RNA–Protein interactions for RNA: ENST00000588907.2

SCAMP4-211, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 4

Gene SCAMP4, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-211ENST00000588907 NGEFQ8N5V2 710 aa22.44■■□□□ 1.18
SCAMP4-211ENST00000588907 PLEKHF1Q96S99 279 aa22.44■■□□□ 1.18
SCAMP4-211ENST00000588907 QTRT2Q9H974 415 aaKnown RBP22.44■■□□□ 1.18
SCAMP4-211ENST00000588907 MEGF6O75095 1541 aa22.43■■□□□ 1.18
SCAMP4-211ENST00000588907 PLEKHO1Q53GL0 409 aaPredicted RBP22.42■■□□□ 1.18
SCAMP4-211ENST00000588907 GAS2L2Q8NHY3 880 aa22.42■■□□□ 1.18
SCAMP4-211ENST00000588907 SPG7Q9UQ90 795 aa22.42■■□□□ 1.18
SCAMP4-211ENST00000588907 PKD1L3Q7Z443 1732 aa22.42■■□□□ 1.18
SCAMP4-211ENST00000588907 NCBP3Q53F19 620 aaKnown RBP22.41■■□□□ 1.18
SCAMP4-211ENST00000588907 GLI3P10071 1580 aa22.41■■□□□ 1.18
SCAMP4-211ENST00000588907 RBM6P78332 1123 aaKnown RBP22.39■■□□□ 1.17
SCAMP4-211ENST00000588907 CCDC146Q8IYE0 955 aa22.39■■□□□ 1.17
SCAMP4-211ENST00000588907 TNS2Q63HR2 1409 aa22.39■■□□□ 1.17
SCAMP4-211ENST00000588907 THSD7AQ9UPZ6 1657 aa22.38■■□□□ 1.17
SCAMP4-211ENST00000588907 PCDH11XQ9BZA7 1347 aa22.37■■□□□ 1.17
SCAMP4-211ENST00000588907 PCDH11YQ9BZA8 1340 aa22.37■■□□□ 1.17
SCAMP4-211ENST00000588907 ONECUT3O60422 494 aaPredicted RBP22.36■■□□□ 1.17
SCAMP4-211ENST00000588907 LMOD3Q0VAK6 560 aa22.36■■□□□ 1.17
SCAMP4-211ENST00000588907 NFE2L2Q16236 605 aa22.36■■□□□ 1.17
SCAMP4-211ENST00000588907 FAM98CQ17RN3 349 aaKnown RBP22.36■■□□□ 1.17
SCAMP4-211ENST00000588907 ZCRB1Q8TBF4 217 aaKnown RBP22.36■■□□□ 1.17
SCAMP4-211ENST00000588907 LRRC37A3O60309 1634 aa22.35■■□□□ 1.17
SCAMP4-211ENST00000588907 EXOC5O00471 708 aa22.35■■□□□ 1.17
SCAMP4-211ENST00000588907 C1orf141Q5JVX7 400 aa22.35■■□□□ 1.17
SCAMP4-211ENST00000588907 PHACTR3Q96KR7 559 aa22.35■■□□□ 1.17
SCAMP4-211ENST00000588907 APAF1O14727 1248 aa22.34■■□□□ 1.17
SCAMP4-211ENST00000588907 DDB1Q16531 1140 aa22.34■■□□□ 1.17
SCAMP4-211ENST00000588907 HTATSF1O43719 755 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 HSP90AB1P08238 724 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 RXRBP28702 533 aa22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 TMPOP42166 694 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 MTHFSDQ2M296 383 aaKnown RBP22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 ZNF530Q6P9A1 599 aaPredicted RBP22.33■■□□□ 1.17
SCAMP4-211ENST00000588907 AKAP4Q5JQC9 854 aa22.32■■□□□ 1.16
SCAMP4-211ENST00000588907 IFNL2Q8IZJ0 200 aa22.32■■□□□ 1.16
SCAMP4-211ENST00000588907 RGS17Q9UGC6 210 aaPredicted RBP22.32■■□□□ 1.16
SCAMP4-211ENST00000588907 MAP3K5Q99683 1374 aa22.32■■□□□ 1.16
SCAMP4-211ENST00000588907 A0A0G2JS52 829 aa22.31■■□□□ 1.16
SCAMP4-211ENST00000588907 MYT1Q01538 1121 aa22.31■■□□□ 1.16
SCAMP4-211ENST00000588907 CCDC27Q2M243 656 aa22.31■■□□□ 1.16
SCAMP4-211ENST00000588907 SHANK3Q9BYB0 1731 aa22.31■■□□□ 1.16
SCAMP4-211ENST00000588907 GNAT3A8MTJ3 354 aa22.3■■□□□ 1.16
SCAMP4-211ENST00000588907 RTF1Q92541 710 aaKnown RBP22.3■■□□□ 1.16
SCAMP4-211ENST00000588907 RIPK4P57078 832 aa22.29■■□□□ 1.16
SCAMP4-211ENST00000588907 DLG5Q8TDM6 1919 aa22.28■■□□□ 1.16
SCAMP4-211ENST00000588907 PHKG2P15735 406 aa22.28■■□□□ 1.16
SCAMP4-211ENST00000588907 HNRNPUQ00839 825 aaKnown RBP eCLIP22.28■■□□□ 1.16
SCAMP4-211ENST00000588907 CALD1Q05682 793 aaKnown RBP22.27■■□□□ 1.16
SCAMP4-211ENST00000588907 PDE3BQ13370 1112 aa22.27■■□□□ 1.16
SCAMP4-211ENST00000588907 SEPT12Q8IYM1 358 aa22.27■■□□□ 1.16
SCAMP4-211ENST00000588907 DCAF5Q96JK2 942 aa22.26■■□□□ 1.15
SCAMP4-211ENST00000588907 CYP27B1O15528 508 aa22.25■■□□□ 1.15
SCAMP4-211ENST00000588907 NKX1-1Q15270 411 aaPredicted RBP22.25■■□□□ 1.15
SCAMP4-211ENST00000588907 POTEAQ6S8J7 498 aa22.25■■□□□ 1.15
SCAMP4-211ENST00000588907 ADAMTS7Q9UKP4 1686 aa22.24■■□□□ 1.15
SCAMP4-211ENST00000588907 NEUROD2Q15784 382 aa22.24■■□□□ 1.15
SCAMP4-211ENST00000588907 DDX54Q8TDD1 881 aaKnown RBP22.24■■□□□ 1.15
SCAMP4-211ENST00000588907 RRP7AQ9Y3A4 280 aaKnown RBP22.24■■□□□ 1.15
SCAMP4-211ENST00000588907 ZBED9Q6R2W3 1325 aa22.23■■□□□ 1.15
SCAMP4-211ENST00000588907 BCL9O00512 1426 aa22.23■■□□□ 1.15
SCAMP4-211ENST00000588907 CEMIPQ8WUJ3 1361 aa22.22■■□□□ 1.15
SCAMP4-211ENST00000588907 SCN11AQ9UI33 1791 aa22.21■■□□□ 1.15
SCAMP4-211ENST00000588907 WWC1Q8IX03 1113 aa22.21■■□□□ 1.15
SCAMP4-211ENST00000588907 TRIM35Q9UPQ4 493 aa22.21■■□□□ 1.15
SCAMP4-211ENST00000588907 RGS12O14924 1447 aa22.21■■□□□ 1.15
SCAMP4-211ENST00000588907 KRT27Q7Z3Y8 459 aa22.2■■□□□ 1.14
SCAMP4-211ENST00000588907 WDR63Q8IWG1 891 aa22.2■■□□□ 1.14
SCAMP4-211ENST00000588907 ERVV-2B6SEH9 535 aa22.19■■□□□ 1.14
SCAMP4-211ENST00000588907 KDM6AO15550 1401 aaPredicted RBP22.19■■□□□ 1.14
SCAMP4-211ENST00000588907 MRC1P22897 1456 aa22.19■■□□□ 1.14
SCAMP4-211ENST00000588907 VIRMAQ69YN4 1812 aaKnown RBP22.19■■□□□ 1.14
SCAMP4-211ENST00000588907 IL16Q14005 1332 aa22.18■■□□□ 1.14
SCAMP4-211ENST00000588907 RNMTO43148 476 aaKnown RBP22.18■■□□□ 1.14
SCAMP4-211ENST00000588907 MARCH10Q8NA82 808 aaPredicted RBP22.18■■□□□ 1.14
SCAMP4-211ENST00000588907 BRWD3Q6RI45 1802 aa22.17■■□□□ 1.14
SCAMP4-211ENST00000588907 ZNF521Q96K83 1311 aa22.17■■□□□ 1.14
SCAMP4-211ENST00000588907 TEFQ10587 303 aa22.17■■□□□ 1.14
SCAMP4-211ENST00000588907 MPRIPQ6WCQ1 1025 aa22.17■■□□□ 1.14
SCAMP4-211ENST00000588907 IL17REQ8NFR9 667 aa22.16■■□□□ 1.14
SCAMP4-211ENST00000588907 BABAM1Q9NWV8 329 aa22.16■■□□□ 1.14
SCAMP4-211ENST00000588907 SALL2Q9Y467 1007 aaPredicted RBP22.16■■□□□ 1.14
SCAMP4-211ENST00000588907 MCM10Q7L590 875 aa22.15■■□□□ 1.14
SCAMP4-211ENST00000588907 FAM196AQ6ZSG2 479 aa22.14■■□□□ 1.13
SCAMP4-211ENST00000588907 YTHDC1Q96MU7 727 aaKnown RBP22.14■■□□□ 1.13
SCAMP4-211ENST00000588907 GOLGA2Q08379 1002 aa22.13■■□□□ 1.13
SCAMP4-211ENST00000588907 SLC52A2Q9HAB3 445 aa22.13■■□□□ 1.13
SCAMP4-211ENST00000588907 IFT57Q9NWB7 429 aa22.13■■□□□ 1.13
SCAMP4-211ENST00000588907 DOT1LQ8TEK3 1739 aa22.13■■□□□ 1.13
SCAMP4-211ENST00000588907 TOGARAM1Q9Y4F4 1720 aa22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 CABP4P57796 275 aa22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 GNAI1P63096 354 aa22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 DCTN1Q14203 1278 aa22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 LGR6Q9HBX8 967 aa22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 SIPA1L3O60292 1781 aaPredicted RBP22.12■■□□□ 1.13
SCAMP4-211ENST00000588907 E9PSI1 815 aa22.11■■□□□ 1.13
SCAMP4-211ENST00000588907 TAF7Q15545 349 aaPredicted RBP22.11■■□□□ 1.13
SCAMP4-211ENST00000588907 CFAP44Q96MT7 982 aa22.11■■□□□ 1.13
SCAMP4-211ENST00000588907 MYH16Q9H6N6 1097 aa22.11■■□□□ 1.13
SCAMP4-211ENST00000588907 TMOD3Q9NYL9 352 aa22.11■■□□□ 1.13
SCAMP4-211ENST00000588907 NHSQ6T4R5 1651 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms