RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 TUBGCP6Q96RT7 1819 aa16.35■□□□□ 0.21
LIG3-207ENST00000586119 MEGF6O75095 1541 aa16.35■□□□□ 0.21
LIG3-207ENST00000586119 DOT1LQ8TEK3 1739 aa16.34■□□□□ 0.21
LIG3-207ENST00000586119 UTRNP46939 3433 aa16.34■□□□□ 0.21
LIG3-207ENST00000586119 NSD2O96028 1365 aa16.34■□□□□ 0.21
LIG3-207ENST00000586119 KLHL34Q8N239 644 aa16.33■□□□□ 0.2
LIG3-207ENST00000586119 ZNF784Q8NCA9 323 aaPredicted RBP16.33■□□□□ 0.2
LIG3-207ENST00000586119 CHD4Q14839 1912 aa16.32■□□□□ 0.2
LIG3-207ENST00000586119 HSP90AB2PQ58FF8 381 aa16.32■□□□□ 0.2
LIG3-207ENST00000586119 SLC27A3Q5K4L6 730 aa16.32■□□□□ 0.2
LIG3-207ENST00000586119 ANKRD36BQ8N2N9 1353 aa16.32■□□□□ 0.2
LIG3-207ENST00000586119 TFCP2L1Q9NZI6 479 aa16.31■□□□□ 0.2
LIG3-207ENST00000586119 LY75O60449 1722 aa16.31■□□□□ 0.2
LIG3-207ENST00000586119 TMF1P82094 1093 aa16.3■□□□□ 0.2
LIG3-207ENST00000586119 QSER1Q2KHR3 1735 aa16.29■□□□□ 0.2
LIG3-207ENST00000586119 CARD14Q9BXL6 1004 aa16.29■□□□□ 0.2
LIG3-207ENST00000586119 CCNL1Q9UK58 526 aaPredicted RBP16.29■□□□□ 0.2
LIG3-207ENST00000586119 USP47Q96K76 1375 aa16.28■□□□□ 0.2
LIG3-207ENST00000586119 COL23A1Q86Y22 540 aaPredicted RBP16.28■□□□□ 0.2
LIG3-207ENST00000586119 NLGN2Q8NFZ4 835 aa16.28■□□□□ 0.2
LIG3-207ENST00000586119 COL24A1Q17RW2 1714 aa16.28■□□□□ 0.2
LIG3-207ENST00000586119 GPR162Q16538 588 aa16.27■□□□□ 0.2
LIG3-207ENST00000586119 SLC16A10Q8TF71 515 aa16.27■□□□□ 0.2
LIG3-207ENST00000586119 MSH5O43196 834 aa16.26■□□□□ 0.19
LIG3-207ENST00000586119 PELP1Q8IZL8 1130 aaKnown RBP16.26■□□□□ 0.19
LIG3-207ENST00000586119 RAPGEF4Q8WZA2 1011 aa16.26■□□□□ 0.19
LIG3-207ENST00000586119 MAP3K5Q99683 1374 aa16.26■□□□□ 0.19
LIG3-207ENST00000586119 SLC24A1O60721 1099 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 TATP17735 454 aaPredicted RBP16.25■□□□□ 0.19
LIG3-207ENST00000586119 POLD1P28340 1107 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 MSL1Q68DK7 614 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 SMIM5Q71RC9 77 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 EMILIN1Q9Y6C2 1016 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 RTL1A6NKG5 1358 aa16.25■□□□□ 0.19
LIG3-207ENST00000586119 KIF20BQ96Q89 1820 aa16.24■□□□□ 0.19
LIG3-207ENST00000586119 CYP27B1O15528 508 aa16.24■□□□□ 0.19
LIG3-207ENST00000586119 MPRIPQ6WCQ1 1025 aa16.24■□□□□ 0.19
LIG3-207ENST00000586119 INSRP06213 1382 aa16.24■□□□□ 0.19
LIG3-207ENST00000586119 TRIM26Q12899 539 aaPredicted RBP16.23■□□□□ 0.19
LIG3-207ENST00000586119 AMIGO3Q86WK7 504 aa16.22■□□□□ 0.19
LIG3-207ENST00000586119 ITGB4P16144 1822 aa16.22■□□□□ 0.19
LIG3-207ENST00000586119 PPM1GO15355 546 aaPredicted RBP16.21■□□□□ 0.19
LIG3-207ENST00000586119 YBX3P16989 372 aaKnown RBP eCLIP16.21■□□□□ 0.19
LIG3-207ENST00000586119 TAF1LQ8IZX4 1826 aa16.21■□□□□ 0.19
LIG3-207ENST00000586119 CGNL1Q0VF96 1302 aa16.2■□□□□ 0.18
LIG3-207ENST00000586119 NSD3Q9BZ95 1437 aa16.2■□□□□ 0.18
LIG3-207ENST00000586119 TOGARAM1Q9Y4F4 1720 aa16.2■□□□□ 0.18
LIG3-207ENST00000586119 MAP2P11137 1827 aaKnown RBP16.2■□□□□ 0.18
LIG3-207ENST00000586119 FLT4P35916 1363 aa16.2■□□□□ 0.18
LIG3-207ENST00000586119 SMG6Q86US8 1419 aaKnown RBP16.19■□□□□ 0.18
LIG3-207ENST00000586119 PCDH11XQ9BZA7 1347 aa16.19■□□□□ 0.18
LIG3-207ENST00000586119 PCDH11YQ9BZA8 1340 aa16.19■□□□□ 0.18
LIG3-207ENST00000586119 C5P01031 1676 aa16.18■□□□□ 0.18
LIG3-207ENST00000586119 PALLDQ8WX93 1383 aa16.18■□□□□ 0.18
LIG3-207ENST00000586119 PIGBQ92521 554 aa16.18■□□□□ 0.18
LIG3-207ENST00000586119 C1QTNF8P60827 252 aa16.17■□□□□ 0.18
LIG3-207ENST00000586119 CDCA8Q53HL2 280 aa16.17■□□□□ 0.18
LIG3-207ENST00000586119 EYA1Q99502 592 aa16.17■□□□□ 0.18
LIG3-207ENST00000586119 GOLGB1Q14789 3259 aaKnown RBP16.16■□□□□ 0.18
LIG3-207ENST00000586119 POLR3GLQ9BT43 218 aa16.16■□□□□ 0.18
LIG3-207ENST00000586119 PKD1L3Q7Z443 1732 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 SENP3-EIF4A1A0A087X0R7 540 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 PHF14O94880 888 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 TNNT2P45379 298 aaPredicted RBP16.14■□□□□ 0.17
LIG3-207ENST00000586119 NKX1-1Q15270 411 aaPredicted RBP16.14■□□□□ 0.17
LIG3-207ENST00000586119 POLKQ9UBT6 870 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 WWC3Q9ULE0 1092 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 WASHC2AQ641Q2 1341 aa16.14■□□□□ 0.17
LIG3-207ENST00000586119 KIF24Q5T7B8 1368 aa16.13■□□□□ 0.17
LIG3-207ENST00000586119 LINC00116Q8NCU8 138 aa16.13■□□□□ 0.17
LIG3-207ENST00000586119 ASAP1Q9ULH1 1129 aa16.13■□□□□ 0.17
LIG3-207ENST00000586119 C4BP0C0L5 1744 aa16.13■□□□□ 0.17
LIG3-207ENST00000586119 NCAPD2Q15021 1401 aa16.12■□□□□ 0.17
LIG3-207ENST00000586119 UBR3Q6ZT12 1888 aa16.12■□□□□ 0.17
LIG3-207ENST00000586119 AK7Q96M32 723 aa16.12■□□□□ 0.17
LIG3-207ENST00000586119 PCGF6Q9BYE7 350 aa16.12■□□□□ 0.17
LIG3-207ENST00000586119 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.11■□□□□ 0.17
LIG3-207ENST00000586119 ITPK1Q13572 414 aa16.11■□□□□ 0.17
LIG3-207ENST00000586119 SMARCC1Q92922 1105 aaPredicted RBP16.11■□□□□ 0.17
LIG3-207ENST00000586119 SPG7Q9UQ90 795 aa16.11■□□□□ 0.17
LIG3-207ENST00000586119 LOC102724428A0A0B4J2F2 783 aa16.1■□□□□ 0.17
LIG3-207ENST00000586119 SIK1P57059 783 aa16.1■□□□□ 0.17
LIG3-207ENST00000586119 EIF4A2Q14240 407 aaKnown RBP16.1■□□□□ 0.17
LIG3-207ENST00000586119 FLAD1Q8NFF5 587 aa16.1■□□□□ 0.17
LIG3-207ENST00000586119 ANKRD26Q9UPS8 1709 aa16.1■□□□□ 0.17
LIG3-207ENST00000586119 GRIN3BO60391 1043 aa16.09■□□□□ 0.17
LIG3-207ENST00000586119 PHKG2P15735 406 aa16.09■□□□□ 0.17
LIG3-207ENST00000586119 ATG3Q9NT62 314 aa16.09■□□□□ 0.17
LIG3-207ENST00000586119 CD2APQ9Y5K6 639 aa16.09■□□□□ 0.17
LIG3-207ENST00000586119 GIGYF1O75420 1035 aaPredicted RBP16.08■□□□□ 0.16
LIG3-207ENST00000586119 TMOD3Q9NYL9 352 aa16.08■□□□□ 0.16
LIG3-207ENST00000586119 ATP6V1AP38606 617 aa16.07■□□□□ 0.16
LIG3-207ENST00000586119 IFNL2Q8IZJ0 200 aa16.07■□□□□ 0.16
LIG3-207ENST00000586119 SLC4A9Q96Q91 983 aa16.07■□□□□ 0.16
LIG3-207ENST00000586119 PANK3Q9H999 370 aa16.06■□□□□ 0.16
LIG3-207ENST00000586119 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.06■□□□□ 0.16
LIG3-207ENST00000586119 GNPATO15228 680 aa16.05■□□□□ 0.16
LIG3-207ENST00000586119 HSPA5P11021 654 aaKnown RBP16.05■□□□□ 0.16
LIG3-207ENST00000586119 IGSF1Q8N6C5 1336 aa16.04■□□□□ 0.16
LIG3-207ENST00000586119 TIMELESSQ9UNS1 1208 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms