RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 SYTL4Q96C24 671 aaPredicted RBP19.13■□□□□ 0.65
SS18-222ENST00000582792 TUBGCP6Q96RT7 1819 aa19.13■□□□□ 0.65
SS18-222ENST00000582792 RGPD2P0DJD1 1756 aa19.12■□□□□ 0.65
SS18-222ENST00000582792 NSD2O96028 1365 aa19.12■□□□□ 0.65
SS18-222ENST00000582792 POLD1P28340 1107 aa19.12■□□□□ 0.65
SS18-222ENST00000582792 AMPHP49418 695 aa19.12■□□□□ 0.65
SS18-222ENST00000582792 KCNQ4P56696 695 aa19.11■□□□□ 0.65
SS18-222ENST00000582792 ZCRB1Q8TBF4 217 aaKnown RBP19.11■□□□□ 0.65
SS18-222ENST00000582792 TFCP2L1Q9NZI6 479 aa19.11■□□□□ 0.65
SS18-222ENST00000582792 MEGF6O75095 1541 aa19.1■□□□□ 0.65
SS18-222ENST00000582792 ST20-MTHFSA0A0A6YYL1 179 aa19.1■□□□□ 0.65
SS18-222ENST00000582792 SLC24A1O60721 1099 aa19.1■□□□□ 0.65
SS18-222ENST00000582792 FBLN1P23142 703 aa19.1■□□□□ 0.65
SS18-222ENST00000582792 GPR162Q16538 588 aa19.1■□□□□ 0.65
SS18-222ENST00000582792 RTL1A6NKG5 1358 aa19.09■□□□□ 0.65
SS18-222ENST00000582792 KLHL34Q8N239 644 aa19.09■□□□□ 0.65
SS18-222ENST00000582792 C1QTNF8P60827 252 aa19.06■□□□□ 0.64
SS18-222ENST00000582792 NBPF6Q5VWK0 638 aa19.06■□□□□ 0.64
SS18-222ENST00000582792 NBPF4Q96M43 638 aa19.06■□□□□ 0.64
SS18-222ENST00000582792 CCNL1Q9UK58 526 aaPredicted RBP19.06■□□□□ 0.64
SS18-222ENST00000582792 CGNL1Q0VF96 1302 aa19.05■□□□□ 0.64
SS18-222ENST00000582792 USP47Q96K76 1375 aa19.05■□□□□ 0.64
SS18-222ENST00000582792 RRS1Q15050 365 aaKnown RBP19.04■□□□□ 0.64
SS18-222ENST00000582792 NLGN2Q8NFZ4 835 aa19.04■□□□□ 0.64
SS18-222ENST00000582792 SMG6Q86US8 1419 aaKnown RBP19.03■□□□□ 0.64
SS18-222ENST00000582792 SENP3-EIF4A1A0A087X0R7 540 aa19.03■□□□□ 0.64
SS18-222ENST00000582792 FYB1O15117 783 aa19.03■□□□□ 0.64
SS18-222ENST00000582792 PELP1Q8IZL8 1130 aaKnown RBP19.03■□□□□ 0.64
SS18-222ENST00000582792 COL23A1Q86Y22 540 aaPredicted RBP19.02■□□□□ 0.64
SS18-222ENST00000582792 USHBP1Q8N6Y0 703 aa19.02■□□□□ 0.64
SS18-222ENST00000582792 RAPGEF4Q8WZA2 1011 aa19.02■□□□□ 0.64
SS18-222ENST00000582792 GGNBP2Q9H3C7 697 aa19.02■□□□□ 0.64
SS18-222ENST00000582792 MSH5O43196 834 aa19■□□□□ 0.63
SS18-222ENST00000582792 TATP17735 454 aaPredicted RBP19■□□□□ 0.63
SS18-222ENST00000582792 TMF1P82094 1093 aa19■□□□□ 0.63
SS18-222ENST00000582792 C5P01031 1676 aa19■□□□□ 0.63
SS18-222ENST00000582792 INSRP06213 1382 aa18.99■□□□□ 0.63
SS18-222ENST00000582792 PCDH11XQ9BZA7 1347 aa18.99■□□□□ 0.63
SS18-222ENST00000582792 PCDH11YQ9BZA8 1340 aa18.99■□□□□ 0.63
SS18-222ENST00000582792 KIF20BQ96Q89 1820 aa18.98■□□□□ 0.63
SS18-222ENST00000582792 KIF24Q5T7B8 1368 aa18.98■□□□□ 0.63
SS18-222ENST00000582792 HSP90AB2PQ58FF8 381 aa18.98■□□□□ 0.63
SS18-222ENST00000582792 CEP350Q5VT06 3117 aa18.98■□□□□ 0.63
SS18-222ENST00000582792 FLT4P35916 1363 aa18.97■□□□□ 0.63
SS18-222ENST00000582792 GRIN3BO60391 1043 aa18.97■□□□□ 0.63
SS18-222ENST00000582792 GIGYF1O75420 1035 aaPredicted RBP18.97■□□□□ 0.63
SS18-222ENST00000582792 YBX3P16989 372 aaKnown RBP eCLIP18.97■□□□□ 0.63
SS18-222ENST00000582792 HMGB2P26583 209 aaKnown RBP18.97■□□□□ 0.63
SS18-222ENST00000582792 TAF1LQ8IZX4 1826 aa18.97■□□□□ 0.63
SS18-222ENST00000582792 MSL1Q68DK7 614 aa18.96■□□□□ 0.63
SS18-222ENST00000582792 PCGF6Q9BYE7 350 aa18.96■□□□□ 0.63
SS18-222ENST00000582792 PALLDQ8WX93 1383 aa18.95■□□□□ 0.62
SS18-222ENST00000582792 FLAD1Q8NFF5 587 aa18.95■□□□□ 0.62
SS18-222ENST00000582792 CYP27B1O15528 508 aa18.94■□□□□ 0.62
SS18-222ENST00000582792 TOGARAM1Q9Y4F4 1720 aa18.94■□□□□ 0.62
SS18-222ENST00000582792 CDCA8Q53HL2 280 aa18.93■□□□□ 0.62
SS18-222ENST00000582792 MPRIPQ6WCQ1 1025 aa18.93■□□□□ 0.62
SS18-222ENST00000582792 PKD1L3Q7Z443 1732 aa18.93■□□□□ 0.62
SS18-222ENST00000582792 ITGB4P16144 1822 aa18.93■□□□□ 0.62
SS18-222ENST00000582792 C4BP0C0L5 1744 aa18.92■□□□□ 0.62
SS18-222ENST00000582792 CD2APQ9Y5K6 639 aa18.92■□□□□ 0.62
SS18-222ENST00000582792 SMARCC1Q92922 1105 aaPredicted RBP18.91■□□□□ 0.62
SS18-222ENST00000582792 NCAPD2Q15021 1401 aa18.91■□□□□ 0.62
SS18-222ENST00000582792 AK7Q96M32 723 aa18.89■□□□□ 0.61
SS18-222ENST00000582792 CARD14Q9BXL6 1004 aa18.89■□□□□ 0.61
SS18-222ENST00000582792 EMILIN1Q9Y6C2 1016 aa18.89■□□□□ 0.61
SS18-222ENST00000582792 NKX1-1Q15270 411 aaPredicted RBP18.88■□□□□ 0.61
SS18-222ENST00000582792 NSD3Q9BZ95 1437 aa18.88■□□□□ 0.61
SS18-222ENST00000582792 ANKRD26Q9UPS8 1709 aa18.88■□□□□ 0.61
SS18-222ENST00000582792 UBR3Q6ZT12 1888 aa18.88■□□□□ 0.61
SS18-222ENST00000582792 AMIGO3Q86WK7 504 aa18.87■□□□□ 0.61
SS18-222ENST00000582792 PIGBQ92521 554 aa18.87■□□□□ 0.61
SS18-222ENST00000582792 ATP10DQ9P241 1426 aa18.87■□□□□ 0.61
SS18-222ENST00000582792 MAP2P11137 1827 aaKnown RBP18.86■□□□□ 0.61
SS18-222ENST00000582792 SPG7Q9UQ90 795 aa18.86■□□□□ 0.61
SS18-222ENST00000582792 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.84■□□□□ 0.61
SS18-222ENST00000582792 PPM1GO15355 546 aaPredicted RBP18.84■□□□□ 0.61
SS18-222ENST00000582792 PHF14O94880 888 aa18.84■□□□□ 0.61
SS18-222ENST00000582792 SSFA2P28290 1259 aa18.84■□□□□ 0.61
SS18-222ENST00000582792 ADCY9O60503 1353 aa18.83■□□□□ 0.61
SS18-222ENST00000582792 WASHC2AQ641Q2 1341 aa18.83■□□□□ 0.61
SS18-222ENST00000582792 LOC102724428A0A0B4J2F2 783 aa18.83■□□□□ 0.6
SS18-222ENST00000582792 SIK1P57059 783 aa18.83■□□□□ 0.6
SS18-222ENST00000582792 SMIM5Q71RC9 77 aa18.83■□□□□ 0.6
SS18-222ENST00000582792 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.83■□□□□ 0.67e-7■■■□□ 14.8
SS18-222ENST00000582792 LINC00116Q8NCU8 138 aa18.82■□□□□ 0.6
SS18-222ENST00000582792 EYA1Q99502 592 aa18.82■□□□□ 0.6
SS18-222ENST00000582792 IGSF1Q8N6C5 1336 aa18.81■□□□□ 0.6
SS18-222ENST00000582792 TMOD3Q9NYL9 352 aa18.81■□□□□ 0.6
SS18-222ENST00000582792 GPBP1L1Q9HC44 474 aaPredicted RBP18.8■□□□□ 0.6
SS18-222ENST00000582792 ASAP1Q9ULH1 1129 aa18.8■□□□□ 0.6
SS18-222ENST00000582792 PHKG2P15735 406 aa18.79■□□□□ 0.6
SS18-222ENST00000582792 ITPK1Q13572 414 aa18.79■□□□□ 0.6
SS18-222ENST00000582792 IFNL2Q8IZJ0 200 aa18.79■□□□□ 0.6
SS18-222ENST00000582792 POLKQ9UBT6 870 aa18.78■□□□□ 0.6
SS18-222ENST00000582792 GNPATO15228 680 aa18.77■□□□□ 0.6
SS18-222ENST00000582792 ATP6V1AP38606 617 aa18.77■□□□□ 0.6
SS18-222ENST00000582792 PLEKHG2Q9H7P9 1386 aa18.77■□□□□ 0.6
SS18-222ENST00000582792 ATG3Q9NT62 314 aa18.76■□□□□ 0.59
SS18-222ENST00000582792 WWC3Q9ULE0 1092 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms