RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 COL23A1Q86Y22 540 aaPredicted RBP25.93■■□□□ 1.74
TOP3A-220ENST00000585031 SYTL4Q96C24 671 aaPredicted RBP25.93■■□□□ 1.74
TOP3A-220ENST00000585031 GPBP1L1Q9HC44 474 aaPredicted RBP25.93■■□□□ 1.74
TOP3A-220ENST00000585031 FAM208AQ9UK61 1670 aaKnown RBP25.93■■□□□ 1.74
TOP3A-220ENST00000585031 LTV1Q96GA3 475 aaPredicted RBP25.92■■□□□ 1.74
TOP3A-220ENST00000585031 SLC12A5Q9H2X9 1139 aa25.92■■□□□ 1.74
TOP3A-220ENST00000585031 ANKRD36BQ8N2N9 1353 aa25.92■■□□□ 1.74
TOP3A-220ENST00000585031 IP6K1Q92551 441 aa25.91■■□□□ 1.74
TOP3A-220ENST00000585031 FBLN1P23142 703 aa25.89■■□□□ 1.74
TOP3A-220ENST00000585031 MSL1Q68DK7 614 aa25.89■■□□□ 1.74
TOP3A-220ENST00000585031 ADCY9O60503 1353 aa25.87■■□□□ 1.73
TOP3A-220ENST00000585031 TMC1Q8TDI8 760 aa25.87■■□□□ 1.73
TOP3A-220ENST00000585031 CCNL1Q9UK58 526 aaPredicted RBP25.86■■□□□ 1.73
TOP3A-220ENST00000585031 CD2APQ9Y5K6 639 aa25.86■■□□□ 1.73
TOP3A-220ENST00000585031 EDC4Q6P2E9 1401 aaKnown RBP25.86■■□□□ 1.73
TOP3A-220ENST00000585031 MEGF6O75095 1541 aa25.85■■□□□ 1.73
TOP3A-220ENST00000585031 MSH5O43196 834 aa25.85■■□□□ 1.73
TOP3A-220ENST00000585031 A0A1W2PP64 1363 aa25.84■■□□□ 1.73
TOP3A-220ENST00000585031 TAF1LQ8IZX4 1826 aa25.82■■□□□ 1.72
TOP3A-220ENST00000585031 ZCRB1Q8TBF4 217 aaKnown RBP25.82■■□□□ 1.72
TOP3A-220ENST00000585031 C5P01031 1676 aa25.82■■□□□ 1.72
TOP3A-220ENST00000585031 HDGFL2Q7Z4V5 671 aaPredicted RBP25.81■■□□□ 1.72
TOP3A-220ENST00000585031 MAP3K19Q56UN5 1328 aa25.81■■□□□ 1.72
TOP3A-220ENST00000585031 HOXC9P31274 260 aa25.79■■□□□ 1.72
TOP3A-220ENST00000585031 NEUROD1Q13562 356 aa25.79■■□□□ 1.72
TOP3A-220ENST00000585031 ZNF526Q8TF50 670 aaPredicted RBP25.79■■□□□ 1.72
TOP3A-220ENST00000585031 AMIGO3Q86WK7 504 aa25.78■■□□□ 1.72
TOP3A-220ENST00000585031 KIF3CO14782 793 aa25.76■■□□□ 1.71
TOP3A-220ENST00000585031 SMIM5Q71RC9 77 aa25.76■■□□□ 1.71
TOP3A-220ENST00000585031 USP47Q96K76 1375 aa25.76■■□□□ 1.71
TOP3A-220ENST00000585031 TOGARAM1Q9Y4F4 1720 aa25.76■■□□□ 1.71
TOP3A-220ENST00000585031 DNAJC5GQ8N7S2 189 aa25.75■■□□□ 1.71
TOP3A-220ENST00000585031 NBPF6Q5VWK0 638 aa25.74■■□□□ 1.71
TOP3A-220ENST00000585031 USHBP1Q8N6Y0 703 aa25.74■■□□□ 1.71
TOP3A-220ENST00000585031 NBPF4Q96M43 638 aa25.74■■□□□ 1.71
TOP3A-220ENST00000585031 TERF2IPQ9NYB0 399 aa25.74■■□□□ 1.71
TOP3A-220ENST00000585031 WWC3Q9ULE0 1092 aa25.74■■□□□ 1.71
TOP3A-220ENST00000585031 FLAD1Q8NFF5 587 aa25.72■■□□□ 1.71
TOP3A-220ENST00000585031 AMPHP49418 695 aa25.71■■□□□ 1.71
TOP3A-220ENST00000585031 CARD11Q9BXL7 1154 aa25.71■■□□□ 1.71
TOP3A-220ENST00000585031 UBR3Q6ZT12 1888 aa25.7■■□□□ 1.71
TOP3A-220ENST00000585031 ITGB4P16144 1822 aa25.7■■□□□ 1.71
TOP3A-220ENST00000585031 APLP1P51693 650 aa25.7■■□□□ 1.7
TOP3A-220ENST00000585031 C4BP0C0L5 1744 aa25.69■■□□□ 1.7
TOP3A-220ENST00000585031 HMGB2P26583 209 aaKnown RBP25.68■■□□□ 1.7
TOP3A-220ENST00000585031 RRS1Q15050 365 aaKnown RBP25.68■■□□□ 1.7
TOP3A-220ENST00000585031 COG3Q96JB2 828 aa25.68■■□□□ 1.7
TOP3A-220ENST00000585031 IGSF1Q8N6C5 1336 aa25.67■■□□□ 1.7
TOP3A-220ENST00000585031 PALLDQ8WX93 1383 aa25.67■■□□□ 1.7
TOP3A-220ENST00000585031 PUS7Q96PZ0 661 aaKnown RBP25.65■■□□□ 1.7
TOP3A-220ENST00000585031 MPRIPQ6WCQ1 1025 aa25.64■■□□□ 1.7
TOP3A-220ENST00000585031 MAP2P11137 1827 aaKnown RBP25.63■■□□□ 1.69
TOP3A-220ENST00000585031 CYP27B1O15528 508 aa25.63■■□□□ 1.69
TOP3A-220ENST00000585031 CGNL1Q0VF96 1302 aa25.62■■□□□ 1.69
TOP3A-220ENST00000585031 TOMM70O94826 608 aa25.61■■□□□ 1.69
TOP3A-220ENST00000585031 TESK2Q96S53 571 aa25.61■■□□□ 1.69
TOP3A-220ENST00000585031 RTL1A6NKG5 1358 aa25.6■■□□□ 1.69
TOP3A-220ENST00000585031 PHF14O94880 888 aa25.6■■□□□ 1.69
TOP3A-220ENST00000585031 RAPGEF4Q8WZA2 1011 aa25.6■■□□□ 1.69
TOP3A-220ENST00000585031 TATP17735 454 aaPredicted RBP25.59■■□□□ 1.69
TOP3A-220ENST00000585031 HSP90AB2PQ58FF8 381 aa25.59■■□□□ 1.69
TOP3A-220ENST00000585031 KIAA1551Q9HCM1 1747 aa25.59■■□□□ 1.69
TOP3A-220ENST00000585031 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.58■■□□□ 1.69
TOP3A-220ENST00000585031 CICQ96RK0 1608 aaPredicted RBP25.57■■□□□ 1.68
TOP3A-220ENST00000585031 FYB1O15117 783 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 PIGBQ92521 554 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 AK7Q96M32 723 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 GGNBP2Q9H3C7 697 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 PCDH11XQ9BZA7 1347 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 PCDH11YQ9BZA8 1340 aa25.57■■□□□ 1.68
TOP3A-220ENST00000585031 LINC00116Q8NCU8 138 aa25.56■■□□□ 1.68
TOP3A-220ENST00000585031 N4BP2Q86UW6 1770 aaPredicted RBP25.56■■□□□ 1.68
TOP3A-220ENST00000585031 PKD1L3Q7Z443 1732 aa25.54■■□□□ 1.68
TOP3A-220ENST00000585031 KIF13BQ9NQT8 1826 aa25.54■■□□□ 1.68
TOP3A-220ENST00000585031 COL13A1Q5TAT6 717 aaPredicted RBP25.54■■□□□ 1.68
TOP3A-220ENST00000585031 ST20-MTHFSA0A0A6YYL1 179 aa25.53■■□□□ 1.68
TOP3A-220ENST00000585031 PCNTO95613 3336 aa25.52■■□□□ 1.68
TOP3A-220ENST00000585031 INSRP06213 1382 aa25.52■■□□□ 1.68
TOP3A-220ENST00000585031 ITPK1Q13572 414 aa25.51■■□□□ 1.67
TOP3A-220ENST00000585031 JMYQ8N9B5 988 aa25.51■■□□□ 1.67
TOP3A-220ENST00000585031 SMARCC1Q92922 1105 aaPredicted RBP25.51■■□□□ 1.67
TOP3A-220ENST00000585031 PXDNLA1KZ92 1463 aa25.5■■□□□ 1.67
TOP3A-220ENST00000585031 SSFA2P28290 1259 aa25.5■■□□□ 1.67
TOP3A-220ENST00000585031 SMG6Q86US8 1419 aaKnown RBP25.49■■□□□ 1.67
TOP3A-220ENST00000585031 LOC102724428A0A0B4J2F2 783 aa25.48■■□□□ 1.67
TOP3A-220ENST00000585031 SIK1P57059 783 aa25.48■■□□□ 1.67
TOP3A-220ENST00000585031 NKX1-1Q15270 411 aaPredicted RBP25.48■■□□□ 1.67
TOP3A-220ENST00000585031 KLRG1Q96E93 195 aa25.48■■□□□ 1.67
TOP3A-220ENST00000585031 NMRK2Q9NPI5 230 aa25.48■■□□□ 1.67
TOP3A-220ENST00000585031 RBM46Q8TBY0 533 aaKnown RBP25.47■■□□□ 1.67
TOP3A-220ENST00000585031 ASAP1Q9ULH1 1129 aa25.47■■□□□ 1.67
TOP3A-220ENST00000585031 KIF20BQ96Q89 1820 aa25.47■■□□□ 1.67
TOP3A-220ENST00000585031 NSD3Q9BZ95 1437 aa25.46■■□□□ 1.67
TOP3A-220ENST00000585031 FLT4P35916 1363 aa25.45■■□□□ 1.67
TOP3A-220ENST00000585031 MMP10P09238 476 aa25.45■■□□□ 1.66
TOP3A-220ENST00000585031 TGFB2P61812 414 aa25.45■■□□□ 1.66
TOP3A-220ENST00000585031 NCAPD2Q15021 1401 aa25.45■■□□□ 1.66
TOP3A-220ENST00000585031 BRCA1P38398 1863 aaKnown RBP25.45■■□□□ 1.66
TOP3A-220ENST00000585031 WDR90Q96KV7 1748 aa25.44■■□□□ 1.66
TOP3A-220ENST00000585031 A0A0G2JLW4 131 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms