IL13P35225 146 aa12.97□□□□□ -0.33
DDX39A-220ENST00000593008 AEBP1Q8IUX7 1158 aa12.97□□□□□ -0.33
DDX39A-220ENST00000593008 DDX54Q8TDD1 881 aaKnown RBP12.97□□□□□ -0.33
DDX39A-220ENST00000593008 MRS2Q9HD23 443 aa12.97□□□□□ -0.33
DDX39A-220ENST00000593008 SRCAPQ6ZRS2 3230 aa12.96□□□□□ -0.33
DDX39A-220ENST00000593008 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.33
DDX39A-220ENST00000593008 CAMKK2Q96RR4 588 aa12.96□□□□□ -0.33
DDX39A-220ENST00000593008 TNS1Q9HBL0 1735 aaKnown RBP12.96□□□□□ -0.34
DDX39A-220ENST00000593008 KIF24Q5T7B8 1368 aa12.95□□□□□ -0.34
DDX39A-220ENST00000593008 KCNQ2O43526 872 aa12.95□□□□□ -0.34
DDX39A-220ENST00000593008 MEGF6O75095 1541 aa12.94□□□□□ -0.34
DDX39A-220ENST00000593008 PSDA5PKW4 1024 aaPredicted RBP12.94□□□□□ -0.34
DDX39A-220ENST00000593008 U2SURPO15042 1029 aaKnown RBP12.94□□□□□ -0.34
DDX39A-220ENST00000593008 HMOX1P09601 288 aa12.94□□□□□ -0.34
DDX39A-220ENST00000593008 EYA1Q99502 592 aa12.94□□□□□ -0.34
DDX39A-220ENST00000593008 BCL11BQ9C0K0 894 aaPredicted RBP12.94□□□□□ -0.34
DDX39A-220ENST00000593008 DIAPH1O60610 1272 aaKnown RBP12.93□□□□□ -0.34
DDX39A-220ENST00000593008 RAPGEF4Q8WZA2 1011 aa12.93□□□□□ -0.34
DDX39A-220ENST00000593008 IGSF1Q8N6C5 1336 aa12.92□□□□□ -0.34
DDX39A-220ENST00000593008 ZCRB1Q8TBF4 217 aaKnown RBP12.92□□□□□ -0.34
DDX39A-220ENST00000593008 CFAP53Q96M91 514 aa12.92□□□□□ -0.34
DDX39A-220ENST00000593008 BCL9O00512 1426 aa12.91□□□□□ -0.34
DDX39A-220ENST00000593008 NCAPD2Q15021 1401 aa12.91□□□□□ -0.34
DDX39A-220ENST00000593008 CCER2I3L3R5 266 aa12.91□□□□□ -0.34
DDX39A-220ENST00000593008 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
DDX39A-220ENST00000593008 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
DDX39A-220ENST00000593008 PNISRQ8TF01 805 aaKnown RBP12.91□□□□□ -0.34
DDX39A-220ENST00000593008 U2AF1L5P0DN76 240 aaPredicted RBP12.9□□□□□ -0.34
DDX39A-220ENST00000593008 U2AF1Q01081 240 aaKnown RBP eCLIP12.9□□□□□ -0.34
DDX39A-220ENST00000593008 R3HDM1Q15032 1099 aaKnown RBP12.9□□□□□ -0.34
DDX39A-220ENST00000593008 SULT6B1Q6IMI4 303 aa12.9□□□□□ -0.34
DDX39A-220ENST00000593008 FAM9BQ8IZU0 186 aa12.9□□□□□ -0.34
DDX39A-220ENST00000593008 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
DDX39A-220ENST00000593008 ADAMTS8Q9UP79 889 aa12.89□□□□□ -0.35
DDX39A-220ENST00000593008 RSPH6AQ9H0K4 717 aa12.88□□□□□ -0.35
DDX39A-220ENST00000593008 SBF2Q86WG5 1849 aa12.88□□□□□ -0.35
DDX39A-220ENST00000593008 KDRP35968 1356 aa12.87□□□□□ -0.35
DDX39A-220ENST00000593008 PLSCR1O15162 318 aa12.87□□□□□ -0.35
DDX39A-220ENST00000593008 PRKAR2BP31323 418 aa12.87□□□□□ -0.35
DDX39A-220ENST00000593008 PRIM1P49642 420 aaKnown RBP12.87□□□□□ -0.35
DDX39A-220ENST00000593008 PROM2Q8N271 834 aa12.87□□□□□ -0.35
DDX39A-220ENST00000593008 SHANK3Q9BYB0 1731 aa12.86□□□□□ -0.35
DDX39A-220ENST00000593008 WDR43Q15061 677 aaKnown RBP eCLIP12.86□□□□□ -0.35
DDX39A-220ENST00000593008 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
DDX39A-220ENST00000593008 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
DDX39A-220ENST00000593008 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
DDX39A-220ENST00000593008 CYP27B1O15528 508 aa12.85□□□□□ -0.35
DDX39A-220ENST00000593008 TXNRD1Q16881 649 aa12.85□□□□□ -0.35
DDX39A-220ENST00000593008 NBPF14Q5TI25 921 aa12.85□□□□□ -0.35
DDX39A-220ENST00000593008 NHSQ6T4R5 1651 aa12.84□□□□□ -0.35
DDX39A-220ENST00000593008 PLEKHF1Q96S99 279 aa12.84□□□□□ -0.35
DDX39A-220ENST00000593008 SPG7Q9UQ90 795 aa12.84□□□□□ -0.35
DDX39A-220ENST00000593008 NUDCQ9Y266 331 aa12.84□□□□□ -0.35
DDX39A-220ENST00000593008 RRP7AQ9Y3A4 280 aaKnown RBP12.84□□□□□ -0.35
DDX39A-220ENST00000593008 NUP188Q5SRE5 1749 aa12.83□□□□□ -0.36
DDX39A-220ENST00000593008 PKD1L3Q7Z443 1732 aa12.83□□□□□ -0.36
DDX39A-220ENST00000593008 ANO8Q9HCE9 1232 aaPredicted RBP12.83□□□□□ -0.36
DDX39A-220ENST00000593008 RREB1Q92766 1687 aa12.83□□□□□ -0.36
DDX39A-220ENST00000593008 KCNQ4P56696 695 aa12.82□□□□□ -0.36
DDX39A-220ENST00000593008 KAT6BQ8WYB5 2073 aa12.81□□□□□ -0.36
DDX39A-220ENST00000593008 MPRIPQ6WCQ1 1025 aa12.81□□□□□ -0.36
DDX39A-220ENST00000593008 DOT1LQ8TEK3 1739 aa12.8□□□□□ -0.36
DDX39A-220ENST00000593008 MTHFSDQ2M296 383 aaKnown RBP12.8□□□□□ -0.36
DDX39A-220ENST00000593008 LRRC4BQ9NT99 713 aa12.8□□□□□ -0.36
DDX39A-220ENST00000593008 SALL2Q9Y467 1007 aaPredicted RBP12.8□□□□□ -0.36
DDX39A-220ENST00000593008 BTAF1O14981 1849 aa12.8□□□□□ -0.36
DDX39A-220ENST00000593008 PHKG2P15735 406 aa12.79□□□□□ -0.36
DDX39A-220ENST00000593008 YTHDC1Q96MU7 727 aaKnown RBP12.79□□□□□ -0.36
DDX39A-220ENST00000593008 PDGFDQ9GZP0 370 aaPredicted RBP12.79□□□□□ -0.36
DDX39A-220ENST00000593008 STK32BQ9NY57 414 aa12.79□□□□□ -0.36
DDX39A-220ENST00000593008 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.79□□□□□ -0.36
DDX39A-220ENST00000593008 RGPD3A6NKT7 1758 aaPredicted RBP12.79□□□□□ -0.36
DDX39A-220ENST00000593008 RGPD4Q7Z3J3 1758 aa12.79□□□□□ -0.36
DDX39A-220ENST00000593008 APAF1O14727 1248 aa12.78□□□□□ -0.36
DDX39A-220ENST00000593008 FCHSD2O94868 740 aa12.78□□□□□ -0.36
DDX39A-220ENST00000593008 PLEKHO1Q53GL0 409 aaPredicted RBP12.78□□□□□ -0.36
DDX39A-220ENST00000593008 ZNF530Q6P9A1 599 aaPredicted RBP12.78□□□□□ -0.36
DDX39A-220ENST00000593008 IFNL2Q8IZJ0 200 aa12.78□□□□□ -0.36
DDX39A-220ENST00000593008 TOGARAM1Q9Y4F4 1720 aa12.78□□□□□ -0.36
DDX39A-220ENST00000593008 NKX1-1Q15270 411 aaPredicted RBP12.77□□□□□ -0.37
DDX39A-220ENST00000593008 NEUROD2Q15784 382 aa12.77□□□□□ -0.37
DDX39A-220ENST00000593008 SLC15A2Q16348 729 aa12.77□□□□□ -0.37
DDX39A-220ENST00000593008 PIGBQ92521 554 aa12.77□□□□□ -0.37
DDX39A-220ENST00000593008 RUNDC1Q96C34 613 aa12.77□□□□□ -0.37
DDX39A-220ENST00000593008 THUMPD2Q9BTF0 503 aaKnown RBP12.77□□□□□ -0.37
DDX39A-220ENST00000593008 KDM6AO15550 1401 aaPredicted RBP12.77□□□□□ -0.37
DDX39A-220ENST00000593008 DLG5Q8TDM6 1919 aa12.76□□□□□ -0.37
DDX39A-220ENST00000593008 DCTN1Q14203 1278 aa12.76□□□□□ -0.37
DDX39A-220ENST00000593008 ZNF827Q17R98 1081 aa12.76□□□□□ -0.37
DDX39A-220ENST00000593008 CCNL1Q9UK58 526 aaPredicted RBP12.76□□□□□ -0.37
DDX39A-220ENST00000593008 MAPK8IP3Q9UPT6 1336 aa12.76□□□□□ -0.37
DDX39A-220ENST00000593008 AMOTQ4VCS5 1084 aa12.75□□□□□ -0.37
DDX39A-220ENST00000593008 SLC27A3Q5K4L6 730 aa12.75□□□□□ -0.37
DDX39A-220ENST00000593008 TMOD3Q9NYL9 352 aa12.75□□□□□ -0.37
DDX39A-220ENST00000593008 PALLDQ8WX93 1383 aa12.74□□□□□ -0.37
DDX39A-220ENST00000593008 ZBTB7AO95365 584 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms