RNA–Protein interactions for RNA: ENST00000586134.5

ZNF540-203, Transcript of zinc finger protein 540, humanhuman

TSL 5

Gene ZNF540, Length 2,038 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-203ENST00000586134 LMO7Q8WWI1 1683 aa12.52□□□□□ -0.4
ZNF540-203ENST00000586134 PUS7Q96PZ0 661 aaKnown RBP12.52□□□□□ -0.4
ZNF540-203ENST00000586134 DNAJC2Q99543 621 aaKnown RBP12.52□□□□□ -0.4
ZNF540-203ENST00000586134 SLIT3O75094 1523 aa12.52□□□□□ -0.41
ZNF540-203ENST00000586134 ZNF622Q969S3 477 aaKnown RBP eCLIP12.52□□□□□ -0.41
ZNF540-203ENST00000586134 ZNF692Q9BU19 519 aaPredicted RBP12.51□□□□□ -0.41
ZNF540-203ENST00000586134 THSD7AQ9UPZ6 1657 aa12.51□□□□□ -0.41
ZNF540-203ENST00000586134 CABP2Q9NPB3 220 aa12.5□□□□□ -0.41
ZNF540-203ENST00000586134 PIK3C2AO00443 1686 aa12.5□□□□□ -0.41
ZNF540-203ENST00000586134 NLRP13Q86W25 1043 aa12.5□□□□□ -0.41
ZNF540-203ENST00000586134 PRDM10Q9NQV6 1147 aa12.5□□□□□ -0.41
ZNF540-203ENST00000586134 CPSF1Q10570 1443 aaKnown RBP12.5□□□□□ -0.41
ZNF540-203ENST00000586134 PTMAP06454 111 aaKnown RBP12.49□□□□□ -0.41
ZNF540-203ENST00000586134 SLC4A3P48751 1232 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 PANK2Q9BZ23 570 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 CNPY4Q8N129 248 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 CARD11Q9BXL7 1154 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 PRDM11Q9NQV5 511 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 BTG4Q9NY30 223 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 CABP1Q9NZU7 370 aa12.49□□□□□ -0.41
ZNF540-203ENST00000586134 KIAA0232Q92628 1395 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 ABCC6O95255 1503 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 SPATA31A5Q5VU36 1347 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 SPATA31A7Q8IWB4 1347 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 TTC21AQ8NDW8 1320 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 ZSCAN30Q86W11 494 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 ABTB2Q8N961 1025 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 YY1AP1Q9H869 796 aa12.48□□□□□ -0.41
ZNF540-203ENST00000586134 GRPEL1Q9HAV7 217 aa12.47□□□□□ -0.41
ZNF540-203ENST00000586134 SEPT12Q8IYM1 358 aa12.47□□□□□ -0.41
ZNF540-203ENST00000586134 ARID3AQ99856 593 aa12.47□□□□□ -0.41
ZNF540-203ENST00000586134 COL18A1P39060 1754 aa12.46□□□□□ -0.41
ZNF540-203ENST00000586134 BLMP54132 1417 aaPredicted RBP12.46□□□□□ -0.41
ZNF540-203ENST00000586134 HDAC5Q9UQL6 1122 aa12.46□□□□□ -0.41
ZNF540-203ENST00000586134 NINLQ9Y2I6 1382 aa12.46□□□□□ -0.41
ZNF540-203ENST00000586134 RGPD1P0DJD0 1748 aa12.45□□□□□ -0.42
ZNF540-203ENST00000586134 CAMTA1Q9Y6Y1 1673 aa12.45□□□□□ -0.42
ZNF540-203ENST00000586134 GCP02774 474 aa12.45□□□□□ -0.42
ZNF540-203ENST00000586134 AATKQ6ZMQ8 1374 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 BECN1Q14457 450 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 PARP4Q9UKK3 1724 aaKnown RBP12.44□□□□□ -0.42
ZNF540-203ENST00000586134 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 USP31Q70CQ4 1352 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 CSPP1Q1MSJ5 1256 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 FAM161AQ3B820 660 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 KRT27Q7Z3Y8 459 aa12.44□□□□□ -0.42
ZNF540-203ENST00000586134 CCDC9Q9Y3X0 531 aaKnown RBP12.44□□□□□ -0.42
ZNF540-203ENST00000586134 TTC21BQ7Z4L5 1316 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 CD163L1Q9NR16 1453 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 UQCRHLA0A096LP55 91 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 UQCRHP07919 91 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 PSEN1P49768 467 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 GRIPAP1Q4V328 841 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 HS1BP3Q53T59 392 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 BARGINQ6ZT62 677 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 WWC1Q8IX03 1113 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 THRAP3Q9Y2W1 955 aaKnown RBP12.43□□□□□ -0.42
ZNF540-203ENST00000586134 WNK3Q9BYP7 1800 aa12.43□□□□□ -0.42
ZNF540-203ENST00000586134 KTN1Q86UP2 1357 aaKnown RBP12.42□□□□□ -0.42
ZNF540-203ENST00000586134 MSNP26038 577 aaKnown RBP12.42□□□□□ -0.42
ZNF540-203ENST00000586134 CCDC173Q0VFZ6 552 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 KCNH5Q8NCM2 988 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 TSPYL1Q9H0U9 437 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 GEMIN8Q9NWZ8 242 aaKnown RBP12.42□□□□□ -0.42
ZNF540-203ENST00000586134 COL5A2P05997 1499 aaPredicted RBP12.42□□□□□ -0.42
ZNF540-203ENST00000586134 NFAT5O94916 1531 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 EP400Q96L91 3159 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 NLRP6P59044 892 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 ZC3H6P61129 1189 aaKnown RBP12.42□□□□□ -0.42
ZNF540-203ENST00000586134 FAM193AP78312 1265 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 KCNG1Q9UIX4 513 aa12.42□□□□□ -0.42
ZNF540-203ENST00000586134 EDC4Q6P2E9 1401 aaKnown RBP12.41□□□□□ -0.42
ZNF540-203ENST00000586134 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.41□□□□□ -0.42
ZNF540-203ENST00000586134 APPP05067 770 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 CHRNA2Q15822 529 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 FAM98CQ17RN3 349 aaKnown RBP12.4□□□□□ -0.42
ZNF540-203ENST00000586134 NUTM2GQ5VZR2 741 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 FAM9BQ8IZU0 186 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 TESK2Q96S53 571 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 PPP1R9BQ96SB3 815 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 MRS2Q9HD23 443 aa12.4□□□□□ -0.42
ZNF540-203ENST00000586134 TNS1Q9HBL0 1735 aaKnown RBP12.4□□□□□ -0.42
ZNF540-203ENST00000586134 DISP2A7MBM2 1401 aa12.39□□□□□ -0.43
ZNF540-203ENST00000586134 CRB1P82279 1406 aa12.39□□□□□ -0.43
ZNF540-203ENST00000586134 ZNF500O60304 480 aaPredicted RBP12.39□□□□□ -0.43
ZNF540-203ENST00000586134 RRP1P56182 461 aaKnown RBP12.39□□□□□ -0.43
ZNF540-203ENST00000586134 IRX5P78411 483 aaPredicted RBP12.39□□□□□ -0.43
ZNF540-203ENST00000586134 RGPD5Q99666 1765 aa12.39□□□□□ -0.43
ZNF540-203ENST00000586134 HDGFL2Q7Z4V5 671 aaPredicted RBP12.38□□□□□ -0.43
ZNF540-203ENST00000586134 TERF2IPQ9NYB0 399 aa12.38□□□□□ -0.43
ZNF540-203ENST00000586134 R3HCC1Q9Y3T6 440 aaKnown RBP12.38□□□□□ -0.43
ZNF540-203ENST00000586134 LTN1O94822 1766 aa12.38□□□□□ -0.43
ZNF540-203ENST00000586134 EVA1CP58658 441 aa12.38□□□□□ -0.43
ZNF540-203ENST00000586134 SASS6Q6UVJ0 657 aa12.38□□□□□ -0.43
ZNF540-203ENST00000586134 ARHGEF25Q86VW2 580 aa12.38□□□□□ -0.43
ZNF540-203ENST00000586134 PRKRIP1Q9H875 184 aaPredicted RBP12.38□□□□□ -0.43
ZNF540-203ENST00000586134 TCP11L2Q8N4U5 519 aa12.37□□□□□ -0.43
ZNF540-203ENST00000586134 CGNQ9P2M7 1197 aaKnown RBP12.37□□□□□ -0.43
ZNF540-203ENST00000586134 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
ZNF540-203ENST00000586134 MCM4P33991 863 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms