RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 EXOC5O00471 708 aa18.09■□□□□ 0.49
VMP1-210ENST00000589823 ONECUT3O60422 494 aaPredicted RBP18.09■□□□□ 0.49
VMP1-210ENST00000589823 PRKAR2BP31323 418 aa18.09■□□□□ 0.49
VMP1-210ENST00000589823 FAM9BQ8IZU0 186 aa18.09■□□□□ 0.49
VMP1-210ENST00000589823 WNK3Q9BYP7 1800 aa18.09■□□□□ 0.49
VMP1-210ENST00000589823 PARP4Q9UKK3 1724 aaKnown RBP18.09■□□□□ 0.49
VMP1-210ENST00000589823 OVOS2A0A0G2JMS6 1433 aa18.08■□□□□ 0.49
VMP1-210ENST00000589823 PLEKHG2Q9H7P9 1386 aa18.08■□□□□ 0.49
VMP1-210ENST00000589823 SEPT12Q8IYM1 358 aa18.08■□□□□ 0.48
VMP1-210ENST00000589823 SPG7Q9UQ90 795 aa18.08■□□□□ 0.48
VMP1-210ENST00000589823 DDB1Q16531 1140 aa18.07■□□□□ 0.48
VMP1-210ENST00000589823 AMOTQ4VCS5 1084 aa18.07■□□□□ 0.48
VMP1-210ENST00000589823 PLEKHO1Q53GL0 409 aaPredicted RBP18.07■□□□□ 0.48
VMP1-210ENST00000589823 ZCRB1Q8TBF4 217 aaKnown RBP18.07■□□□□ 0.48
VMP1-210ENST00000589823 THSD7AQ9UPZ6 1657 aa18.06■□□□□ 0.48
VMP1-210ENST00000589823 MAPK8IP3Q9UPT6 1336 aa18.06■□□□□ 0.48
VMP1-210ENST00000589823 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.06■□□□□ 0.488e-10■■□□□ 12.4
VMP1-210ENST00000589823 PDE3BQ13370 1112 aa18.05■□□□□ 0.48
VMP1-210ENST00000589823 TNS2Q63HR2 1409 aa18.05■□□□□ 0.48
VMP1-210ENST00000589823 CCDC146Q8IYE0 955 aa18.04■□□□□ 0.48
VMP1-210ENST00000589823 RUNDC1Q96C34 613 aa18.04■□□□□ 0.48
VMP1-210ENST00000589823 PLEKHF1Q96S99 279 aa18.04■□□□□ 0.48
VMP1-210ENST00000589823 PCDH11XQ9BZA7 1347 aa18.03■□□□□ 0.48
VMP1-210ENST00000589823 PCDH11YQ9BZA8 1340 aa18.03■□□□□ 0.48
VMP1-210ENST00000589823 LRRC37A3O60309 1634 aa18.03■□□□□ 0.48
VMP1-210ENST00000589823 RGS12O14924 1447 aa18.03■□□□□ 0.48
VMP1-210ENST00000589823 ZNF530Q6P9A1 599 aaPredicted RBP18.02■□□□□ 0.48
VMP1-210ENST00000589823 GAS2L2Q8NHY3 880 aa18.02■□□□□ 0.48
VMP1-210ENST00000589823 DDX54Q8TDD1 881 aaKnown RBP18.02■□□□□ 0.48
VMP1-210ENST00000589823 PHACTR3Q96KR7 559 aa18.02■□□□□ 0.48
VMP1-210ENST00000589823 PKD1L3Q7Z443 1732 aa18.01■□□□□ 0.47
VMP1-210ENST00000589823 MTHFSDQ2M296 383 aaKnown RBP18.01■□□□□ 0.47
VMP1-210ENST00000589823 C1orf141Q5JVX7 400 aa18.01■□□□□ 0.47
VMP1-210ENST00000589823 KRT27Q7Z3Y8 459 aa18■□□□□ 0.47
VMP1-210ENST00000589823 IFNL2Q8IZJ0 200 aa18■□□□□ 0.47
VMP1-210ENST00000589823 CYP27B1O15528 508 aa17.98■□□□□ 0.47
VMP1-210ENST00000589823 PHKG2P15735 406 aa17.98■□□□□ 0.47
VMP1-210ENST00000589823 NFE2L2Q16236 605 aa17.98■□□□□ 0.47
VMP1-210ENST00000589823 AKAP4Q5JQC9 854 aa17.98■□□□□ 0.47
VMP1-210ENST00000589823 HSP90AB1P08238 724 aaKnown RBP17.97■□□□□ 0.47
VMP1-210ENST00000589823 MARCH10Q8NA82 808 aaPredicted RBP17.97■□□□□ 0.47
VMP1-210ENST00000589823 APAF1O14727 1248 aa17.96■□□□□ 0.47
VMP1-210ENST00000589823 BRWD3Q6RI45 1802 aa17.95■□□□□ 0.46
VMP1-210ENST00000589823 SHANK3Q9BYB0 1731 aa17.95■□□□□ 0.46
VMP1-210ENST00000589823 MAP3K5Q99683 1374 aa17.95■□□□□ 0.46
VMP1-210ENST00000589823 GNAT3A8MTJ3 354 aa17.95■□□□□ 0.46
VMP1-210ENST00000589823 TMPOP42166 694 aaKnown RBP17.95■□□□□ 0.46
VMP1-210ENST00000589823 RTF1Q92541 710 aaKnown RBP17.95■□□□□ 0.46
VMP1-210ENST00000589823 RIPK4P57078 832 aa17.94■□□□□ 0.46
VMP1-210ENST00000589823 NEUROD2Q15784 382 aa17.94■□□□□ 0.46
VMP1-210ENST00000589823 RRP7AQ9Y3A4 280 aaKnown RBP17.94■□□□□ 0.46
VMP1-210ENST00000589823 LMOD3Q0VAK6 560 aa17.93■□□□□ 0.46
VMP1-210ENST00000589823 NKX1-1Q15270 411 aaPredicted RBP17.93■□□□□ 0.46
VMP1-210ENST00000589823 FAM182BQ5T319 152 aa17.93■□□□□ 0.46
VMP1-210ENST00000589823 DCAF5Q96JK2 942 aa17.93■□□□□ 0.46
VMP1-210ENST00000589823 HTATSF1O43719 755 aaKnown RBP17.92■□□□□ 0.46
VMP1-210ENST00000589823 FAM196AQ6ZSG2 479 aa17.92■□□□□ 0.46
VMP1-210ENST00000589823 MPRIPQ6WCQ1 1025 aa17.91■□□□□ 0.46
VMP1-210ENST00000589823 BCL9O00512 1426 aa17.89■□□□□ 0.46
VMP1-210ENST00000589823 SENP3-EIF4A1A0A087X0R7 540 aa17.89■□□□□ 0.45
VMP1-210ENST00000589823 RNMTO43148 476 aaKnown RBP17.89■□□□□ 0.45
VMP1-210ENST00000589823 NGEFQ8N5V2 710 aa17.89■□□□□ 0.45
VMP1-210ENST00000589823 KDM6AO15550 1401 aaPredicted RBP17.89■□□□□ 0.45
VMP1-210ENST00000589823 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
VMP1-210ENST00000589823 MCM10Q7L590 875 aa17.88■□□□□ 0.45
VMP1-210ENST00000589823 ACSBG1Q96GR2 724 aa17.88■□□□□ 0.45
VMP1-210ENST00000589823 LGR6Q9HBX8 967 aa17.88■□□□□ 0.45
VMP1-210ENST00000589823 SALL2Q9Y467 1007 aaPredicted RBP17.88■□□□□ 0.45
VMP1-210ENST00000589823 ERVV-2B6SEH9 535 aa17.87■□□□□ 0.45
VMP1-210ENST00000589823 TEFQ10587 303 aa17.87■□□□□ 0.45
VMP1-210ENST00000589823 DCTN1Q14203 1278 aa17.87■□□□□ 0.45
VMP1-210ENST00000589823 IL17REQ8NFR9 667 aa17.87■□□□□ 0.45
VMP1-210ENST00000589823 SYTL4Q96C24 671 aaPredicted RBP17.87■□□□□ 0.45
VMP1-210ENST00000589823 DLG5Q8TDM6 1919 aa17.86■□□□□ 0.45
VMP1-210ENST00000589823 PRIM1P49642 420 aaKnown RBP17.86■□□□□ 0.45
VMP1-210ENST00000589823 CABP4P57796 275 aa17.86■□□□□ 0.45
VMP1-210ENST00000589823 TRIM35Q9UPQ4 493 aa17.86■□□□□ 0.45
VMP1-210ENST00000589823 CCDC27Q2M243 656 aa17.85■□□□□ 0.45
VMP1-210ENST00000589823 DOT1LQ8TEK3 1739 aa17.85■□□□□ 0.45
VMP1-210ENST00000589823 CEMIPQ8WUJ3 1361 aa17.85■□□□□ 0.45
VMP1-210ENST00000589823 TMOD3Q9NYL9 352 aa17.85■□□□□ 0.45
VMP1-210ENST00000589823 HNRNPUQ00839 825 aaKnown RBP eCLIP17.84■□□□□ 0.45
VMP1-210ENST00000589823 CALD1Q05682 793 aaKnown RBP17.84■□□□□ 0.45
VMP1-210ENST00000589823 SLC52A2Q9HAB3 445 aa17.84■□□□□ 0.45
VMP1-210ENST00000589823 SCN11AQ9UI33 1791 aa17.84■□□□□ 0.45
VMP1-210ENST00000589823 ADAMTS7Q9UKP4 1686 aa17.83■□□□□ 0.45
VMP1-210ENST00000589823 THUMPD2Q9BTF0 503 aaKnown RBP17.83■□□□□ 0.44
VMP1-210ENST00000589823 TOGARAM1Q9Y4F4 1720 aa17.83■□□□□ 0.44
VMP1-210ENST00000589823 KCNQ2O43526 872 aa17.82■□□□□ 0.44
VMP1-210ENST00000589823 TRIM37O94972 964 aa17.82■□□□□ 0.44
VMP1-210ENST00000589823 WWC1Q8IX03 1113 aa17.82■□□□□ 0.44
VMP1-210ENST00000589823 NFATC2IPQ8NCF5 419 aa17.82■□□□□ 0.44
VMP1-210ENST00000589823 BCL11BQ9C0K0 894 aaPredicted RBP17.82■□□□□ 0.44
VMP1-210ENST00000589823 MRC1P22897 1456 aa17.82■□□□□ 0.44
VMP1-210ENST00000589823 NHSQ6T4R5 1651 aa17.81■□□□□ 0.44
VMP1-210ENST00000589823 ILDR2Q71H61 639 aa17.81■□□□□ 0.44
VMP1-210ENST00000589823 PIGBQ92521 554 aa17.81■□□□□ 0.44
VMP1-210ENST00000589823 KAT6BQ8WYB5 2073 aa17.8■□□□□ 0.44
VMP1-210ENST00000589823 TAF7Q15545 349 aaPredicted RBP17.8■□□□□ 0.44
VMP1-210ENST00000589823 VIRMAQ69YN4 1812 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms