RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.81■□□□□ 0.12
SMAD4-211ENST00000590499 RIMBP2O15034 1052 aa15.81■□□□□ 0.12
SMAD4-211ENST00000590499 SLIT3O75094 1523 aa15.81■□□□□ 0.12
SMAD4-211ENST00000590499 NUTM2GQ5VZR2 741 aa15.81■□□□□ 0.12
SMAD4-211ENST00000590499 EFCAB3Q8N7B9 438 aa15.81■□□□□ 0.12
SMAD4-211ENST00000590499 ABTB2Q8N961 1025 aa15.81■□□□□ 0.12
SMAD4-211ENST00000590499 ZFP91Q96JP5 570 aaPredicted RBP15.81■□□□□ 0.12
SMAD4-211ENST00000590499 KIAA0232Q92628 1395 aa15.79■□□□□ 0.12
SMAD4-211ENST00000590499 TMEM92Q6UXU6 159 aa15.79■□□□□ 0.12
SMAD4-211ENST00000590499 GJD4Q96KN9 370 aaPredicted RBP15.79■□□□□ 0.12
SMAD4-211ENST00000590499 USP54Q70EL1 1684 aa15.79■□□□□ 0.12
SMAD4-211ENST00000590499 LMO7Q8WWI1 1683 aa15.79■□□□□ 0.12
SMAD4-211ENST00000590499 CPDO75976 1380 aa15.78■□□□□ 0.12
SMAD4-211ENST00000590499 TTC21BQ7Z4L5 1316 aa15.78■□□□□ 0.12
SMAD4-211ENST00000590499 VPS72Q15906 364 aa15.78■□□□□ 0.12
SMAD4-211ENST00000590499 KTN1Q86UP2 1357 aaKnown RBP15.77■□□□□ 0.12
SMAD4-211ENST00000590499 SLC24A1O60721 1099 aa15.77■□□□□ 0.12
SMAD4-211ENST00000590499 NLRP13Q86W25 1043 aa15.77■□□□□ 0.12
SMAD4-211ENST00000590499 PRDM11Q9NQV5 511 aa15.77■□□□□ 0.12
SMAD4-211ENST00000590499 NINLQ9Y2I6 1382 aa15.76■□□□□ 0.11
SMAD4-211ENST00000590499 TTC21AQ8NDW8 1320 aa15.76■□□□□ 0.11
SMAD4-211ENST00000590499 SLC12A5Q9H2X9 1139 aa15.76■□□□□ 0.11
SMAD4-211ENST00000590499 BTG4Q9NY30 223 aa15.76■□□□□ 0.11
SMAD4-211ENST00000590499 GCP02774 474 aa15.75■□□□□ 0.11
SMAD4-211ENST00000590499 ZNF687Q8N1G0 1237 aa15.75■□□□□ 0.11
SMAD4-211ENST00000590499 ZSWIM6Q9HCJ5 1215 aa15.75■□□□□ 0.11
SMAD4-211ENST00000590499 A0A1W2PP64 1363 aa15.75■□□□□ 0.11
SMAD4-211ENST00000590499 CAMTA1Q9Y6Y1 1673 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 BRWD3Q6RI45 1802 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 NLRP6P59044 892 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 ZC3H6P61129 1189 aaKnown RBP15.74■□□□□ 0.11
SMAD4-211ENST00000590499 MICALL2Q8IY33 904 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 TMC1Q8TDI8 760 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 COL18A1P39060 1754 aa15.74■□□□□ 0.11
SMAD4-211ENST00000590499 NFAT5O94916 1531 aa15.73■□□□□ 0.11
SMAD4-211ENST00000590499 CHRNA2Q15822 529 aa15.73■□□□□ 0.11
SMAD4-211ENST00000590499 TAOK2Q9UL54 1235 aa15.73■□□□□ 0.11
SMAD4-211ENST00000590499 EDC4Q6P2E9 1401 aaKnown RBP15.73■□□□□ 0.11
SMAD4-211ENST00000590499 USP31Q70CQ4 1352 aa15.73■□□□□ 0.11
SMAD4-211ENST00000590499 ONECUT3O60422 494 aaPredicted RBP15.72■□□□□ 0.11
SMAD4-211ENST00000590499 TMF1P82094 1093 aa15.72■□□□□ 0.11
SMAD4-211ENST00000590499 GPR153Q6NV75 609 aa15.72■□□□□ 0.11
SMAD4-211ENST00000590499 MYOM1P52179 1685 aa15.72■□□□□ 0.11
SMAD4-211ENST00000590499 HDGFL2Q7Z4V5 671 aaPredicted RBP15.71■□□□□ 0.11
SMAD4-211ENST00000590499 UPF1Q92900 1129 aaKnown RBP eCLIP15.71■□□□□ 0.11
SMAD4-211ENST00000590499 TERF2IPQ9NYB0 399 aa15.71■□□□□ 0.11
SMAD4-211ENST00000590499 SPATA31A5Q5VU36 1347 aa15.7■□□□□ 0.1
SMAD4-211ENST00000590499 SPATA31A7Q8IWB4 1347 aa15.7■□□□□ 0.1
SMAD4-211ENST00000590499 THSD7AQ9UPZ6 1657 aa15.7■□□□□ 0.1
SMAD4-211ENST00000590499 RGL2O15211 777 aa15.69■□□□□ 0.1
SMAD4-211ENST00000590499 AATKQ6ZMQ8 1374 aa15.69■□□□□ 0.1
SMAD4-211ENST00000590499 ANKRD36BQ8N2N9 1353 aa15.69■□□□□ 0.1
SMAD4-211ENST00000590499 COL5A2P05997 1499 aaPredicted RBP15.69■□□□□ 0.1
SMAD4-211ENST00000590499 OVOS2A0A0J9YW53 1432 aa15.68■□□□□ 0.1
SMAD4-211ENST00000590499 OVOS2Q6IE36 1432 aa15.68■□□□□ 0.1
SMAD4-211ENST00000590499 NME9Q86XW9 330 aa15.68■□□□□ 0.1
SMAD4-211ENST00000590499 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.68■□□□□ 0.1
SMAD4-211ENST00000590499 CCDC9Q9Y3X0 531 aaKnown RBP15.68■□□□□ 0.1
SMAD4-211ENST00000590499 ABCC6O95255 1503 aa15.68■□□□□ 0.1
SMAD4-211ENST00000590499 SPATA31A1Q5TZJ5 1347 aa15.68■□□□□ 0.1
SMAD4-211ENST00000590499 CDCA8Q53HL2 280 aa15.67■□□□□ 0.1
SMAD4-211ENST00000590499 ARHGEF25Q86VW2 580 aa15.67■□□□□ 0.1
SMAD4-211ENST00000590499 SEPT12Q8IYM1 358 aa15.67■□□□□ 0.1
SMAD4-211ENST00000590499 KCNH5Q8NCM2 988 aa15.67■□□□□ 0.1
SMAD4-211ENST00000590499 RGPD5Q99666 1765 aa15.67■□□□□ 0.1
SMAD4-211ENST00000590499 BCL11BQ9C0K0 894 aaPredicted RBP15.66■□□□□ 0.1
SMAD4-211ENST00000590499 LTN1O94822 1766 aa15.65■□□□□ 0.1
SMAD4-211ENST00000590499 FAM98CQ17RN3 349 aaKnown RBP15.65■□□□□ 0.1
SMAD4-211ENST00000590499 STRN4Q9NRL3 753 aa15.65■□□□□ 0.1
SMAD4-211ENST00000590499 HSPA5P11021 654 aaKnown RBP15.64■□□□□ 0.09
SMAD4-211ENST00000590499 EIF4G2P78344 907 aaKnown RBP eCLIP15.64■□□□□ 0.09
SMAD4-211ENST00000590499 LARP1Q6PKG0 1096 aaKnown RBP15.64■□□□□ 0.09
SMAD4-211ENST00000590499 SOX12O15370 315 aa15.63■□□□□ 0.09
SMAD4-211ENST00000590499 MS4A4AQ96JQ5 239 aa15.63■□□□□ 0.09
SMAD4-211ENST00000590499 AXIN2Q9Y2T1 843 aa15.63■□□□□ 0.09
SMAD4-211ENST00000590499 STK24Q9Y6E0 443 aa15.63■□□□□ 0.09
SMAD4-211ENST00000590499 KIF20BQ96Q89 1820 aa15.62■□□□□ 0.09
SMAD4-211ENST00000590499 WNK3Q9BYP7 1800 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 CRB1P82279 1406 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 STK25O00506 426 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 PTGER2P43116 358 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 EVA1CP58658 441 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 BARGINQ6ZT62 677 aa15.61■□□□□ 0.09
SMAD4-211ENST00000590499 PARP4Q9UKK3 1724 aaKnown RBP15.6■□□□□ 0.09
SMAD4-211ENST00000590499 ZBTB7CA1YPR0 619 aa15.6■□□□□ 0.09
SMAD4-211ENST00000590499 KRT27Q7Z3Y8 459 aa15.6■□□□□ 0.09
SMAD4-211ENST00000590499 TCP11L2Q8N4U5 519 aa15.59■□□□□ 0.09
SMAD4-211ENST00000590499 CARD14Q9BXL6 1004 aa15.59■□□□□ 0.09
SMAD4-211ENST00000590499 WDR17Q8IZU2 1322 aa15.59■□□□□ 0.09
SMAD4-211ENST00000590499 FYB1O15117 783 aa15.58■□□□□ 0.08
SMAD4-211ENST00000590499 ARSIQ5FYB1 569 aa15.58■□□□□ 0.08
SMAD4-211ENST00000590499 USP35Q9P2H5 1018 aa15.58■□□□□ 0.08
SMAD4-211ENST00000590499 THRAP3Q9Y2W1 955 aaKnown RBP15.58■□□□□ 0.08
SMAD4-211ENST00000590499 A0A0G2JS52 829 aa15.57■□□□□ 0.08
SMAD4-211ENST00000590499 MYT1Q01538 1121 aa15.57■□□□□ 0.08
SMAD4-211ENST00000590499 NSD3Q9BZ95 1437 aa15.57■□□□□ 0.08
SMAD4-211ENST00000590499 COG3Q96JB2 828 aa15.56■□□□□ 0.08
SMAD4-211ENST00000590499 BLMP54132 1417 aaPredicted RBP15.56■□□□□ 0.08
SMAD4-211ENST00000590499 LRRC37A3O60309 1634 aa15.56■□□□□ 0.08
SMAD4-211ENST00000590499 CCDC125Q86Z20 511 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms