RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 HDGFL2Q7Z4V5 671 aaPredicted RBP15.76■□□□□ 0.11
VPS4B-202ENST00000588059 IP6K1Q92551 441 aa15.76■□□□□ 0.11
VPS4B-202ENST00000588059 CEP350Q5VT06 3117 aa15.76■□□□□ 0.11
VPS4B-202ENST00000588059 TMC1Q8TDI8 760 aa15.75■□□□□ 0.11
VPS4B-202ENST00000588059 SYTL4Q96C24 671 aaPredicted RBP15.75■□□□□ 0.11
VPS4B-202ENST00000588059 SLC12A5Q9H2X9 1139 aa15.75■□□□□ 0.11
VPS4B-202ENST00000588059 MEGF6O75095 1541 aa15.74■□□□□ 0.11
VPS4B-202ENST00000588059 C5P01031 1676 aa15.74■□□□□ 0.11
VPS4B-202ENST00000588059 LTV1Q96GA3 475 aaPredicted RBP15.74■□□□□ 0.11
VPS4B-202ENST00000588059 GRIN3BO60391 1043 aa15.73■□□□□ 0.11
VPS4B-202ENST00000588059 CCNL1Q9UK58 526 aaPredicted RBP15.73■□□□□ 0.11
VPS4B-202ENST00000588059 ATP10DQ9P241 1426 aa15.73■□□□□ 0.11
VPS4B-202ENST00000588059 COL23A1Q86Y22 540 aaPredicted RBP15.72■□□□□ 0.11
VPS4B-202ENST00000588059 TERF2IPQ9NYB0 399 aa15.72■□□□□ 0.11
VPS4B-202ENST00000588059 TAF1LQ8IZX4 1826 aa15.72■□□□□ 0.11
VPS4B-202ENST00000588059 MAP3K19Q56UN5 1328 aa15.7■□□□□ 0.1
VPS4B-202ENST00000588059 HOXC9P31274 260 aa15.7■□□□□ 0.1
VPS4B-202ENST00000588059 NEUROD1Q13562 356 aa15.7■□□□□ 0.1
VPS4B-202ENST00000588059 MSL1Q68DK7 614 aa15.7■□□□□ 0.1
VPS4B-202ENST00000588059 ZCRB1Q8TBF4 217 aaKnown RBP15.7■□□□□ 0.1
VPS4B-202ENST00000588059 MSH5O43196 834 aa15.69■□□□□ 0.1
VPS4B-202ENST00000588059 CARD11Q9BXL7 1154 aa15.69■□□□□ 0.1
VPS4B-202ENST00000588059 ADCY9O60503 1353 aa15.69■□□□□ 0.1
VPS4B-202ENST00000588059 USP47Q96K76 1375 aa15.69■□□□□ 0.1
VPS4B-202ENST00000588059 TOGARAM1Q9Y4F4 1720 aa15.68■□□□□ 0.1
VPS4B-202ENST00000588059 RTL1A6NKG5 1358 aa15.66■□□□□ 0.1
VPS4B-202ENST00000588059 FBLN1P23142 703 aa15.66■□□□□ 0.1
VPS4B-202ENST00000588059 AMPHP49418 695 aa15.66■□□□□ 0.1
VPS4B-202ENST00000588059 COG3Q96JB2 828 aa15.66■□□□□ 0.1
VPS4B-202ENST00000588059 PUS7Q96PZ0 661 aaKnown RBP15.66■□□□□ 0.1
VPS4B-202ENST00000588059 CD2APQ9Y5K6 639 aa15.66■□□□□ 0.1
VPS4B-202ENST00000588059 GPBP1L1Q9HC44 474 aaPredicted RBP15.65■□□□□ 0.1
VPS4B-202ENST00000588059 C4BP0C0L5 1744 aa15.65■□□□□ 0.1
VPS4B-202ENST00000588059 UBR3Q6ZT12 1888 aa15.65■□□□□ 0.1
VPS4B-202ENST00000588059 ITGB4P16144 1822 aa15.64■□□□□ 0.09
VPS4B-202ENST00000588059 CGNL1Q0VF96 1302 aa15.64■□□□□ 0.09
VPS4B-202ENST00000588059 PALLDQ8WX93 1383 aa15.63■□□□□ 0.09
VPS4B-202ENST00000588059 NBPF6Q5VWK0 638 aa15.63■□□□□ 0.09
VPS4B-202ENST00000588059 USHBP1Q8N6Y0 703 aa15.63■□□□□ 0.09
VPS4B-202ENST00000588059 NBPF4Q96M43 638 aa15.63■□□□□ 0.09
VPS4B-202ENST00000588059 HSPA6P17066 643 aa15.62■□□□□ 0.09
VPS4B-202ENST00000588059 SMG6Q86US8 1419 aaKnown RBP15.61■□□□□ 0.09
VPS4B-202ENST00000588059 PKD1L3Q7Z443 1732 aa15.61■□□□□ 0.09
VPS4B-202ENST00000588059 RRS1Q15050 365 aaKnown RBP15.61■□□□□ 0.09
VPS4B-202ENST00000588059 FLAD1Q8NFF5 587 aa15.61■□□□□ 0.09
VPS4B-202ENST00000588059 ZNF526Q8TF50 670 aaPredicted RBP15.61■□□□□ 0.09
VPS4B-202ENST00000588059 RAPGEF4Q8WZA2 1011 aa15.61■□□□□ 0.09
VPS4B-202ENST00000588059 AMIGO3Q86WK7 504 aa15.6■□□□□ 0.09
VPS4B-202ENST00000588059 TESK2Q96S53 571 aa15.6■□□□□ 0.09
VPS4B-202ENST00000588059 PCDH11XQ9BZA7 1347 aa15.6■□□□□ 0.09
VPS4B-202ENST00000588059 PCDH11YQ9BZA8 1340 aa15.6■□□□□ 0.09
VPS4B-202ENST00000588059 MAP2P11137 1827 aaKnown RBP15.59■□□□□ 0.09
VPS4B-202ENST00000588059 CICQ96RK0 1608 aaPredicted RBP15.59■□□□□ 0.09
VPS4B-202ENST00000588059 IGSF1Q8N6C5 1336 aa15.59■□□□□ 0.09
VPS4B-202ENST00000588059 KIF20BQ96Q89 1820 aa15.59■□□□□ 0.09
VPS4B-202ENST00000588059 TATP17735 454 aaPredicted RBP15.58■□□□□ 0.08
VPS4B-202ENST00000588059 HMGB2P26583 209 aaKnown RBP15.57■□□□□ 0.08
VPS4B-202ENST00000588059 MPRIPQ6WCQ1 1025 aa15.57■□□□□ 0.08
VPS4B-202ENST00000588059 AK7Q96M32 723 aa15.57■□□□□ 0.08
VPS4B-202ENST00000588059 WWC3Q9ULE0 1092 aa15.57■□□□□ 0.08
VPS4B-202ENST00000588059 INSRP06213 1382 aa15.57■□□□□ 0.08
VPS4B-202ENST00000588059 CYP27B1O15528 508 aa15.56■□□□□ 0.08
VPS4B-202ENST00000588059 NSD3Q9BZ95 1437 aa15.56■□□□□ 0.08
VPS4B-202ENST00000588059 KIF13BQ9NQT8 1826 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 KIAA1551Q9HCM1 1747 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 FLT4P35916 1363 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 ST20-MTHFSA0A0A6YYL1 179 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.55■□□□□ 0.08
VPS4B-202ENST00000588059 FYB1O15117 783 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 PHF14O94880 888 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 HSP90AB2PQ58FF8 381 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 SMIM5Q71RC9 77 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 SMARCC1Q92922 1105 aaPredicted RBP15.55■□□□□ 0.08
VPS4B-202ENST00000588059 GGNBP2Q9H3C7 697 aa15.55■□□□□ 0.08
VPS4B-202ENST00000588059 KIF3CO14782 793 aa15.54■□□□□ 0.08
VPS4B-202ENST00000588059 NCAPD2Q15021 1401 aa15.53■□□□□ 0.08
VPS4B-202ENST00000588059 KIF24Q5T7B8 1368 aa15.53■□□□□ 0.08
VPS4B-202ENST00000588059 TONSLQ96HA7 1378 aa15.53■□□□□ 0.08
VPS4B-202ENST00000588059 SSFA2P28290 1259 aa15.53■□□□□ 0.08
VPS4B-202ENST00000588059 ANKRD26Q9UPS8 1709 aa15.52■□□□□ 0.08
VPS4B-202ENST00000588059 PIGBQ92521 554 aa15.52■□□□□ 0.08
VPS4B-202ENST00000588059 N4BP2Q86UW6 1770 aaPredicted RBP15.52■□□□□ 0.07
VPS4B-202ENST00000588059 LINC00116Q8NCU8 138 aa15.51■□□□□ 0.07
VPS4B-202ENST00000588059 PXDNLA1KZ92 1463 aa15.51■□□□□ 0.07
VPS4B-202ENST00000588059 LOC102724428A0A0B4J2F2 783 aa15.5■□□□□ 0.07
VPS4B-202ENST00000588059 SIK1P57059 783 aa15.5■□□□□ 0.07
VPS4B-202ENST00000588059 SLC24A1O60721 1099 aa15.49■□□□□ 0.07
VPS4B-202ENST00000588059 NKX1-1Q15270 411 aaPredicted RBP15.49■□□□□ 0.07
VPS4B-202ENST00000588059 BRCA1P38398 1863 aaKnown RBP15.48■□□□□ 0.07
VPS4B-202ENST00000588059 ITPK1Q13572 414 aa15.48■□□□□ 0.07
VPS4B-202ENST00000588059 GNPATO15228 680 aa15.47■□□□□ 0.07
VPS4B-202ENST00000588059 APLP1P51693 650 aa15.47■□□□□ 0.07
VPS4B-202ENST00000588059 EMILIN1Q9Y6C2 1016 aa15.47■□□□□ 0.07
VPS4B-202ENST00000588059 WDR90Q96KV7 1748 aa15.46■□□□□ 0.07
VPS4B-202ENST00000588059 C10orf71Q711Q0 1435 aa15.46■□□□□ 0.07
VPS4B-202ENST00000588059 MMP10P09238 476 aa15.46■□□□□ 0.07
VPS4B-202ENST00000588059 ASAP1Q9ULH1 1129 aa15.46■□□□□ 0.07
VPS4B-202ENST00000588059 ZNF831Q5JPB2 1677 aa15.45■□□□□ 0.06
VPS4B-202ENST00000588059 TMOD3Q9NYL9 352 aa15.45■□□□□ 0.06
VPS4B-202ENST00000588059 SPG7Q9UQ90 795 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms