RNA–Protein interactions for RNA: ENST00000583741.1

SRSF1-206, Transcript of serine and arginine rich splicing factor 1, humanhuman

TSL 5

Gene SRSF1, Length 1,465 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-206ENST00000583741 COG3Q96JB2 828 aa28.8■■■□□ 2.2
SRSF1-206ENST00000583741 MEGF6O75095 1541 aa28.8■■■□□ 2.2
SRSF1-206ENST00000583741 ST20-MTHFSA0A0A6YYL1 179 aa28.79■■■□□ 2.2
SRSF1-206ENST00000583741 KCNQ4P56696 695 aa28.79■■■□□ 2.2
SRSF1-206ENST00000583741 SLC27A3Q5K4L6 730 aa28.79■■■□□ 2.2
SRSF1-206ENST00000583741 NSD2O96028 1365 aa28.79■■■□□ 2.2
SRSF1-206ENST00000583741 ANKRD36BQ8N2N9 1353 aa28.78■■■□□ 2.2
SRSF1-206ENST00000583741 PNPLA7Q6ZV29 1317 aa28.78■■■□□ 2.2
SRSF1-206ENST00000583741 SYTL4Q96C24 671 aaPredicted RBP28.78■■■□□ 2.2
SRSF1-206ENST00000583741 PRIM1P49642 420 aaKnown RBP28.77■■■□□ 2.2
SRSF1-206ENST00000583741 AMPHP49418 695 aa28.76■■■□□ 2.19
SRSF1-206ENST00000583741 ZEB1P37275 1124 aaPredicted RBP28.73■■■□□ 2.19
SRSF1-206ENST00000583741 SLC16A10Q8TF71 515 aa28.73■■■□□ 2.19
SRSF1-206ENST00000583741 ZCRB1Q8TBF4 217 aaKnown RBP28.72■■■□□ 2.19
SRSF1-206ENST00000583741 TFCP2L1Q9NZI6 479 aa28.72■■■□□ 2.19
SRSF1-206ENST00000583741 RTL1A6NKG5 1358 aa28.72■■■□□ 2.19
SRSF1-206ENST00000583741 RRS1Q15050 365 aaKnown RBP28.71■■■□□ 2.19
SRSF1-206ENST00000583741 KLHL34Q8N239 644 aa28.7■■■□□ 2.18
SRSF1-206ENST00000583741 POLD1P28340 1107 aa28.69■■■□□ 2.18
SRSF1-206ENST00000583741 NBPF6Q5VWK0 638 aa28.69■■■□□ 2.18
SRSF1-206ENST00000583741 NBPF4Q96M43 638 aa28.69■■■□□ 2.18
SRSF1-206ENST00000583741 GPR162Q16538 588 aa28.67■■■□□ 2.18
SRSF1-206ENST00000583741 USHBP1Q8N6Y0 703 aa28.67■■■□□ 2.18
SRSF1-206ENST00000583741 FYB1O15117 783 aa28.66■■■□□ 2.18
SRSF1-206ENST00000583741 GGNBP2Q9H3C7 697 aa28.66■■■□□ 2.18
SRSF1-206ENST00000583741 CCNL1Q9UK58 526 aaPredicted RBP28.66■■■□□ 2.18
SRSF1-206ENST00000583741 KIF20BQ96Q89 1820 aa28.66■■■□□ 2.18
SRSF1-206ENST00000583741 SLC24A1O60721 1099 aa28.64■■■□□ 2.17
SRSF1-206ENST00000583741 NLGN2Q8NFZ4 835 aa28.64■■■□□ 2.17
SRSF1-206ENST00000583741 USP47Q96K76 1375 aa28.63■■■□□ 2.17
SRSF1-206ENST00000583741 C5P01031 1676 aa28.63■■■□□ 2.17
SRSF1-206ENST00000583741 SMG6Q86US8 1419 aaKnown RBP28.62■■■□□ 2.17
SRSF1-206ENST00000583741 CGNL1Q0VF96 1302 aa28.61■■■□□ 2.17
SRSF1-206ENST00000583741 TAF1LQ8IZX4 1826 aa28.59■■■□□ 2.17
SRSF1-206ENST00000583741 PELP1Q8IZL8 1130 aaKnown RBP28.59■■■□□ 2.17
SRSF1-206ENST00000583741 RAPGEF4Q8WZA2 1011 aa28.59■■■□□ 2.17
SRSF1-206ENST00000583741 TMF1P82094 1093 aa28.59■■■□□ 2.17
SRSF1-206ENST00000583741 HSP90AB2PQ58FF8 381 aa28.59■■■□□ 2.17
SRSF1-206ENST00000583741 COL23A1Q86Y22 540 aaPredicted RBP28.59■■■□□ 2.17
SRSF1-206ENST00000583741 TOGARAM1Q9Y4F4 1720 aa28.58■■■□□ 2.17
SRSF1-206ENST00000583741 INSRP06213 1382 aa28.57■■■□□ 2.16
SRSF1-206ENST00000583741 MSH5O43196 834 aa28.56■■■□□ 2.16
SRSF1-206ENST00000583741 C1QTNF8P60827 252 aa28.56■■■□□ 2.16
SRSF1-206ENST00000583741 FLT4P35916 1363 aa28.56■■■□□ 2.16
SRSF1-206ENST00000583741 TATP17735 454 aaPredicted RBP28.55■■■□□ 2.16
SRSF1-206ENST00000583741 PCDH11XQ9BZA7 1347 aa28.55■■■□□ 2.16
SRSF1-206ENST00000583741 PCDH11YQ9BZA8 1340 aa28.55■■■□□ 2.16
SRSF1-206ENST00000583741 ITGB4P16144 1822 aa28.55■■■□□ 2.16
SRSF1-206ENST00000583741 MSL1Q68DK7 614 aa28.53■■■□□ 2.16
SRSF1-206ENST00000583741 PKD1L3Q7Z443 1732 aa28.53■■■□□ 2.16
SRSF1-206ENST00000583741 SENP3-EIF4A1A0A087X0R7 540 aa28.53■■■□□ 2.16
SRSF1-206ENST00000583741 KIF24Q5T7B8 1368 aa28.52■■■□□ 2.16
SRSF1-206ENST00000583741 PALLDQ8WX93 1383 aa28.52■■■□□ 2.16
SRSF1-206ENST00000583741 YBX3P16989 372 aaKnown RBP eCLIP28.52■■■□□ 2.16
SRSF1-206ENST00000583741 CYP27B1O15528 508 aa28.51■■■□□ 2.15
SRSF1-206ENST00000583741 C4BP0C0L5 1744 aa28.5■■■□□ 2.15
SRSF1-206ENST00000583741 MPRIPQ6WCQ1 1025 aa28.49■■■□□ 2.15
SRSF1-206ENST00000583741 ANKRD26Q9UPS8 1709 aa28.49■■■□□ 2.15
SRSF1-206ENST00000583741 CARD14Q9BXL6 1004 aa28.48■■■□□ 2.15
SRSF1-206ENST00000583741 EMILIN1Q9Y6C2 1016 aa28.48■■■□□ 2.15
SRSF1-206ENST00000583741 CEP350Q5VT06 3117 aa28.48■■■□□ 2.15
SRSF1-206ENST00000583741 NCAPD2Q15021 1401 aa28.46■■■□□ 2.15
SRSF1-206ENST00000583741 NSD3Q9BZ95 1437 aa28.46■■■□□ 2.15
SRSF1-206ENST00000583741 UBR3Q6ZT12 1888 aa28.46■■■□□ 2.15
SRSF1-206ENST00000583741 TIMELESSQ9UNS1 1208 aa28.45■■■□□ 2.14
SRSF1-206ENST00000583741 GIGYF1O75420 1035 aaPredicted RBP28.44■■■□□ 2.14
SRSF1-206ENST00000583741 CDCA8Q53HL2 280 aa28.44■■■□□ 2.14
SRSF1-206ENST00000583741 AMIGO3Q86WK7 504 aa28.44■■■□□ 2.14
SRSF1-206ENST00000583741 MAP2P11137 1827 aaKnown RBP28.43■■■□□ 2.14
SRSF1-206ENST00000583741 GRIN3BO60391 1043 aa28.42■■■□□ 2.14
SRSF1-206ENST00000583741 FLAD1Q8NFF5 587 aa28.4■■■□□ 2.14
SRSF1-206ENST00000583741 PIGBQ92521 554 aa28.4■■■□□ 2.14
SRSF1-206ENST00000583741 SMIM5Q71RC9 77 aa28.39■■■□□ 2.13
SRSF1-206ENST00000583741 SMARCC1Q92922 1105 aaPredicted RBP28.39■■■□□ 2.13
SRSF1-206ENST00000583741 CD2APQ9Y5K6 639 aa28.39■■■□□ 2.13
SRSF1-206ENST00000583741 PPM1GO15355 546 aaPredicted RBP28.38■■■□□ 2.13
SRSF1-206ENST00000583741 AK7Q96M32 723 aa28.38■■■□□ 2.13
SRSF1-206ENST00000583741 NKX1-1Q15270 411 aaPredicted RBP28.37■■■□□ 2.13
SRSF1-206ENST00000583741 HMGB2P26583 209 aaKnown RBP28.36■■■□□ 2.13
SRSF1-206ENST00000583741 PHF14O94880 888 aa28.35■■■□□ 2.13
SRSF1-206ENST00000583741 ATP10DQ9P241 1426 aa28.35■■■□□ 2.13
SRSF1-206ENST00000583741 WASHC2AQ641Q2 1341 aa28.34■■■□□ 2.13
SRSF1-206ENST00000583741 EYA1Q99502 592 aa28.34■■■□□ 2.13
SRSF1-206ENST00000583741 SPG7Q9UQ90 795 aa28.34■■■□□ 2.13
SRSF1-206ENST00000583741 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.33■■■□□ 2.13
SRSF1-206ENST00000583741 LINC00116Q8NCU8 138 aa28.32■■■□□ 2.12
SRSF1-206ENST00000583741 LOC102724428A0A0B4J2F2 783 aa28.31■■■□□ 2.12
SRSF1-206ENST00000583741 SIK1P57059 783 aa28.31■■■□□ 2.12
SRSF1-206ENST00000583741 ADCY9O60503 1353 aa28.29■■■□□ 2.12
SRSF1-206ENST00000583741 SSFA2P28290 1259 aa28.28■■■□□ 2.12
SRSF1-206ENST00000583741 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.28■■■□□ 2.123e-19■■■□□ 14.9
SRSF1-206ENST00000583741 TMOD3Q9NYL9 352 aa28.28■■■□□ 2.12
SRSF1-206ENST00000583741 POLKQ9UBT6 870 aa28.28■■■□□ 2.12
SRSF1-206ENST00000583741 ASAP1Q9ULH1 1129 aa28.28■■■□□ 2.12
SRSF1-206ENST00000583741 ITPK1Q13572 414 aa28.27■■■□□ 2.12
SRSF1-206ENST00000583741 WWC3Q9ULE0 1092 aa28.27■■■□□ 2.12
SRSF1-206ENST00000583741 PHKG2P15735 406 aa28.27■■■□□ 2.12
SRSF1-206ENST00000583741 IGSF1Q8N6C5 1336 aa28.26■■■□□ 2.12
SRSF1-206ENST00000583741 GNPATO15228 680 aa28.24■■■□□ 2.11
SRSF1-206ENST00000583741 IFNL2Q8IZJ0 200 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms