RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 SYTL4Q96C24 671 aaPredicted RBP19.59■□□□□ 0.73
VMP1-209ENST00000588915 QSER1Q2KHR3 1735 aa19.59■□□□□ 0.73
VMP1-209ENST00000588915 POLD1P28340 1107 aa19.58■□□□□ 0.72
VMP1-209ENST00000588915 KIF24Q5T7B8 1368 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 PNPLA7Q6ZV29 1317 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 NBPF6Q5VWK0 638 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 ZNF784Q8NCA9 323 aaPredicted RBP19.57■□□□□ 0.72
VMP1-209ENST00000588915 NBPF4Q96M43 638 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 TFCP2L1Q9NZI6 479 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 UTRNP46939 3433 aa19.57■□□□□ 0.72
VMP1-209ENST00000588915 RRS1Q15050 365 aaKnown RBP19.56■□□□□ 0.72
VMP1-209ENST00000588915 RAPGEF4Q8WZA2 1011 aa19.56■□□□□ 0.72
VMP1-209ENST00000588915 SMG6Q86US8 1419 aaKnown RBP19.56■□□□□ 0.72
VMP1-209ENST00000588915 NSD2O96028 1365 aa19.56■□□□□ 0.72
VMP1-209ENST00000588915 GGNBP2Q9H3C7 697 aa19.55■□□□□ 0.72
VMP1-209ENST00000588915 MEGF6O75095 1541 aa19.55■□□□□ 0.72
VMP1-209ENST00000588915 USP47Q96K76 1375 aa19.55■□□□□ 0.72
VMP1-209ENST00000588915 LY75O60449 1722 aa19.54■□□□□ 0.72
VMP1-209ENST00000588915 INSRP06213 1382 aa19.54■□□□□ 0.72
VMP1-209ENST00000588915 COL24A1Q17RW2 1714 aa19.54■□□□□ 0.72
VMP1-209ENST00000588915 CHD4Q14839 1912 aa19.53■□□□□ 0.72
VMP1-209ENST00000588915 TATP17735 454 aaPredicted RBP19.53■□□□□ 0.72
VMP1-209ENST00000588915 CCNL1Q9UK58 526 aaPredicted RBP19.53■□□□□ 0.72
VMP1-209ENST00000588915 RGPD2P0DJD1 1756 aa19.52■□□□□ 0.72
VMP1-209ENST00000588915 DOT1LQ8TEK3 1739 aa19.52■□□□□ 0.72
VMP1-209ENST00000588915 SHANK3Q9BYB0 1731 aa19.52■□□□□ 0.72
VMP1-209ENST00000588915 GPR162Q16538 588 aa19.51■□□□□ 0.71
VMP1-209ENST00000588915 FLT4P35916 1363 aa19.51■□□□□ 0.71
VMP1-209ENST00000588915 KCNQ4P56696 695 aa19.5■□□□□ 0.71
VMP1-209ENST00000588915 HSP90AB2PQ58FF8 381 aa19.5■□□□□ 0.71
VMP1-209ENST00000588915 PCDH11XQ9BZA7 1347 aa19.5■□□□□ 0.71
VMP1-209ENST00000588915 PCDH11YQ9BZA8 1340 aa19.5■□□□□ 0.71
VMP1-209ENST00000588915 USHBP1Q8N6Y0 703 aa19.48■□□□□ 0.71
VMP1-209ENST00000588915 FLAD1Q8NFF5 587 aa19.48■□□□□ 0.71
VMP1-209ENST00000588915 TIMELESSQ9UNS1 1208 aa19.48■□□□□ 0.71
VMP1-209ENST00000588915 TRIM26Q12899 539 aaPredicted RBP19.47■□□□□ 0.71
VMP1-209ENST00000588915 COL23A1Q86Y22 540 aaPredicted RBP19.46■□□□□ 0.71
VMP1-209ENST00000588915 KLHL34Q8N239 644 aa19.45■□□□□ 0.7
VMP1-209ENST00000588915 SMARCC1Q92922 1105 aaPredicted RBP19.45■□□□□ 0.7
VMP1-209ENST00000588915 CARD14Q9BXL6 1004 aa19.45■□□□□ 0.7
VMP1-209ENST00000588915 TUBGCP6Q96RT7 1819 aa19.45■□□□□ 0.7
VMP1-209ENST00000588915 CYP27B1O15528 508 aa19.44■□□□□ 0.7
VMP1-209ENST00000588915 GRIN3BO60391 1043 aa19.44■□□□□ 0.7
VMP1-209ENST00000588915 KIF20BQ96Q89 1820 aa19.44■□□□□ 0.7
VMP1-209ENST00000588915 MSH5O43196 834 aa19.43■□□□□ 0.7
VMP1-209ENST00000588915 NKX1-1Q15270 411 aaPredicted RBP19.43■□□□□ 0.7
VMP1-209ENST00000588915 PALLDQ8WX93 1383 aa19.43■□□□□ 0.7
VMP1-209ENST00000588915 MPRIPQ6WCQ1 1025 aa19.42■□□□□ 0.7
VMP1-209ENST00000588915 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.42■□□□□ 0.7
VMP1-209ENST00000588915 EMILIN1Q9Y6C2 1016 aa19.42■□□□□ 0.7
VMP1-209ENST00000588915 WASHC2AQ641Q2 1341 aa19.42■□□□□ 0.7
VMP1-209ENST00000588915 NCAPD2Q15021 1401 aa19.42■□□□□ 0.7
VMP1-209ENST00000588915 C1QTNF8P60827 252 aa19.41■□□□□ 0.7
VMP1-209ENST00000588915 NLGN2Q8NFZ4 835 aa19.41■□□□□ 0.7
VMP1-209ENST00000588915 SPG7Q9UQ90 795 aa19.41■□□□□ 0.7
VMP1-209ENST00000588915 NSD3Q9BZ95 1437 aa19.41■□□□□ 0.7
VMP1-209ENST00000588915 CD2APQ9Y5K6 639 aa19.4■□□□□ 0.7
VMP1-209ENST00000588915 PELP1Q8IZL8 1130 aaKnown RBP19.39■□□□□ 0.69
VMP1-209ENST00000588915 C5P01031 1676 aa19.38■□□□□ 0.69
VMP1-209ENST00000588915 CLSPNQ9HAW4 1339 aa19.38■□□□□ 0.69
VMP1-209ENST00000588915 PLEKHG2Q9H7P9 1386 aa19.37■□□□□ 0.69
VMP1-209ENST00000588915 PIGBQ92521 554 aa19.37■□□□□ 0.69
VMP1-209ENST00000588915 PKD1L3Q7Z443 1732 aa19.37■□□□□ 0.69
VMP1-209ENST00000588915 PPM1GO15355 546 aaPredicted RBP19.36■□□□□ 0.69
VMP1-209ENST00000588915 EYA1Q99502 592 aa19.36■□□□□ 0.69
VMP1-209ENST00000588915 GOLGB1Q14789 3259 aaKnown RBP19.35■□□□□ 0.69
VMP1-209ENST00000588915 TAF1LQ8IZX4 1826 aa19.35■□□□□ 0.69
VMP1-209ENST00000588915 YBX3P16989 372 aaKnown RBP eCLIP19.35■□□□□ 0.69
VMP1-209ENST00000588915 MSL1Q68DK7 614 aa19.35■□□□□ 0.69
VMP1-209ENST00000588915 AK7Q96M32 723 aa19.35■□□□□ 0.69
VMP1-209ENST00000588915 POLKQ9UBT6 870 aa19.35■□□□□ 0.69
VMP1-209ENST00000588915 IFNL2Q8IZJ0 200 aa19.34■□□□□ 0.69
VMP1-209ENST00000588915 ITGB4P16144 1822 aa19.34■□□□□ 0.69
VMP1-209ENST00000588915 ANKRD26Q9UPS8 1709 aa19.34■□□□□ 0.69
VMP1-209ENST00000588915 GIGYF1O75420 1035 aaPredicted RBP19.33■□□□□ 0.68
VMP1-209ENST00000588915 SSFA2P28290 1259 aa19.33■□□□□ 0.68
VMP1-209ENST00000588915 C4BP0C0L5 1744 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 TOGARAM1Q9Y4F4 1720 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 SENP3-EIF4A1A0A087X0R7 540 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 LOC102724428A0A0B4J2F2 783 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 SIK1P57059 783 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 TMOD3Q9NYL9 352 aa19.32■□□□□ 0.68
VMP1-209ENST00000588915 MAP2P11137 1827 aaKnown RBP19.31■□□□□ 0.68
VMP1-209ENST00000588915 PHKG2P15735 406 aa19.31■□□□□ 0.68
VMP1-209ENST00000588915 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.3■□□□□ 0.68
VMP1-209ENST00000588915 LINC00116Q8NCU8 138 aa19.28■□□□□ 0.68
VMP1-209ENST00000588915 UBR3Q6ZT12 1888 aa19.27■□□□□ 0.68
VMP1-209ENST00000588915 HSP90AB1P08238 724 aaKnown RBP19.27■□□□□ 0.68
VMP1-209ENST00000588915 ATP6V1AP38606 617 aa19.27■□□□□ 0.68
VMP1-209ENST00000588915 EIF4A2Q14240 407 aaKnown RBP19.27■□□□□ 0.68
VMP1-209ENST00000588915 AMIGO3Q86WK7 504 aa19.27■□□□□ 0.68
VMP1-209ENST00000588915 ASAP1Q9ULH1 1129 aa19.27■□□□□ 0.68
VMP1-209ENST00000588915 ERVV-2B6SEH9 535 aa19.26■□□□□ 0.67
VMP1-209ENST00000588915 PHF14O94880 888 aa19.26■□□□□ 0.67
VMP1-209ENST00000588915 ITPK1Q13572 414 aa19.25■□□□□ 0.67
VMP1-209ENST00000588915 ATG3Q9NT62 314 aa19.25■□□□□ 0.67
VMP1-209ENST00000588915 IGSF1Q8N6C5 1336 aa19.25■□□□□ 0.67
VMP1-209ENST00000588915 EIF4G2P78344 907 aaKnown RBP eCLIP19.24■□□□□ 0.67
VMP1-209ENST00000588915 GNPATO15228 680 aa19.23■□□□□ 0.67
VMP1-209ENST00000588915 PLEKHO1Q53GL0 409 aaPredicted RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms