RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 AMPHP49418 695 aa21.94■■□□□ 1.1
SKA2-209ENST00000583976 GGNBP2Q9H3C7 697 aa21.94■■□□□ 1.1
SKA2-209ENST00000583976 KCNQ4P56696 695 aa21.93■■□□□ 1.1
SKA2-209ENST00000583976 USHBP1Q8N6Y0 703 aa21.93■■□□□ 1.1
SKA2-209ENST00000583976 TIMELESSQ9UNS1 1208 aa21.92■■□□□ 1.1
SKA2-209ENST00000583976 SYTL4Q96C24 671 aaPredicted RBP21.91■■□□□ 1.1
SKA2-209ENST00000583976 GOLGB1Q14789 3259 aaKnown RBP21.91■■□□□ 1.1
SKA2-209ENST00000583976 COL24A1Q17RW2 1714 aa21.9■■□□□ 1.1
SKA2-209ENST00000583976 TOGARAM1Q9Y4F4 1720 aa21.89■■□□□ 1.1
SKA2-209ENST00000583976 FYB1O15117 783 aa21.89■■□□□ 1.09
SKA2-209ENST00000583976 AKT1S1Q96B36 256 aa21.89■■□□□ 1.09
SKA2-209ENST00000583976 SYT17Q9BSW7 474 aa21.89■■□□□ 1.09
SKA2-209ENST00000583976 DCAF8L1A6NGE4 600 aa21.88■■□□□ 1.09
SKA2-209ENST00000583976 PRIM1P49642 420 aaKnown RBP21.88■■□□□ 1.09
SKA2-209ENST00000583976 TMF1P82094 1093 aa21.88■■□□□ 1.09
SKA2-209ENST00000583976 NBPF6Q5VWK0 638 aa21.88■■□□□ 1.09
SKA2-209ENST00000583976 NBPF4Q96M43 638 aa21.88■■□□□ 1.09
SKA2-209ENST00000583976 ANKRD26Q9UPS8 1709 aa21.88■■□□□ 1.09
SKA2-209ENST00000583976 SMG6Q86US8 1419 aaKnown RBP21.88■■□□□ 1.09
SKA2-209ENST00000583976 PNPLA7Q6ZV29 1317 aa21.87■■□□□ 1.09
SKA2-209ENST00000583976 ZCRB1Q8TBF4 217 aaKnown RBP21.86■■□□□ 1.09
SKA2-209ENST00000583976 ARXQ96QS3 562 aa21.86■■□□□ 1.09
SKA2-209ENST00000583976 NSD3Q9BZ95 1437 aa21.86■■□□□ 1.09
SKA2-209ENST00000583976 C5P01031 1676 aa21.85■■□□□ 1.09
SKA2-209ENST00000583976 PKD1L3Q7Z443 1732 aa21.84■■□□□ 1.09
SKA2-209ENST00000583976 SLC27A3Q5K4L6 730 aa21.84■■□□□ 1.09
SKA2-209ENST00000583976 MAP3K5Q99683 1374 aa21.84■■□□□ 1.09
SKA2-209ENST00000583976 HSP90AB2PQ58FF8 381 aa21.83■■□□□ 1.09
SKA2-209ENST00000583976 INSRP06213 1382 aa21.83■■□□□ 1.08
SKA2-209ENST00000583976 FLT4P35916 1363 aa21.83■■□□□ 1.08
SKA2-209ENST00000583976 CHD4Q14839 1912 aa21.81■■□□□ 1.08
SKA2-209ENST00000583976 SLC24A1O60721 1099 aa21.81■■□□□ 1.08
SKA2-209ENST00000583976 KLHL34Q8N239 644 aa21.8■■□□□ 1.08
SKA2-209ENST00000583976 CARD14Q9BXL6 1004 aa21.8■■□□□ 1.08
SKA2-209ENST00000583976 EMILIN1Q9Y6C2 1016 aa21.8■■□□□ 1.08
SKA2-209ENST00000583976 ITGB4P16144 1822 aa21.79■■□□□ 1.08
SKA2-209ENST00000583976 TAF1LQ8IZX4 1826 aa21.79■■□□□ 1.08
SKA2-209ENST00000583976 RAPGEF4Q8WZA2 1011 aa21.79■■□□□ 1.08
SKA2-209ENST00000583976 TFCP2L1Q9NZI6 479 aa21.79■■□□□ 1.08
SKA2-209ENST00000583976 CCNL1Q9UK58 526 aaPredicted RBP21.79■■□□□ 1.08
SKA2-209ENST00000583976 NCAPD2Q15021 1401 aa21.77■■□□□ 1.08
SKA2-209ENST00000583976 PCDH11XQ9BZA7 1347 aa21.77■■□□□ 1.07
SKA2-209ENST00000583976 PCDH11YQ9BZA8 1340 aa21.77■■□□□ 1.07
SKA2-209ENST00000583976 TATP17735 454 aaPredicted RBP21.76■■□□□ 1.07
SKA2-209ENST00000583976 ZNF784Q8NCA9 323 aaPredicted RBP21.76■■□□□ 1.07
SKA2-209ENST00000583976 CGNL1Q0VF96 1302 aa21.76■■□□□ 1.07
SKA2-209ENST00000583976 KIF24Q5T7B8 1368 aa21.75■■□□□ 1.07
SKA2-209ENST00000583976 PALLDQ8WX93 1383 aa21.74■■□□□ 1.07
SKA2-209ENST00000583976 NLGN2Q8NFZ4 835 aa21.74■■□□□ 1.07
SKA2-209ENST00000583976 C4BP0C0L5 1744 aa21.74■■□□□ 1.07
SKA2-209ENST00000583976 CYP27B1O15528 508 aa21.73■■□□□ 1.07
SKA2-209ENST00000583976 POLD1P28340 1107 aa21.73■■□□□ 1.07
SKA2-209ENST00000583976 CDCA8Q53HL2 280 aa21.73■■□□□ 1.07
SKA2-209ENST00000583976 SLC16A10Q8TF71 515 aa21.73■■□□□ 1.07
SKA2-209ENST00000583976 MAP2P11137 1827 aaKnown RBP21.72■■□□□ 1.07
SKA2-209ENST00000583976 MSL1Q68DK7 614 aa21.72■■□□□ 1.07
SKA2-209ENST00000583976 COL23A1Q86Y22 540 aaPredicted RBP21.71■■□□□ 1.07
SKA2-209ENST00000583976 PPM1GO15355 546 aaPredicted RBP21.7■■□□□ 1.06
SKA2-209ENST00000583976 UBR3Q6ZT12 1888 aa21.69■■□□□ 1.06
SKA2-209ENST00000583976 MSH5O43196 834 aa21.69■■□□□ 1.06
SKA2-209ENST00000583976 MPRIPQ6WCQ1 1025 aa21.69■■□□□ 1.06
SKA2-209ENST00000583976 AMIGO3Q86WK7 504 aa21.69■■□□□ 1.06
SKA2-209ENST00000583976 PELP1Q8IZL8 1130 aaKnown RBP21.69■■□□□ 1.06
SKA2-209ENST00000583976 GPR162Q16538 588 aa21.68■■□□□ 1.06
SKA2-209ENST00000583976 POLR3GLQ9BT43 218 aa21.67■■□□□ 1.06
SKA2-209ENST00000583976 SMIM5Q71RC9 77 aa21.65■■□□□ 1.06
SKA2-209ENST00000583976 EYA1Q99502 592 aa21.64■■□□□ 1.05
SKA2-209ENST00000583976 WASHC2AQ641Q2 1341 aa21.63■■□□□ 1.05
SKA2-209ENST00000583976 YBX3P16989 372 aaKnown RBP eCLIP21.62■■□□□ 1.054e-8■□□□□ 8.4
SKA2-209ENST00000583976 TNNT2P45379 298 aaPredicted RBP21.62■■□□□ 1.05
SKA2-209ENST00000583976 PIGBQ92521 554 aa21.62■■□□□ 1.05
SKA2-209ENST00000583976 POLKQ9UBT6 870 aa21.62■■□□□ 1.05
SKA2-209ENST00000583976 PHF14O94880 888 aa21.6■■□□□ 1.05
SKA2-209ENST00000583976 EIF4A2Q14240 407 aaKnown RBP21.59■■□□□ 1.05
SKA2-209ENST00000583976 AK7Q96M32 723 aa21.59■■□□□ 1.05
SKA2-209ENST00000583976 NKX1-1Q15270 411 aaPredicted RBP21.58■■□□□ 1.05
SKA2-209ENST00000583976 LINC00116Q8NCU8 138 aa21.58■■□□□ 1.05
SKA2-209ENST00000583976 SPG7Q9UQ90 795 aa21.58■■□□□ 1.05
SKA2-209ENST00000583976 SMARCC1Q92922 1105 aaPredicted RBP21.57■■□□□ 1.04
SKA2-209ENST00000583976 PHKG2P15735 406 aa21.56■■□□□ 1.04
SKA2-209ENST00000583976 LOC102724428A0A0B4J2F2 783 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 HSPA5P11021 654 aaKnown RBP21.55■■□□□ 1.04
SKA2-209ENST00000583976 SIK1P57059 783 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 EIF4G2P78344 907 aaKnown RBP eCLIP21.55■■□□□ 1.046e-6■■■■□ 25.1
SKA2-209ENST00000583976 ITPK1Q13572 414 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 TMOD3Q9NYL9 352 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 ASAP1Q9ULH1 1129 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 KDRP35968 1356 aa21.55■■□□□ 1.04
SKA2-209ENST00000583976 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.54■■□□□ 1.04
SKA2-209ENST00000583976 COL5A3P25940 1745 aaPredicted RBP21.54■■□□□ 1.04
SKA2-209ENST00000583976 IGSF1Q8N6C5 1336 aa21.54■■□□□ 1.04
SKA2-209ENST00000583976 WWC3Q9ULE0 1092 aa21.53■■□□□ 1.04
SKA2-209ENST00000583976 KDM6AO15550 1401 aaPredicted RBP21.53■■□□□ 1.04
SKA2-209ENST00000583976 FLAD1Q8NFF5 587 aa21.52■■□□□ 1.04
SKA2-209ENST00000583976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.52■■□□□ 1.04
SKA2-209ENST00000583976 SENP3-EIF4A1A0A087X0R7 540 aa21.51■■□□□ 1.03
SKA2-209ENST00000583976 C1QTNF8P60827 252 aa21.51■■□□□ 1.03
SKA2-209ENST00000583976 IFNL2Q8IZJ0 200 aa21.51■■□□□ 1.03
SKA2-209ENST00000583976 PANK3Q9H999 370 aa21.51■■□□□ 1.03
SKA2-209ENST00000583976 KIAA1551Q9HCM1 1747 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms