RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 VWA5B2Q8N398 1253 aa9.71□□□□□ -0.86
SMCHD1-208ENST00000583344 NANOS1Q8WY41 292 aaKnown RBP9.71□□□□□ -0.86
SMCHD1-208ENST00000583344 COL25A1Q9BXS0 654 aaPredicted RBP9.71□□□□□ -0.86
SMCHD1-208ENST00000583344 RHOQP17081 205 aa9.7□□□□□ -0.86
SMCHD1-208ENST00000583344 RNFT1Q5M7Z0 435 aa9.7□□□□□ -0.86
SMCHD1-208ENST00000583344 RNF20Q5VTR2 975 aa9.7□□□□□ -0.86
SMCHD1-208ENST00000583344 PRICKLE2Q7Z3G6 844 aa9.7□□□□□ -0.86
SMCHD1-208ENST00000583344 ZNF330Q9Y3S2 320 aaPredicted RBP9.7□□□□□ -0.86
SMCHD1-208ENST00000583344 A0A1W2PRU2 124 aa9.68□□□□□ -0.86
SMCHD1-208ENST00000583344 PRKCSHP14314 528 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-208ENST00000583344 RNF144AP50876 292 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-208ENST00000583344 MCCD1P59942 119 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-208ENST00000583344 SV2AQ7L0J3 742 aa9.67□□□□□ -0.86
SMCHD1-208ENST00000583344 CCDC125Q86Z20 511 aa9.67□□□□□ -0.86
SMCHD1-208ENST00000583344 TRIM52Q96A61 297 aa9.67□□□□□ -0.86
SMCHD1-208ENST00000583344 OSBPL3Q9H4L5 887 aa9.67□□□□□ -0.86
SMCHD1-208ENST00000583344 CUEDC1Q9NWM3 386 aaPredicted RBP9.67□□□□□ -0.86
SMCHD1-208ENST00000583344 CYP2U1Q7Z449 544 aa9.66□□□□□ -0.86
SMCHD1-208ENST00000583344 ZNF592Q92610 1267 aa9.66□□□□□ -0.86
SMCHD1-208ENST00000583344 ARHGEF10LQ9HCE6 1279 aa9.66□□□□□ -0.86
SMCHD1-208ENST00000583344 IRF5Q13568 498 aa9.65□□□□□ -0.86
SMCHD1-208ENST00000583344 CCDC85AQ96PX6 553 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-208ENST00000583344 CEP126Q9P2H0 1117 aa9.65□□□□□ -0.86
SMCHD1-208ENST00000583344 TRAK2O60296 914 aa9.64□□□□□ -0.87
SMCHD1-208ENST00000583344 CDCA7Q9BWT1 371 aaPredicted RBP9.64□□□□□ -0.87
SMCHD1-208ENST00000583344 RAB6BQ9NRW1 208 aa9.64□□□□□ -0.87
SMCHD1-208ENST00000583344 GPC1P35052 558 aa9.63□□□□□ -0.87
SMCHD1-208ENST00000583344 CLN3Q13286 438 aa9.63□□□□□ -0.87
SMCHD1-208ENST00000583344 NLRP3Q96P20 1036 aa9.63□□□□□ -0.87
SMCHD1-208ENST00000583344 SLC27A3Q5K4L6 730 aa9.62□□□□□ -0.87
SMCHD1-208ENST00000583344 POU4F2Q12837 409 aa9.61□□□□□ -0.87
SMCHD1-208ENST00000583344 ESF1Q9H501 851 aaKnown RBP9.61□□□□□ -0.87
SMCHD1-208ENST00000583344 GDPD2Q9HCC8 539 aa9.61□□□□□ -0.87
SMCHD1-208ENST00000583344 VAC14Q08AM6 782 aa9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 TSGA10IPQ3SY00 556 aa9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 WHAMMQ8TF30 809 aa9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 ZNF837Q96EG3 531 aaPredicted RBP9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 GRIP2Q9C0E4 1043 aa9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 PRM3Q9NNZ6 103 aa9.6□□□□□ -0.87
SMCHD1-208ENST00000583344 ABL2P42684 1182 aa9.59□□□□□ -0.87
SMCHD1-208ENST00000583344 EIF4G2P78344 907 aaKnown RBP eCLIP9.59□□□□□ -0.87
SMCHD1-208ENST00000583344 ZNF385CQ66K41 422 aaPredicted RBP9.59□□□□□ -0.87
SMCHD1-208ENST00000583344 RIPOR1Q6ZS17 1223 aa9.59□□□□□ -0.87
SMCHD1-208ENST00000583344 MYCP01106 439 aaPredicted RBP9.58□□□□□ -0.88
SMCHD1-208ENST00000583344 IL2RAP01589 272 aa9.58□□□□□ -0.88
SMCHD1-208ENST00000583344 GAS6Q14393 721 aa9.58□□□□□ -0.88
SMCHD1-208ENST00000583344 NBPF10Q6P3W6 841 aaKnown RBP9.58□□□□□ -0.88
SMCHD1-208ENST00000583344 NBPF15Q8N660 670 aa9.58□□□□□ -0.88
SMCHD1-208ENST00000583344 GPR25O00155 361 aa9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 SLURP2P0DP57 97 aa9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 PHTF2Q8N3S3 785 aa9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 SVOPQ8N4V2 548 aa9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 GAS2L1Q99501 681 aaPredicted RBP9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 DOLKQ9UPQ8 538 aa9.57□□□□□ -0.88
SMCHD1-208ENST00000583344 GNRH1P01148 92 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 MCM6Q14566 821 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 DBN1Q16643 649 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 TRIM22Q8IYM9 498 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 CNKSR1Q969H4 720 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 DYRK1BQ9Y463 629 aa9.56□□□□□ -0.88
SMCHD1-208ENST00000583344 SPATA31C2B4DYI2 1134 aa9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 ADAMTS2O95450 1211 aa9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 STAU1O95793 577 aaKnown RBP9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 SLFNL1Q499Z3 407 aa9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 RNF135Q8IUD6 432 aa9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 ESYT1Q9BSJ8 1104 aa9.55□□□□□ -0.88
SMCHD1-208ENST00000583344 WASLO00401 505 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 CENPCQ03188 943 aa9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 OXLD1Q5BKU9 147 aa9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 TAS1R3Q7RTX0 852 aa9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 TIMMDC1Q9NPL8 285 aa9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 ADAMTS8Q9UP79 889 aa9.54□□□□□ -0.88
SMCHD1-208ENST00000583344 GTPBP3Q969Y2 492 aaKnown RBP9.53□□□□□ -0.88
SMCHD1-208ENST00000583344 HRH3Q9Y5N1 445 aa9.52□□□□□ -0.89
SMCHD1-208ENST00000583344 PHKA2P46019 1235 aa9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 GSK3AP49840 483 aa9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 SRSF11Q05519 484 aaKnown RBP9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 LYPD4Q6UWN0 246 aa9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 XAGE2Q96GT9 111 aa9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 GMCL1Q96IK5 515 aa9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 ZSCAN10Q96SZ4 725 aaPredicted RBP9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 FHDC1Q9C0D6 1143 aaPredicted RBP9.51□□□□□ -0.89
SMCHD1-208ENST00000583344 ARHGEF15O94989 841 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 USP4Q13107 963 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 WDR44Q5JSH3 913 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 ETNK1Q9HBU6 452 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 GPAMQ9HCL2 828 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 CHIC2Q9UKJ5 165 aa9.5□□□□□ -0.89
SMCHD1-208ENST00000583344 H7C1W4 665 aa9.49□□□□□ -0.89
SMCHD1-208ENST00000583344 KCNMA1Q12791 1236 aa9.49□□□□□ -0.89
SMCHD1-208ENST00000583344 WASHC4Q2M389 1173 aa9.49□□□□□ -0.89
SMCHD1-208ENST00000583344 FOXR1Q6PIV2 292 aa9.49□□□□□ -0.89
SMCHD1-208ENST00000583344 MBIPQ9NS73 344 aa9.49□□□□□ -0.89
SMCHD1-208ENST00000583344 F11P03951 625 aa9.48□□□□□ -0.89
SMCHD1-208ENST00000583344 THBS1P07996 1170 aa9.48□□□□□ -0.89
SMCHD1-208ENST00000583344 ESCO1Q5FWF5 840 aa9.48□□□□□ -0.89
SMCHD1-208ENST00000583344 NUCKS1Q9H1E3 243 aaKnown RBP9.48□□□□□ -0.89
SMCHD1-208ENST00000583344 COG6Q9Y2V7 657 aa9.48□□□□□ -0.89
SMCHD1-208ENST00000583344 CELA2BP08218 269 aaPredicted RBP9.47□□□□□ -0.89
SMCHD1-208ENST00000583344 SEMA3FQ13275 785 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms