RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 SSH1Q8WYL5 1049 aa25.54■■□□□ 1.68
TRIM47-204ENST00000587339 KIAA0232Q92628 1395 aa25.54■■□□□ 1.68
TRIM47-204ENST00000587339 CHL1O00533 1208 aa25.53■■□□□ 1.68
TRIM47-204ENST00000587339 MAP3K5Q99683 1374 aa25.53■■□□□ 1.68
TRIM47-204ENST00000587339 CRB1P82279 1406 aa25.53■■□□□ 1.68
TRIM47-204ENST00000587339 RGPD5Q99666 1765 aa25.53■■□□□ 1.68
TRIM47-204ENST00000587339 ABCC6O95255 1503 aa25.52■■□□□ 1.68
TRIM47-204ENST00000587339 CHRNA2Q15822 529 aa25.52■■□□□ 1.68
TRIM47-204ENST00000587339 ALDH1L2Q3SY69 923 aa25.52■■□□□ 1.68
TRIM47-204ENST00000587339 CAMTA1Q9Y6Y1 1673 aa25.51■■□□□ 1.67
TRIM47-204ENST00000587339 VAMP4O75379 141 aa25.51■■□□□ 1.67
TRIM47-204ENST00000587339 TSPYL6Q8N831 410 aa25.51■■□□□ 1.67
TRIM47-204ENST00000587339 COL18A1P39060 1754 aa25.51■■□□□ 1.67
TRIM47-204ENST00000587339 HAP1P54257 671 aaPredicted RBP25.5■■□□□ 1.67
TRIM47-204ENST00000587339 TWISTNBQ3B726 338 aaPredicted RBP25.5■■□□□ 1.67
TRIM47-204ENST00000587339 ZKSCAN2Q63HK3 967 aa25.49■■□□□ 1.67
TRIM47-204ENST00000587339 PANK1Q8TE04 598 aa25.49■■□□□ 1.67
TRIM47-204ENST00000587339 ELL2O00472 640 aaPredicted RBP25.49■■□□□ 1.67
TRIM47-204ENST00000587339 AMOTQ4VCS5 1084 aa25.49■■□□□ 1.67
TRIM47-204ENST00000587339 PLEKHO1Q53GL0 409 aaPredicted RBP25.49■■□□□ 1.67
TRIM47-204ENST00000587339 C8orf58Q8NAV2 365 aa25.48■■□□□ 1.67
TRIM47-204ENST00000587339 NLRP2Q9NX02 1062 aa25.48■■□□□ 1.67
TRIM47-204ENST00000587339 CSB-PGBD3P0DP91 1061 aa25.47■■□□□ 1.67
TRIM47-204ENST00000587339 KIF16BQ96L93 1317 aa25.47■■□□□ 1.67
TRIM47-204ENST00000587339 PRDM11Q9NQV5 511 aa25.47■■□□□ 1.67
TRIM47-204ENST00000587339 LMO7Q8WWI1 1683 aa25.46■■□□□ 1.67
TRIM47-204ENST00000587339 IL17REQ8NFR9 667 aa25.46■■□□□ 1.67
TRIM47-204ENST00000587339 COG6Q9Y2V7 657 aa25.45■■□□□ 1.67
TRIM47-204ENST00000587339 LRRC37A3O60309 1634 aa25.45■■□□□ 1.66
TRIM47-204ENST00000587339 MS4A1P11836 297 aa25.45■■□□□ 1.66
TRIM47-204ENST00000587339 CLUAP1Q96AJ1 413 aa25.45■■□□□ 1.66
TRIM47-204ENST00000587339 TSPYL4Q9UJ04 414 aa25.45■■□□□ 1.66
TRIM47-204ENST00000587339 ROBO1Q9Y6N7 1651 aa25.45■■□□□ 1.66
TRIM47-204ENST00000587339 BRPF1P55201 1214 aaPredicted RBP25.44■■□□□ 1.66
TRIM47-204ENST00000587339 ZNF530Q6P9A1 599 aaPredicted RBP25.44■■□□□ 1.66
TRIM47-204ENST00000587339 MIS18AQ9NYP9 233 aa25.44■■□□□ 1.66
TRIM47-204ENST00000587339 NOB1Q9ULX3 412 aaKnown RBP25.44■■□□□ 1.66
TRIM47-204ENST00000587339 AKAP4Q5JQC9 854 aa25.43■■□□□ 1.66
TRIM47-204ENST00000587339 TNNQ9UQP3 1299 aa25.43■■□□□ 1.66
TRIM47-204ENST00000587339 IPO8O15397 1037 aaKnown RBP25.43■■□□□ 1.66
TRIM47-204ENST00000587339 RLBP1P12271 317 aa25.43■■□□□ 1.66
TRIM47-204ENST00000587339 ATF7IPQ6VMQ6 1270 aa25.43■■□□□ 1.66
TRIM47-204ENST00000587339 FTSJ3Q8IY81 847 aaKnown RBP25.43■■□□□ 1.66
TRIM47-204ENST00000587339 RAPGEF4Q8WZA2 1011 aa25.43■■□□□ 1.66
TRIM47-204ENST00000587339 DZIP1LQ8IYY4 767 aaKnown RBP25.42■■□□□ 1.66
TRIM47-204ENST00000587339 FAM208AQ9UK61 1670 aaKnown RBP25.42■■□□□ 1.66
TRIM47-204ENST00000587339 TRIM27P14373 513 aa25.41■■□□□ 1.66
TRIM47-204ENST00000587339 ABCA3Q99758 1704 aa25.41■■□□□ 1.66
TRIM47-204ENST00000587339 C1orf141Q5JVX7 400 aa25.41■■□□□ 1.66
TRIM47-204ENST00000587339 CEMIPQ8WUJ3 1361 aa25.4■■□□□ 1.66
TRIM47-204ENST00000587339 KRT24Q2M2I5 525 aa25.4■■□□□ 1.66
TRIM47-204ENST00000587339 TAF7Q15545 349 aaPredicted RBP25.39■■□□□ 1.66
TRIM47-204ENST00000587339 MRPL50Q8N5N7 158 aaKnown RBP25.39■■□□□ 1.65
TRIM47-204ENST00000587339 BABAM1Q9NWV8 329 aa25.39■■□□□ 1.65
TRIM47-204ENST00000587339 AHDC1Q5TGY3 1603 aaPredicted RBP25.38■■□□□ 1.65
TRIM47-204ENST00000587339 TATP17735 454 aaPredicted RBP25.37■■□□□ 1.65
TRIM47-204ENST00000587339 LGR6Q9HBX8 967 aa25.37■■□□□ 1.65
TRIM47-204ENST00000587339 TCERG1O14776 1098 aaKnown RBP25.36■■□□□ 1.65
TRIM47-204ENST00000587339 AAMPQ13685 434 aa25.36■■□□□ 1.65
TRIM47-204ENST00000587339 MVPQ14764 893 aaKnown RBP25.36■■□□□ 1.65
TRIM47-204ENST00000587339 WDR17Q8IZU2 1322 aa25.35■■□□□ 1.65
TRIM47-204ENST00000587339 MPRIPQ6WCQ1 1025 aa25.35■■□□□ 1.65
TRIM47-204ENST00000587339 ARHGAP45Q92619 1136 aa25.35■■□□□ 1.65
TRIM47-204ENST00000587339 MEGF6O75095 1541 aa25.33■■□□□ 1.65
TRIM47-204ENST00000587339 COL5A2P05997 1499 aaPredicted RBP25.33■■□□□ 1.65
TRIM47-204ENST00000587339 TEFQ10587 303 aa25.33■■□□□ 1.65
TRIM47-204ENST00000587339 PLEKHG2Q9H7P9 1386 aa25.33■■□□□ 1.65
TRIM47-204ENST00000587339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.33■■□□□ 1.65
TRIM47-204ENST00000587339 SPG7Q9UQ90 795 aa25.33■■□□□ 1.65
TRIM47-204ENST00000587339 RNMTO43148 476 aaKnown RBP25.32■■□□□ 1.64
TRIM47-204ENST00000587339 TOM1L2Q6ZVM7 507 aa25.32■■□□□ 1.64
TRIM47-204ENST00000587339 OVOS2A0A0G2JMS6 1433 aa25.31■■□□□ 1.64
TRIM47-204ENST00000587339 TOM1O60784 492 aa25.31■■□□□ 1.64
TRIM47-204ENST00000587339 ITPRIPQ8IWB1 547 aa25.3■■□□□ 1.64
TRIM47-204ENST00000587339 DDX19BQ9UMR2 479 aa25.3■■□□□ 1.64
TRIM47-204ENST00000587339 KDM2BQ8NHM5 1336 aa25.3■■□□□ 1.64
TRIM47-204ENST00000587339 CENPQQ7L2Z9 268 aaPredicted RBP25.29■■□□□ 1.64
TRIM47-204ENST00000587339 TMEM57Q8N5G2 664 aa25.29■■□□□ 1.64
TRIM47-204ENST00000587339 EVA1CP58658 441 aa25.28■■□□□ 1.64
TRIM47-204ENST00000587339 SOS1Q07889 1333 aaPredicted RBP25.28■■□□□ 1.64
TRIM47-204ENST00000587339 STRN4Q9NRL3 753 aa25.27■■□□□ 1.64
TRIM47-204ENST00000587339 BTBD11A6QL63 1104 aa25.26■■□□□ 1.63
TRIM47-204ENST00000587339 PHKG2P15735 406 aa25.26■■□□□ 1.63
TRIM47-204ENST00000587339 API5Q9BZZ5 524 aaKnown RBP25.26■■□□□ 1.63
TRIM47-204ENST00000587339 COL22A1Q8NFW1 1626 aaPredicted RBP25.26■■□□□ 1.63
TRIM47-204ENST00000587339 PIP4K2BP78356 416 aa25.25■■□□□ 1.63
TRIM47-204ENST00000587339 IFNL2Q8IZJ0 200 aa25.25■■□□□ 1.63
TRIM47-204ENST00000587339 CARD10Q9BWT7 1032 aa25.25■■□□□ 1.63
TRIM47-204ENST00000587339 TSHZ2Q9NRE2 1034 aa25.25■■□□□ 1.63
TRIM47-204ENST00000587339 SLC4A2P04920 1241 aa25.24■■□□□ 1.63
TRIM47-204ENST00000587339 LARP1Q6PKG0 1096 aaKnown RBP25.24■■□□□ 1.63
TRIM47-204ENST00000587339 ABCC4O15439 1325 aa25.23■■□□□ 1.63
TRIM47-204ENST00000587339 PHLPP1O60346 1717 aa25.23■■□□□ 1.63
TRIM47-204ENST00000587339 ADAMTS7Q9UKP4 1686 aa25.23■■□□□ 1.63
TRIM47-204ENST00000587339 CCDC30Q5VVM6 783 aa25.23■■□□□ 1.63
TRIM47-204ENST00000587339 PKD1L3Q7Z443 1732 aa25.23■■□□□ 1.63
TRIM47-204ENST00000587339 STK31Q9BXU1 1019 aa25.22■■□□□ 1.63
TRIM47-204ENST00000587339 BTG4Q9NY30 223 aa25.22■■□□□ 1.63
TRIM47-204ENST00000587339 KDM3BQ7LBC6 1761 aa25.22■■□□□ 1.63
TRIM47-204ENST00000587339 EIF4A1P60842 406 aaKnown RBP25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms