RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 PLSCR1O15162 318 aa38.62■■■■□ 3.77
LIG3-208ENST00000586407 DOT1LQ8TEK3 1739 aa38.6■■■■□ 3.77
LIG3-208ENST00000586407 ZCRB1Q8TBF4 217 aaKnown RBP38.59■■■■□ 3.77
LIG3-208ENST00000586407 WASHC2AQ641Q2 1341 aa38.59■■■■□ 3.77
LIG3-208ENST00000586407 PROM2Q8N271 834 aa38.58■■■■□ 3.77
LIG3-208ENST00000586407 RAPGEF4Q8WZA2 1011 aa38.57■■■■□ 3.76
LIG3-208ENST00000586407 NSD2O96028 1365 aa38.57■■■■□ 3.76
LIG3-208ENST00000586407 KNSTRNQ9Y448 316 aa38.56■■■■□ 3.76
LIG3-208ENST00000586407 LRP5O75197 1615 aa38.55■■■■□ 3.76
LIG3-208ENST00000586407 TATP17735 454 aaPredicted RBP38.54■■■■□ 3.76
LIG3-208ENST00000586407 NBPF14Q5TI25 921 aa38.54■■■■□ 3.76
LIG3-208ENST00000586407 MORC1Q86VD1 984 aa38.53■■■■□ 3.76
LIG3-208ENST00000586407 ANO8Q9HCE9 1232 aaPredicted RBP38.53■■■■□ 3.76
LIG3-208ENST00000586407 TXNRD1Q16881 649 aa38.51■■■■□ 3.76
LIG3-208ENST00000586407 NCAPD2Q15021 1401 aa38.49■■■■□ 3.75
LIG3-208ENST00000586407 EYA1Q99502 592 aa38.49■■■■□ 3.75
LIG3-208ENST00000586407 EIF4A2Q14240 407 aaKnown RBP38.48■■■■□ 3.75
LIG3-208ENST00000586407 SRCAPQ6ZRS2 3230 aa38.48■■■■□ 3.75
LIG3-208ENST00000586407 PKD1L3Q7Z443 1732 aa38.47■■■■□ 3.75
LIG3-208ENST00000586407 AMER1Q5JTC6 1135 aaPredicted RBP38.47■■■■□ 3.75
LIG3-208ENST00000586407 SYTL4Q96C24 671 aaPredicted RBP38.47■■■■□ 3.75
LIG3-208ENST00000586407 PRIM1P49642 420 aaKnown RBP38.45■■■■□ 3.75
LIG3-208ENST00000586407 PCDH11XQ9BZA7 1347 aa38.4■■■■□ 3.74
LIG3-208ENST00000586407 PCDH11YQ9BZA8 1340 aa38.4■■■■□ 3.74
LIG3-208ENST00000586407 TOGARAM1Q9Y4F4 1720 aa38.39■■■■□ 3.74
LIG3-208ENST00000586407 CYP27B1O15528 508 aa38.39■■■■□ 3.74
LIG3-208ENST00000586407 PER1O15534 1290 aaPredicted RBP38.39■■■■□ 3.74
LIG3-208ENST00000586407 CNGB1Q14028 1251 aaPredicted RBP38.36■■■■□ 3.73
LIG3-208ENST00000586407 CC2D1BQ5T0F9 858 aaKnown RBP38.36■■■■□ 3.73
LIG3-208ENST00000586407 PAPPAQ13219 1627 aa38.36■■■■□ 3.73
LIG3-208ENST00000586407 CASZ1Q86V15 1759 aa38.36■■■■□ 3.73
LIG3-208ENST00000586407 PDGFDQ9GZP0 370 aaPredicted RBP38.34■■■■□ 3.73
LIG3-208ENST00000586407 LRRC4BQ9NT99 713 aa38.33■■■■□ 3.73
LIG3-208ENST00000586407 ITGB4P16144 1822 aa38.33■■■■□ 3.73
LIG3-208ENST00000586407 LY75O60449 1722 aa38.32■■■■□ 3.73
LIG3-208ENST00000586407 STK32BQ9NY57 414 aa38.32■■■■□ 3.72
LIG3-208ENST00000586407 IGSF1Q8N6C5 1336 aa38.32■■■■□ 3.72
LIG3-208ENST00000586407 KCNQ4P56696 695 aa38.31■■■■□ 3.72
LIG3-208ENST00000586407 SLC15A2Q16348 729 aa38.28■■■■□ 3.72
LIG3-208ENST00000586407 SPG7Q9UQ90 795 aa38.28■■■■□ 3.72
LIG3-208ENST00000586407 AEBP1Q8IUX7 1158 aa38.25■■■■□ 3.71
LIG3-208ENST00000586407 ZNF827Q17R98 1081 aa38.24■■■■□ 3.71
LIG3-208ENST00000586407 MTHFSP49914 203 aa38.23■■■■□ 3.71
LIG3-208ENST00000586407 MPRIPQ6WCQ1 1025 aa38.23■■■■□ 3.71
LIG3-208ENST00000586407 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP38.2■■■■□ 3.71
LIG3-208ENST00000586407 TUBGCP6Q96RT7 1819 aa38.19■■■■□ 3.7
LIG3-208ENST00000586407 ZBTB7AO95365 584 aa38.19■■■■□ 3.7
LIG3-208ENST00000586407 IL13P35225 146 aa38.19■■■■□ 3.7
LIG3-208ENST00000586407 PHKG2P15735 406 aa38.18■■■■□ 3.7
LIG3-208ENST00000586407 NKX1-1Q15270 411 aaPredicted RBP38.18■■■■□ 3.7
LIG3-208ENST00000586407 SLC27A3Q5K4L6 730 aa38.18■■■■□ 3.7
LIG3-208ENST00000586407 SPON1Q9HCB6 807 aa38.18■■■■□ 3.7
LIG3-208ENST00000586407 CCNL1Q9UK58 526 aaPredicted RBP38.16■■■■□ 3.7
LIG3-208ENST00000586407 NPC1L1Q9UHC9 1359 aa38.16■■■■□ 3.7
LIG3-208ENST00000586407 SULT6B1Q6IMI4 303 aa38.15■■■■□ 3.7
LIG3-208ENST00000586407 IFNL2Q8IZJ0 200 aa38.15■■■■□ 3.7
LIG3-208ENST00000586407 PIGBQ92521 554 aa38.13■■■■□ 3.69
LIG3-208ENST00000586407 AKT1S1Q96B36 256 aa38.13■■■■□ 3.69
LIG3-208ENST00000586407 PALLDQ8WX93 1383 aa38.13■■■■□ 3.69
LIG3-208ENST00000586407 ATF5Q9Y2D1 282 aaPredicted RBP38.12■■■■□ 3.69
LIG3-208ENST00000586407 C5P01031 1676 aa38.11■■■■□ 3.69
LIG3-208ENST00000586407 QSER1Q2KHR3 1735 aa38.09■■■■□ 3.69
LIG3-208ENST00000586407 PLEKHO1Q53GL0 409 aaPredicted RBP38.09■■■■□ 3.69
LIG3-208ENST00000586407 ZNF530Q6P9A1 599 aaPredicted RBP38.09■■■■□ 3.69
LIG3-208ENST00000586407 TAF1LQ8IZX4 1826 aa38.09■■■■□ 3.69
LIG3-208ENST00000586407 KDRP35968 1356 aa38.08■■■■□ 3.69
LIG3-208ENST00000586407 PLEKHG2Q9H7P9 1386 aa38.07■■■■□ 3.69
LIG3-208ENST00000586407 PPP1R1BQ9UD71 204 aaPredicted RBP38.07■■■■□ 3.68
LIG3-208ENST00000586407 COL3A1P02461 1466 aaPredicted RBP38.06■■■■□ 3.68
LIG3-208ENST00000586407 HMOX1P09601 288 aa38.05■■■■□ 3.68
LIG3-208ENST00000586407 TMOD3Q9NYL9 352 aa38.05■■■■□ 3.68
LIG3-208ENST00000586407 PNPLA7Q6ZV29 1317 aa38.03■■■■□ 3.68
LIG3-208ENST00000586407 KDM6AO15550 1401 aaPredicted RBP38.03■■■■□ 3.68
LIG3-208ENST00000586407 DIAPH1O60610 1272 aaKnown RBP38.02■■■■□ 3.68
LIG3-208ENST00000586407 PTGER2P43116 358 aa38.02■■■■□ 3.68
LIG3-208ENST00000586407 AMOTQ4VCS5 1084 aa38.02■■■■□ 3.68
LIG3-208ENST00000586407 TFCP2L1Q9NZI6 479 aa38.02■■■■□ 3.68
LIG3-208ENST00000586407 SMARCC1Q92922 1105 aaPredicted RBP38■■■■□ 3.67
LIG3-208ENST00000586407 MTFR1LQ9H019 292 aa38■■■■□ 3.67
LIG3-208ENST00000586407 ASAP1Q9ULH1 1129 aa38■■■■□ 3.67
LIG3-208ENST00000586407 DCAF5Q96JK2 942 aa37.96■■■■□ 3.67
LIG3-208ENST00000586407 C4BP0C0L5 1744 aa37.95■■■■□ 3.67
LIG3-208ENST00000586407 C1orf141Q5JVX7 400 aa37.95■■■■□ 3.67
LIG3-208ENST00000586407 SCN11AQ9UI33 1791 aa37.94■■■■□ 3.66
LIG3-208ENST00000586407 HSP90AB1P08238 724 aaKnown RBP37.94■■■■□ 3.66
LIG3-208ENST00000586407 ATG3Q9NT62 314 aa37.94■■■■□ 3.66
LIG3-208ENST00000586407 VIRMAQ69YN4 1812 aaKnown RBP37.94■■■■□ 3.66
LIG3-208ENST00000586407 U2SURPO15042 1029 aaKnown RBP37.92■■■■□ 3.66
LIG3-208ENST00000586407 SGIP1Q9BQI5 828 aa37.92■■■■□ 3.66
LIG3-208ENST00000586407 LOC102724428A0A0B4J2F2 783 aa37.91■■■■□ 3.66
LIG3-208ENST00000586407 ERVV-2B6SEH9 535 aa37.91■■■■□ 3.66
LIG3-208ENST00000586407 SIK1P57059 783 aa37.91■■■■□ 3.66
LIG3-208ENST00000586407 CABP4P57796 275 aa37.89■■■■□ 3.66
LIG3-208ENST00000586407 PPP2R1AP30153 589 aa37.88■■■■□ 3.65
LIG3-208ENST00000586407 COL23A1Q86Y22 540 aaPredicted RBP37.88■■■■□ 3.65
LIG3-208ENST00000586407 MSH5O43196 834 aa37.87■■■■□ 3.65
LIG3-208ENST00000586407 ITPK1Q13572 414 aa37.87■■■■□ 3.65
LIG3-208ENST00000586407 SMIM5Q71RC9 77 aa37.87■■■■□ 3.65
LIG3-208ENST00000586407 LINC00116Q8NCU8 138 aa37.87■■■■□ 3.65
LIG3-208ENST00000586407 UBR3Q6ZT12 1888 aa37.87■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms