RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 RSPH6AQ9H0K4 717 aa14.53□□□□□ -0.08
TOP3A-216ENST00000583804 PNNQ9H307 717 aaKnown RBP14.53□□□□□ -0.08
TOP3A-216ENST00000583804 KDRP35968 1356 aa14.52□□□□□ -0.08
TOP3A-216ENST00000583804 RGPD1P0DJD0 1748 aa14.52□□□□□ -0.08
TOP3A-216ENST00000583804 NEFMP07197 916 aa14.52□□□□□ -0.08
TOP3A-216ENST00000583804 CDCA7Q9BWT1 371 aaPredicted RBP14.52□□□□□ -0.08
TOP3A-216ENST00000583804 HNRNPUQ00839 825 aaKnown RBP eCLIP14.51□□□□□ -0.09
TOP3A-216ENST00000583804 NCAPD2Q15021 1401 aa14.51□□□□□ -0.09
TOP3A-216ENST00000583804 GLI3P10071 1580 aa14.51□□□□□ -0.09
TOP3A-216ENST00000583804 PLEKHO1Q53GL0 409 aaPredicted RBP14.5□□□□□ -0.09
TOP3A-216ENST00000583804 SALL2Q9Y467 1007 aaPredicted RBP14.5□□□□□ -0.09
TOP3A-216ENST00000583804 MAPK8IP3Q9UPT6 1336 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 MEGF6O75095 1541 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 EXOC5O00471 708 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 DDB1Q16531 1140 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 SEPT12Q8IYM1 358 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 ZCRB1Q8TBF4 217 aaKnown RBP14.5□□□□□ -0.09
TOP3A-216ENST00000583804 PHACTR3Q96KR7 559 aa14.5□□□□□ -0.09
TOP3A-216ENST00000583804 ONECUT3O60422 494 aaPredicted RBP14.49□□□□□ -0.09
TOP3A-216ENST00000583804 DDX54Q8TDD1 881 aaKnown RBP14.49□□□□□ -0.09
TOP3A-216ENST00000583804 RUNDC1Q96C34 613 aa14.49□□□□□ -0.09
TOP3A-216ENST00000583804 SPG7Q9UQ90 795 aa14.49□□□□□ -0.09
TOP3A-216ENST00000583804 DISP2A7MBM2 1401 aa14.49□□□□□ -0.09
TOP3A-216ENST00000583804 PDE3BQ13370 1112 aa14.48□□□□□ -0.09
TOP3A-216ENST00000583804 AMOTQ4VCS5 1084 aa14.48□□□□□ -0.09
TOP3A-216ENST00000583804 PLEKHF1Q96S99 279 aa14.48□□□□□ -0.09
TOP3A-216ENST00000583804 OVOS2A0A0G2JMS6 1433 aa14.47□□□□□ -0.09
TOP3A-216ENST00000583804 MTHFSDQ2M296 383 aaKnown RBP14.46□□□□□ -0.09
TOP3A-216ENST00000583804 ZNF530Q6P9A1 599 aaPredicted RBP14.46□□□□□ -0.09
TOP3A-216ENST00000583804 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.46□□□□□ -0.092e-7■■□□□ 13.3
TOP3A-216ENST00000583804 PARP4Q9UKK3 1724 aaKnown RBP14.45□□□□□ -0.1
TOP3A-216ENST00000583804 APAF1O14727 1248 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 NEUROD2Q15784 382 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 C1orf141Q5JVX7 400 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 GAS2L2Q8NHY3 880 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 RRP7AQ9Y3A4 280 aaKnown RBP14.44□□□□□ -0.1
TOP3A-216ENST00000583804 NFE2L2Q16236 605 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 IFNL2Q8IZJ0 200 aa14.44□□□□□ -0.1
TOP3A-216ENST00000583804 PCDH11XQ9BZA7 1347 aa14.43□□□□□ -0.1
TOP3A-216ENST00000583804 PCDH11YQ9BZA8 1340 aa14.43□□□□□ -0.1
TOP3A-216ENST00000583804 CYP27B1O15528 508 aa14.43□□□□□ -0.1
TOP3A-216ENST00000583804 MARCH10Q8NA82 808 aaPredicted RBP14.43□□□□□ -0.1
TOP3A-216ENST00000583804 TNS2Q63HR2 1409 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 THSD7AQ9UPZ6 1657 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 WNK3Q9BYP7 1800 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 PLEKHG2Q9H7P9 1386 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 PHKG2P15735 406 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 TMPOP42166 694 aaKnown RBP14.42□□□□□ -0.1
TOP3A-216ENST00000583804 RIPK4P57078 832 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 AKAP4Q5JQC9 854 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 KRT27Q7Z3Y8 459 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 RGS12O14924 1447 aa14.42□□□□□ -0.1
TOP3A-216ENST00000583804 FAM182BQ5T319 152 aa14.41□□□□□ -0.1
TOP3A-216ENST00000583804 LRRC37A3O60309 1634 aa14.41□□□□□ -0.1
TOP3A-216ENST00000583804 GNAT3A8MTJ3 354 aa14.4□□□□□ -0.1
TOP3A-216ENST00000583804 MPRIPQ6WCQ1 1025 aa14.4□□□□□ -0.1
TOP3A-216ENST00000583804 RTF1Q92541 710 aaKnown RBP14.4□□□□□ -0.1
TOP3A-216ENST00000583804 HSP90AB1P08238 724 aaKnown RBP14.39□□□□□ -0.11
TOP3A-216ENST00000583804 PKD1L3Q7Z443 1732 aa14.39□□□□□ -0.11
TOP3A-216ENST00000583804 MAP3K5Q99683 1374 aa14.38□□□□□ -0.11
TOP3A-216ENST00000583804 DCTN1Q14203 1278 aa14.38□□□□□ -0.11
TOP3A-216ENST00000583804 NKX1-1Q15270 411 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-216ENST00000583804 DCAF5Q96JK2 942 aa14.38□□□□□ -0.11
TOP3A-216ENST00000583804 LGR6Q9HBX8 967 aa14.38□□□□□ -0.11
TOP3A-216ENST00000583804 LMOD3Q0VAK6 560 aa14.37□□□□□ -0.11
TOP3A-216ENST00000583804 MCM10Q7L590 875 aa14.37□□□□□ -0.11
TOP3A-216ENST00000583804 ACSBG1Q96GR2 724 aa14.37□□□□□ -0.11
TOP3A-216ENST00000583804 RNMTO43148 476 aaKnown RBP14.36□□□□□ -0.11
TOP3A-216ENST00000583804 HTATSF1O43719 755 aaKnown RBP14.36□□□□□ -0.11
TOP3A-216ENST00000583804 FAM196AQ6ZSG2 479 aa14.36□□□□□ -0.11
TOP3A-216ENST00000583804 IL17REQ8NFR9 667 aa14.36□□□□□ -0.11
TOP3A-216ENST00000583804 SYTL4Q96C24 671 aaPredicted RBP14.36□□□□□ -0.11
TOP3A-216ENST00000583804 SHANK3Q9BYB0 1731 aa14.36□□□□□ -0.11
TOP3A-216ENST00000583804 BRWD3Q6RI45 1802 aa14.35□□□□□ -0.11
TOP3A-216ENST00000583804 THUMPD2Q9BTF0 503 aaKnown RBP14.35□□□□□ -0.11
TOP3A-216ENST00000583804 TRIM35Q9UPQ4 493 aa14.35□□□□□ -0.11
TOP3A-216ENST00000583804 PRIM1P49642 420 aaKnown RBP14.34□□□□□ -0.11
TOP3A-216ENST00000583804 CABP4P57796 275 aa14.34□□□□□ -0.11
TOP3A-216ENST00000583804 ZBED9Q6R2W3 1325 aa14.34□□□□□ -0.11
TOP3A-216ENST00000583804 ERVV-2B6SEH9 535 aa14.33□□□□□ -0.12
TOP3A-216ENST00000583804 TEFQ10587 303 aa14.33□□□□□ -0.12
TOP3A-216ENST00000583804 KDM6AO15550 1401 aaPredicted RBP14.33□□□□□ -0.12
TOP3A-216ENST00000583804 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
TOP3A-216ENST00000583804 WWC1Q8IX03 1113 aa14.32□□□□□ -0.12
TOP3A-216ENST00000583804 NGEFQ8N5V2 710 aa14.32□□□□□ -0.12
TOP3A-216ENST00000583804 NFATC2IPQ8NCF5 419 aa14.32□□□□□ -0.12
TOP3A-216ENST00000583804 KCNQ2O43526 872 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 NCBP3Q53F19 620 aaKnown RBP14.31□□□□□ -0.12
TOP3A-216ENST00000583804 TMOD3Q9NYL9 352 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 GTF3C3Q9Y5Q9 886 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 DLG5Q8TDM6 1919 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 TRIM37O94972 964 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 SLC52A2Q9HAB3 445 aa14.31□□□□□ -0.12
TOP3A-216ENST00000583804 LAS1LQ9Y4W2 734 aaKnown RBP14.31□□□□□ -0.12
TOP3A-216ENST00000583804 CALD1Q05682 793 aaKnown RBP14.3□□□□□ -0.12
TOP3A-216ENST00000583804 PIGBQ92521 554 aa14.3□□□□□ -0.12
TOP3A-216ENST00000583804 CDCA7LQ96GN5 454 aa14.3□□□□□ -0.12
TOP3A-216ENST00000583804 KAT6BQ8WYB5 2073 aa14.29□□□□□ -0.12
TOP3A-216ENST00000583804 BCL9O00512 1426 aa14.29□□□□□ -0.12
TOP3A-216ENST00000583804 CEMIPQ8WUJ3 1361 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms