RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 NSD2O96028 1365 aa30.87■■■□□ 2.53
SHMT1-210ENST00000583780 POLD1P28340 1107 aa30.86■■■□□ 2.53
SHMT1-210ENST00000583780 SYTL4Q96C24 671 aaPredicted RBP30.86■■■□□ 2.53
SHMT1-210ENST00000583780 SHANK3Q9BYB0 1731 aa30.86■■■□□ 2.53
SHMT1-210ENST00000583780 ZCRB1Q8TBF4 217 aaKnown RBP30.85■■■□□ 2.53
SHMT1-210ENST00000583780 TESK2Q96S53 571 aa30.85■■■□□ 2.53
SHMT1-210ENST00000583780 KLHL34Q8N239 644 aa30.84■■■□□ 2.53
SHMT1-210ENST00000583780 GOLGB1Q14789 3259 aaKnown RBP30.84■■■□□ 2.53
SHMT1-210ENST00000583780 DOT1LQ8TEK3 1739 aa30.84■■■□□ 2.53
SHMT1-210ENST00000583780 NLGN2Q8NFZ4 835 aa30.83■■■□□ 2.53
SHMT1-210ENST00000583780 SENP3-EIF4A1A0A087X0R7 540 aa30.82■■■□□ 2.52
SHMT1-210ENST00000583780 COG3Q96JB2 828 aa30.82■■■□□ 2.52
SHMT1-210ENST00000583780 AMPHP49418 695 aa30.8■■■□□ 2.52
SHMT1-210ENST00000583780 MEGF6O75095 1541 aa30.79■■■□□ 2.52
SHMT1-210ENST00000583780 NBPF6Q5VWK0 638 aa30.78■■■□□ 2.52
SHMT1-210ENST00000583780 COL23A1Q86Y22 540 aaPredicted RBP30.78■■■□□ 2.52
SHMT1-210ENST00000583780 NBPF4Q96M43 638 aa30.78■■■□□ 2.52
SHMT1-210ENST00000583780 ST20-MTHFSA0A0A6YYL1 179 aa30.77■■■□□ 2.52
SHMT1-210ENST00000583780 CCNL1Q9UK58 526 aaPredicted RBP30.77■■■□□ 2.52
SHMT1-210ENST00000583780 PELP1Q8IZL8 1130 aaKnown RBP30.76■■■□□ 2.51
SHMT1-210ENST00000583780 YBX3P16989 372 aaKnown RBP eCLIP30.73■■■□□ 2.51
SHMT1-210ENST00000583780 RRS1Q15050 365 aaKnown RBP30.73■■■□□ 2.51
SHMT1-210ENST00000583780 FYB1O15117 783 aa30.72■■■□□ 2.51
SHMT1-210ENST00000583780 TONSLQ96HA7 1378 aa30.7■■■□□ 2.51
SHMT1-210ENST00000583780 USHBP1Q8N6Y0 703 aa30.7■■■□□ 2.51
SHMT1-210ENST00000583780 USP47Q96K76 1375 aa30.69■■■□□ 2.5
SHMT1-210ENST00000583780 GIGYF1O75420 1035 aaPredicted RBP30.68■■■□□ 2.5
SHMT1-210ENST00000583780 CGNL1Q0VF96 1302 aa30.68■■■□□ 2.5
SHMT1-210ENST00000583780 RTL1A6NKG5 1358 aa30.67■■■□□ 2.5
SHMT1-210ENST00000583780 MSH5O43196 834 aa30.67■■■□□ 2.5
SHMT1-210ENST00000583780 GGNBP2Q9H3C7 697 aa30.67■■■□□ 2.5
SHMT1-210ENST00000583780 GRIN3BO60391 1043 aa30.66■■■□□ 2.5
SHMT1-210ENST00000583780 SLC24A1O60721 1099 aa30.65■■■□□ 2.5
SHMT1-210ENST00000583780 TAF1LQ8IZX4 1826 aa30.64■■■□□ 2.5
SHMT1-210ENST00000583780 HSP90AB2PQ58FF8 381 aa30.64■■■□□ 2.5
SHMT1-210ENST00000583780 MSL1Q68DK7 614 aa30.64■■■□□ 2.5
SHMT1-210ENST00000583780 RAPGEF4Q8WZA2 1011 aa30.64■■■□□ 2.5
SHMT1-210ENST00000583780 C5P01031 1676 aa30.62■■■□□ 2.49
SHMT1-210ENST00000583780 TATP17735 454 aaPredicted RBP30.61■■■□□ 2.49
SHMT1-210ENST00000583780 INSRP06213 1382 aa30.59■■■□□ 2.49
SHMT1-210ENST00000583780 CYP27B1O15528 508 aa30.58■■■□□ 2.49
SHMT1-210ENST00000583780 MPRIPQ6WCQ1 1025 aa30.58■■■□□ 2.49
SHMT1-210ENST00000583780 CD2APQ9Y5K6 639 aa30.58■■■□□ 2.49
SHMT1-210ENST00000583780 ITGB4P16144 1822 aa30.58■■■□□ 2.49
SHMT1-210ENST00000583780 AMIGO3Q86WK7 504 aa30.57■■■□□ 2.48
SHMT1-210ENST00000583780 PCDH11XQ9BZA7 1347 aa30.56■■■□□ 2.48
SHMT1-210ENST00000583780 PCDH11YQ9BZA8 1340 aa30.56■■■□□ 2.48
SHMT1-210ENST00000583780 FLAD1Q8NFF5 587 aa30.56■■■□□ 2.48
SHMT1-210ENST00000583780 PALLDQ8WX93 1383 aa30.55■■■□□ 2.48
SHMT1-210ENST00000583780 CEP350Q5VT06 3117 aa30.54■■■□□ 2.48
SHMT1-210ENST00000583780 SMG6Q86US8 1419 aaKnown RBP30.54■■■□□ 2.48
SHMT1-210ENST00000583780 TOGARAM1Q9Y4F4 1720 aa30.53■■■□□ 2.48
SHMT1-210ENST00000583780 TMF1P82094 1093 aa30.52■■■□□ 2.48
SHMT1-210ENST00000583780 HMGB2P26583 209 aaKnown RBP30.51■■■□□ 2.47
SHMT1-210ENST00000583780 SMIM5Q71RC9 77 aa30.51■■■□□ 2.47
SHMT1-210ENST00000583780 FLT4P35916 1363 aa30.51■■■□□ 2.47
SHMT1-210ENST00000583780 KIF24Q5T7B8 1368 aa30.51■■■□□ 2.47
SHMT1-210ENST00000583780 C4BP0C0L5 1744 aa30.5■■■□□ 2.47
SHMT1-210ENST00000583780 ATP10DQ9P241 1426 aa30.5■■■□□ 2.47
SHMT1-210ENST00000583780 CARD14Q9BXL6 1004 aa30.5■■■□□ 2.47
SHMT1-210ENST00000583780 KIF20BQ96Q89 1820 aa30.5■■■□□ 2.47
SHMT1-210ENST00000583780 UBR3Q6ZT12 1888 aa30.49■■■□□ 2.47
SHMT1-210ENST00000583780 PIGBQ92521 554 aa30.49■■■□□ 2.47
SHMT1-210ENST00000583780 NKX1-1Q15270 411 aaPredicted RBP30.48■■■□□ 2.47
SHMT1-210ENST00000583780 SMARCC1Q92922 1105 aaPredicted RBP30.48■■■□□ 2.47
SHMT1-210ENST00000583780 MAP2P11137 1827 aaKnown RBP30.47■■■□□ 2.47
SHMT1-210ENST00000583780 EMILIN1Q9Y6C2 1016 aa30.47■■■□□ 2.47
SHMT1-210ENST00000583780 PKD1L3Q7Z443 1732 aa30.46■■■□□ 2.47
SHMT1-210ENST00000583780 AK7Q96M32 723 aa30.44■■■□□ 2.46
SHMT1-210ENST00000583780 ADCY9O60503 1353 aa30.43■■■□□ 2.46
SHMT1-210ENST00000583780 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.43■■■□□ 2.46
SHMT1-210ENST00000583780 NCAPD2Q15021 1401 aa30.43■■■□□ 2.46
SHMT1-210ENST00000583780 PHF14O94880 888 aa30.41■■■□□ 2.46
SHMT1-210ENST00000583780 IFFO2Q5TF58 517 aa30.41■■■□□ 2.46
SHMT1-210ENST00000583780 LINC00116Q8NCU8 138 aa30.41■■■□□ 2.46
SHMT1-210ENST00000583780 GPBP1L1Q9HC44 474 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-210ENST00000583780 LOC102724428A0A0B4J2F2 783 aa30.39■■■□□ 2.46
SHMT1-210ENST00000583780 SIK1P57059 783 aa30.39■■■□□ 2.46
SHMT1-210ENST00000583780 IGSF1Q8N6C5 1336 aa30.39■■■□□ 2.46
SHMT1-210ENST00000583780 EYA1Q99502 592 aa30.38■■■□□ 2.45
SHMT1-210ENST00000583780 SSFA2P28290 1259 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 CDCA8Q53HL2 280 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 WWC3Q9ULE0 1092 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 ASAP1Q9ULH1 1129 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 SPG7Q9UQ90 795 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 WASHC2AQ641Q2 1341 aa30.37■■■□□ 2.45
SHMT1-210ENST00000583780 ITPK1Q13572 414 aa30.36■■■□□ 2.45
SHMT1-210ENST00000583780 PPM1GO15355 546 aaPredicted RBP30.35■■■□□ 2.45
SHMT1-210ENST00000583780 ZNF526Q8TF50 670 aaPredicted RBP30.35■■■□□ 2.45
SHMT1-210ENST00000583780 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.35■■■□□ 2.45
SHMT1-210ENST00000583780 ANKRD26Q9UPS8 1709 aa30.33■■■□□ 2.45
SHMT1-210ENST00000583780 NSD3Q9BZ95 1437 aa30.33■■■□□ 2.45
SHMT1-210ENST00000583780 HSPA6P17066 643 aa30.31■■■□□ 2.44
SHMT1-210ENST00000583780 ATG3Q9NT62 314 aa30.31■■■□□ 2.44
SHMT1-210ENST00000583780 TMOD3Q9NYL9 352 aa30.31■■■□□ 2.44
SHMT1-210ENST00000583780 PHKG2P15735 406 aa30.3■■■□□ 2.44
SHMT1-210ENST00000583780 ATP6V1AP38606 617 aa30.3■■■□□ 2.44
SHMT1-210ENST00000583780 TRIM26Q12899 539 aaPredicted RBP30.3■■■□□ 2.44
SHMT1-210ENST00000583780 POLKQ9UBT6 870 aa30.3■■■□□ 2.44
SHMT1-210ENST00000583780 IFNL2Q8IZJ0 200 aa30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms