RNA–Protein interactions for RNA: ENST00000581514.1

SCN4A-202, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

TSL 3

Gene SCN4A, Length 567 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-202ENST00000581514 ARXQ96QS3 562 aa20.82■□□□□ 0.92
SCN4A-202ENST00000581514 USP47Q96K76 1375 aa20.82■□□□□ 0.92
SCN4A-202ENST00000581514 SYTL4Q96C24 671 aaPredicted RBP20.81■□□□□ 0.92
SCN4A-202ENST00000581514 GGNBP2Q9H3C7 697 aa20.81■□□□□ 0.92
SCN4A-202ENST00000581514 LY75O60449 1722 aa20.8■□□□□ 0.92
SCN4A-202ENST00000581514 NSD2O96028 1365 aa20.8■□□□□ 0.92
SCN4A-202ENST00000581514 TUBGCP6Q96RT7 1819 aa20.8■□□□□ 0.92
SCN4A-202ENST00000581514 NBPF6Q5VWK0 638 aa20.79■□□□□ 0.92
SCN4A-202ENST00000581514 NBPF4Q96M43 638 aa20.79■□□□□ 0.92
SCN4A-202ENST00000581514 MAP3K5Q99683 1374 aa20.79■□□□□ 0.92
SCN4A-202ENST00000581514 KIF20BQ96Q89 1820 aa20.78■□□□□ 0.92
SCN4A-202ENST00000581514 KCNQ4P56696 695 aa20.78■□□□□ 0.92
SCN4A-202ENST00000581514 SLC16A10Q8TF71 515 aa20.78■□□□□ 0.92
SCN4A-202ENST00000581514 CHD4Q14839 1912 aa20.77■□□□□ 0.92
SCN4A-202ENST00000581514 USHBP1Q8N6Y0 703 aa20.77■□□□□ 0.92
SCN4A-202ENST00000581514 COL24A1Q17RW2 1714 aa20.77■□□□□ 0.92
SCN4A-202ENST00000581514 SMG6Q86US8 1419 aaKnown RBP20.77■□□□□ 0.91
SCN4A-202ENST00000581514 PNPLA7Q6ZV29 1317 aa20.77■□□□□ 0.91
SCN4A-202ENST00000581514 UTRNP46939 3433 aa20.76■□□□□ 0.91
SCN4A-202ENST00000581514 CGNL1Q0VF96 1302 aa20.76■□□□□ 0.91
SCN4A-202ENST00000581514 RAPGEF4Q8WZA2 1011 aa20.75■□□□□ 0.91
SCN4A-202ENST00000581514 TFCP2L1Q9NZI6 479 aa20.75■□□□□ 0.91
SCN4A-202ENST00000581514 TRIM26Q12899 539 aaPredicted RBP20.74■□□□□ 0.91
SCN4A-202ENST00000581514 CDCA8Q53HL2 280 aa20.74■□□□□ 0.91
SCN4A-202ENST00000581514 INSRP06213 1382 aa20.73■□□□□ 0.91
SCN4A-202ENST00000581514 HSP90AB2PQ58FF8 381 aa20.73■□□□□ 0.91
SCN4A-202ENST00000581514 CCNL1Q9UK58 526 aaPredicted RBP20.73■□□□□ 0.91
SCN4A-202ENST00000581514 FLT4P35916 1363 aa20.72■□□□□ 0.91
SCN4A-202ENST00000581514 TATP17735 454 aaPredicted RBP20.72■□□□□ 0.91
SCN4A-202ENST00000581514 POLD1P28340 1107 aa20.72■□□□□ 0.91
SCN4A-202ENST00000581514 KIF24Q5T7B8 1368 aa20.72■□□□□ 0.91
SCN4A-202ENST00000581514 ZNF784Q8NCA9 323 aaPredicted RBP20.71■□□□□ 0.91
SCN4A-202ENST00000581514 KLHL34Q8N239 644 aa20.69■□□□□ 0.9
SCN4A-202ENST00000581514 CARD14Q9BXL6 1004 aa20.69■□□□□ 0.9
SCN4A-202ENST00000581514 PCDH11XQ9BZA7 1347 aa20.69■□□□□ 0.9
SCN4A-202ENST00000581514 PCDH11YQ9BZA8 1340 aa20.69■□□□□ 0.9
SCN4A-202ENST00000581514 NSD3Q9BZ95 1437 aa20.68■□□□□ 0.9
SCN4A-202ENST00000581514 GPR162Q16538 588 aa20.67■□□□□ 0.9
SCN4A-202ENST00000581514 C5P01031 1676 aa20.67■□□□□ 0.9
SCN4A-202ENST00000581514 EMILIN1Q9Y6C2 1016 aa20.66■□□□□ 0.9
SCN4A-202ENST00000581514 CYP27B1O15528 508 aa20.65■□□□□ 0.9
SCN4A-202ENST00000581514 COL23A1Q86Y22 540 aaPredicted RBP20.65■□□□□ 0.9
SCN4A-202ENST00000581514 ITGB4P16144 1822 aa20.64■□□□□ 0.9
SCN4A-202ENST00000581514 TAF1LQ8IZX4 1826 aa20.64■□□□□ 0.9
SCN4A-202ENST00000581514 PKD1L3Q7Z443 1732 aa20.64■□□□□ 0.9
SCN4A-202ENST00000581514 MSH5O43196 834 aa20.64■□□□□ 0.89
SCN4A-202ENST00000581514 ANKRD26Q9UPS8 1709 aa20.64■□□□□ 0.89
SCN4A-202ENST00000581514 TOGARAM1Q9Y4F4 1720 aa20.64■□□□□ 0.89
SCN4A-202ENST00000581514 PALLDQ8WX93 1383 aa20.63■□□□□ 0.89
SCN4A-202ENST00000581514 NCAPD2Q15021 1401 aa20.62■□□□□ 0.89
SCN4A-202ENST00000581514 MPRIPQ6WCQ1 1025 aa20.62■□□□□ 0.89
SCN4A-202ENST00000581514 NLGN2Q8NFZ4 835 aa20.62■□□□□ 0.89
SCN4A-202ENST00000581514 GOLGB1Q14789 3259 aaKnown RBP20.62■□□□□ 0.89
SCN4A-202ENST00000581514 MAP2P11137 1827 aaKnown RBP20.62■□□□□ 0.89
SCN4A-202ENST00000581514 PPM1GO15355 546 aaPredicted RBP20.61■□□□□ 0.89
SCN4A-202ENST00000581514 PELP1Q8IZL8 1130 aaKnown RBP20.61■□□□□ 0.89
SCN4A-202ENST00000581514 TIMELESSQ9UNS1 1208 aa20.61■□□□□ 0.89
SCN4A-202ENST00000581514 HMGB2P26583 209 aaKnown RBP20.6■□□□□ 0.89
SCN4A-202ENST00000581514 MSL1Q68DK7 614 aa20.59■□□□□ 0.89
SCN4A-202ENST00000581514 WASHC2AQ641Q2 1341 aa20.58■□□□□ 0.89
SCN4A-202ENST00000581514 SMARCC1Q92922 1105 aaPredicted RBP20.58■□□□□ 0.89
SCN4A-202ENST00000581514 C4BP0C0L5 1744 aa20.58■□□□□ 0.88
SCN4A-202ENST00000581514 NKX1-1Q15270 411 aaPredicted RBP20.57■□□□□ 0.88
SCN4A-202ENST00000581514 FLAD1Q8NFF5 587 aa20.57■□□□□ 0.88
SCN4A-202ENST00000581514 SPG7Q9UQ90 795 aa20.57■□□□□ 0.88
SCN4A-202ENST00000581514 PIGBQ92521 554 aa20.56■□□□□ 0.88
SCN4A-202ENST00000581514 EYA1Q99502 592 aa20.56■□□□□ 0.88
SCN4A-202ENST00000581514 POLKQ9UBT6 870 aa20.55■□□□□ 0.88
SCN4A-202ENST00000581514 UBR3Q6ZT12 1888 aa20.54■□□□□ 0.88
SCN4A-202ENST00000581514 YBX3P16989 372 aaKnown RBP eCLIP20.54■□□□□ 0.88
SCN4A-202ENST00000581514 AK7Q96M32 723 aa20.54■□□□□ 0.88
SCN4A-202ENST00000581514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.54■□□□□ 0.88
SCN4A-202ENST00000581514 CLSPNQ9HAW4 1339 aa20.53■□□□□ 0.88
SCN4A-202ENST00000581514 GRIN3BO60391 1043 aa20.52■□□□□ 0.88
SCN4A-202ENST00000581514 C1QTNF8P60827 252 aa20.52■□□□□ 0.88
SCN4A-202ENST00000581514 AMIGO3Q86WK7 504 aa20.52■□□□□ 0.88
SCN4A-202ENST00000581514 POLR3GLQ9BT43 218 aa20.52■□□□□ 0.88
SCN4A-202ENST00000581514 CD2APQ9Y5K6 639 aa20.51■□□□□ 0.87
SCN4A-202ENST00000581514 LOC102724428A0A0B4J2F2 783 aa20.5■□□□□ 0.87
SCN4A-202ENST00000581514 SIK1P57059 783 aa20.5■□□□□ 0.87
SCN4A-202ENST00000581514 TMOD3Q9NYL9 352 aa20.5■□□□□ 0.87
SCN4A-202ENST00000581514 PHF14O94880 888 aa20.49■□□□□ 0.87
SCN4A-202ENST00000581514 PHKG2P15735 406 aa20.49■□□□□ 0.87
SCN4A-202ENST00000581514 TNNT2P45379 298 aaPredicted RBP20.49■□□□□ 0.87
SCN4A-202ENST00000581514 EIF4A2Q14240 407 aaKnown RBP20.49■□□□□ 0.87
SCN4A-202ENST00000581514 SMIM5Q71RC9 77 aa20.49■□□□□ 0.87
SCN4A-202ENST00000581514 IFNL2Q8IZJ0 200 aa20.49■□□□□ 0.87
SCN4A-202ENST00000581514 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.48■□□□□ 0.87
SCN4A-202ENST00000581514 LINC00116Q8NCU8 138 aa20.48■□□□□ 0.87
SCN4A-202ENST00000581514 PCGF6Q9BYE7 350 aa20.48■□□□□ 0.87
SCN4A-202ENST00000581514 ASAP1Q9ULH1 1129 aa20.48■□□□□ 0.87
SCN4A-202ENST00000581514 SSFA2P28290 1259 aa20.47■□□□□ 0.87
SCN4A-202ENST00000581514 SENP3-EIF4A1A0A087X0R7 540 aa20.46■□□□□ 0.87
SCN4A-202ENST00000581514 GIGYF1O75420 1035 aaPredicted RBP20.46■□□□□ 0.87
SCN4A-202ENST00000581514 PLEKHG2Q9H7P9 1386 aa20.46■□□□□ 0.87
SCN4A-202ENST00000581514 ITPK1Q13572 414 aa20.45■□□□□ 0.86
SCN4A-202ENST00000581514 ATP6V1AP38606 617 aa20.44■□□□□ 0.86
SCN4A-202ENST00000581514 EIF4G2P78344 907 aaKnown RBP eCLIP20.44■□□□□ 0.86
SCN4A-202ENST00000581514 ATG3Q9NT62 314 aa20.44■□□□□ 0.86
SCN4A-202ENST00000581514 IGSF1Q8N6C5 1336 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms