RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 COL23A1Q86Y22 540 aaPredicted RBP17.43■□□□□ 0.38
TOP3A-215ENST00000583328 MON2Q7Z3U7 1717 aa17.41■□□□□ 0.38
TOP3A-215ENST00000583328 MSL1Q68DK7 614 aa17.41■□□□□ 0.38
TOP3A-215ENST00000583328 COG3Q96JB2 828 aa17.41■□□□□ 0.38
TOP3A-215ENST00000583328 HOXC9P31274 260 aa17.4■□□□□ 0.38
TOP3A-215ENST00000583328 MAP3K19Q56UN5 1328 aa17.4■□□□□ 0.38
TOP3A-215ENST00000583328 A0A1W2PP64 1363 aa17.4■□□□□ 0.38
TOP3A-215ENST00000583328 NSD2O96028 1365 aa17.4■□□□□ 0.38
TOP3A-215ENST00000583328 USP47Q96K76 1375 aa17.4■□□□□ 0.38
TOP3A-215ENST00000583328 FBLN1P23142 703 aa17.39■□□□□ 0.37
TOP3A-215ENST00000583328 PUS7Q96PZ0 661 aaKnown RBP17.39■□□□□ 0.37
TOP3A-215ENST00000583328 LTN1O94822 1766 aa17.38■□□□□ 0.37
TOP3A-215ENST00000583328 USP54Q70EL1 1684 aa17.38■□□□□ 0.37
TOP3A-215ENST00000583328 GPBP1L1Q9HC44 474 aaPredicted RBP17.37■□□□□ 0.37
TOP3A-215ENST00000583328 CD2APQ9Y5K6 639 aa17.37■□□□□ 0.37
TOP3A-215ENST00000583328 HMGB2P26583 209 aaKnown RBP17.36■□□□□ 0.37
TOP3A-215ENST00000583328 FLAD1Q8NFF5 587 aa17.36■□□□□ 0.37
TOP3A-215ENST00000583328 ATP10DQ9P241 1426 aa17.36■□□□□ 0.37
TOP3A-215ENST00000583328 QSER1Q2KHR3 1735 aa17.35■□□□□ 0.37
TOP3A-215ENST00000583328 SHANK3Q9BYB0 1731 aa17.35■□□□□ 0.37
TOP3A-215ENST00000583328 NBPF6Q5VWK0 638 aa17.35■□□□□ 0.37
TOP3A-215ENST00000583328 RAPGEF4Q8WZA2 1011 aa17.35■□□□□ 0.37
TOP3A-215ENST00000583328 NBPF4Q96M43 638 aa17.35■□□□□ 0.37
TOP3A-215ENST00000583328 USHBP1Q8N6Y0 703 aa17.34■□□□□ 0.37
TOP3A-215ENST00000583328 COL24A1Q17RW2 1714 aa17.33■□□□□ 0.37
TOP3A-215ENST00000583328 MEGF6O75095 1541 aa17.33■□□□□ 0.37
TOP3A-215ENST00000583328 CGNL1Q0VF96 1302 aa17.33■□□□□ 0.36
TOP3A-215ENST00000583328 TATP17735 454 aaPredicted RBP17.33■□□□□ 0.36
TOP3A-215ENST00000583328 RRS1Q15050 365 aaKnown RBP17.33■□□□□ 0.36
TOP3A-215ENST00000583328 ZNF526Q8TF50 670 aaPredicted RBP17.33■□□□□ 0.36
TOP3A-215ENST00000583328 HSPA6P17066 643 aa17.31■□□□□ 0.36
TOP3A-215ENST00000583328 MPRIPQ6WCQ1 1025 aa17.31■□□□□ 0.36
TOP3A-215ENST00000583328 AK7Q96M32 723 aa17.3■□□□□ 0.36
TOP3A-215ENST00000583328 TUBGCP6Q96RT7 1819 aa17.3■□□□□ 0.36
TOP3A-215ENST00000583328 DOT1LQ8TEK3 1739 aa17.3■□□□□ 0.36
TOP3A-215ENST00000583328 PALLDQ8WX93 1383 aa17.29■□□□□ 0.36
TOP3A-215ENST00000583328 WWC3Q9ULE0 1092 aa17.29■□□□□ 0.36
TOP3A-215ENST00000583328 LY75O60449 1722 aa17.29■□□□□ 0.36
TOP3A-215ENST00000583328 FAM208AQ9UK61 1670 aaKnown RBP17.29■□□□□ 0.36
TOP3A-215ENST00000583328 RTL1A6NKG5 1358 aa17.28■□□□□ 0.36
TOP3A-215ENST00000583328 PCDH11XQ9BZA7 1347 aa17.28■□□□□ 0.36
TOP3A-215ENST00000583328 PCDH11YQ9BZA8 1340 aa17.28■□□□□ 0.36
TOP3A-215ENST00000583328 SLC24A1O60721 1099 aa17.28■□□□□ 0.36
TOP3A-215ENST00000583328 SMARCC1Q92922 1105 aaPredicted RBP17.28■□□□□ 0.36
TOP3A-215ENST00000583328 GGNBP2Q9H3C7 697 aa17.28■□□□□ 0.36
TOP3A-215ENST00000583328 IGSF1Q8N6C5 1336 aa17.27■□□□□ 0.36
TOP3A-215ENST00000583328 ST20-MTHFSA0A0A6YYL1 179 aa17.27■□□□□ 0.36
TOP3A-215ENST00000583328 PHF14O94880 888 aa17.27■□□□□ 0.36
TOP3A-215ENST00000583328 GOLGB1Q14789 3259 aaKnown RBP17.27■□□□□ 0.36
TOP3A-215ENST00000583328 SMG6Q86US8 1419 aaKnown RBP17.27■□□□□ 0.35
TOP3A-215ENST00000583328 FYB1O15117 783 aa17.26■□□□□ 0.35
TOP3A-215ENST00000583328 TESK2Q96S53 571 aa17.26■□□□□ 0.35
TOP3A-215ENST00000583328 ADCY9O60503 1353 aa17.26■□□□□ 0.35
TOP3A-215ENST00000583328 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.25■□□□□ 0.35
TOP3A-215ENST00000583328 HSP90AB2PQ58FF8 381 aa17.25■□□□□ 0.35
TOP3A-215ENST00000583328 SMIM5Q71RC9 77 aa17.25■□□□□ 0.35
TOP3A-215ENST00000583328 CYP27B1O15528 508 aa17.24■□□□□ 0.35
TOP3A-215ENST00000583328 TONSLQ96HA7 1378 aa17.24■□□□□ 0.35
TOP3A-215ENST00000583328 AMIGO3Q86WK7 504 aa17.23■□□□□ 0.35
TOP3A-215ENST00000583328 PIGBQ92521 554 aa17.23■□□□□ 0.35
TOP3A-215ENST00000583328 CEP350Q5VT06 3117 aa17.23■□□□□ 0.35
TOP3A-215ENST00000583328 INSRP06213 1382 aa17.22■□□□□ 0.35
TOP3A-215ENST00000583328 RGPD2P0DJD1 1756 aa17.21■□□□□ 0.35
TOP3A-215ENST00000583328 KIF3CO14782 793 aa17.21■□□□□ 0.35
TOP3A-215ENST00000583328 SSFA2P28290 1259 aa17.21■□□□□ 0.35
TOP3A-215ENST00000583328 NSD3Q9BZ95 1437 aa17.21■□□□□ 0.34
TOP3A-215ENST00000583328 LOC102724428A0A0B4J2F2 783 aa17.2■□□□□ 0.34
TOP3A-215ENST00000583328 SIK1P57059 783 aa17.2■□□□□ 0.34
TOP3A-215ENST00000583328 TRIM26Q12899 539 aaPredicted RBP17.2■□□□□ 0.34
TOP3A-215ENST00000583328 FLT4P35916 1363 aa17.19■□□□□ 0.34
TOP3A-215ENST00000583328 LINC00116Q8NCU8 138 aa17.19■□□□□ 0.34
TOP3A-215ENST00000583328 C5P01031 1676 aa17.18■□□□□ 0.34
TOP3A-215ENST00000583328 TMF1P82094 1093 aa17.18■□□□□ 0.34
TOP3A-215ENST00000583328 SPG7Q9UQ90 795 aa17.18■□□□□ 0.34
TOP3A-215ENST00000583328 GNPATO15228 680 aa17.17■□□□□ 0.34
TOP3A-215ENST00000583328 APLP1P51693 650 aa17.17■□□□□ 0.34
TOP3A-215ENST00000583328 NKX1-1Q15270 411 aaPredicted RBP17.17■□□□□ 0.34
TOP3A-215ENST00000583328 TMOD3Q9NYL9 352 aa17.17■□□□□ 0.34
TOP3A-215ENST00000583328 KIF24Q5T7B8 1368 aa17.16■□□□□ 0.34
TOP3A-215ENST00000583328 MMP10P09238 476 aa17.16■□□□□ 0.34
TOP3A-215ENST00000583328 ATP6V1AP38606 617 aa17.16■□□□□ 0.34
TOP3A-215ENST00000583328 C4BP0C0L5 1744 aa17.16■□□□□ 0.34
TOP3A-215ENST00000583328 PPM1GO15355 546 aaPredicted RBP17.15■□□□□ 0.34
TOP3A-215ENST00000583328 ITPK1Q13572 414 aa17.15■□□□□ 0.34
TOP3A-215ENST00000583328 ASAP1Q9ULH1 1129 aa17.15■□□□□ 0.34
TOP3A-215ENST00000583328 BCS1LQ9Y276 419 aa17.15■□□□□ 0.34
TOP3A-215ENST00000583328 EMILIN1Q9Y6C2 1016 aa17.15■□□□□ 0.34
TOP3A-215ENST00000583328 TOMM70O94826 608 aa17.13■□□□□ 0.33
TOP3A-215ENST00000583328 TGFB2P61812 414 aa17.13■□□□□ 0.33
TOP3A-215ENST00000583328 ARHGAP27Q6ZUM4 889 aa17.13■□□□□ 0.33
TOP3A-215ENST00000583328 A0A0G2JLW4 131 aa17.12■□□□□ 0.33
TOP3A-215ENST00000583328 CDCA8Q53HL2 280 aa17.12■□□□□ 0.33
TOP3A-215ENST00000583328 TRAPPC3LQ5T215 181 aa17.12■□□□□ 0.33
TOP3A-215ENST00000583328 TAF1LQ8IZX4 1826 aa17.12■□□□□ 0.33
TOP3A-215ENST00000583328 IFNL2Q8IZJ0 200 aa17.11■□□□□ 0.33
TOP3A-215ENST00000583328 NLGN1Q8N2Q7 840 aa17.11■□□□□ 0.33
TOP3A-215ENST00000583328 EYA1Q99502 592 aa17.11■□□□□ 0.33
TOP3A-215ENST00000583328 ATG3Q9NT62 314 aa17.11■□□□□ 0.33
TOP3A-215ENST00000583328 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.11■□□□□ 0.33
TOP3A-215ENST00000583328 RTCBQ9Y3I0 505 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms