RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 NGDNQ8NEJ9 315 aaKnown RBP13.62□□□□□ -0.23
CRLF3-202ENST00000577725 MRS2Q9HD23 443 aa13.62□□□□□ -0.23
CRLF3-202ENST00000577725 CRB1P82279 1406 aa13.62□□□□□ -0.23
CRLF3-202ENST00000577725 CPSF1Q10570 1443 aaKnown RBP13.62□□□□□ -0.23
CRLF3-202ENST00000577725 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
CRLF3-202ENST00000577725 PHRF1Q9P1Y6 1649 aaKnown RBP13.61□□□□□ -0.23
CRLF3-202ENST00000577725 NPC1L1Q9UHC9 1359 aa13.61□□□□□ -0.23
CRLF3-202ENST00000577725 ACEP12821 1306 aa13.61□□□□□ -0.23
CRLF3-202ENST00000577725 CGNL1Q0VF96 1302 aa13.61□□□□□ -0.23
CRLF3-202ENST00000577725 CPDO75976 1380 aa13.6□□□□□ -0.23
CRLF3-202ENST00000577725 PLEKHG3A1L390 1219 aa13.6□□□□□ -0.23
CRLF3-202ENST00000577725 TNNT2P45379 298 aaPredicted RBP13.6□□□□□ -0.23
CRLF3-202ENST00000577725 ZNF827Q17R98 1081 aa13.6□□□□□ -0.23
CRLF3-202ENST00000577725 COL5A2P05997 1499 aaPredicted RBP13.6□□□□□ -0.23
CRLF3-202ENST00000577725 LMO7Q8WWI1 1683 aa13.59□□□□□ -0.23
CRLF3-202ENST00000577725 MORC1Q86VD1 984 aa13.59□□□□□ -0.23
CRLF3-202ENST00000577725 GGNBP2Q9H3C7 697 aa13.59□□□□□ -0.23
CRLF3-202ENST00000577725 PAPPAQ13219 1627 aa13.59□□□□□ -0.23
CRLF3-202ENST00000577725 ANKRD26Q9UPS8 1709 aa13.59□□□□□ -0.23
CRLF3-202ENST00000577725 EDC4Q6P2E9 1401 aaKnown RBP13.58□□□□□ -0.24
CRLF3-202ENST00000577725 PPP2R1AP30153 589 aa13.58□□□□□ -0.24
CRLF3-202ENST00000577725 NUTM2GQ5VZR2 741 aa13.57□□□□□ -0.24
CRLF3-202ENST00000577725 NME9Q86XW9 330 aa13.57□□□□□ -0.24
CRLF3-202ENST00000577725 USP6P35125 1406 aa13.56□□□□□ -0.24
CRLF3-202ENST00000577725 WDR90Q96KV7 1748 aa13.56□□□□□ -0.24
CRLF3-202ENST00000577725 FYB1O15117 783 aa13.56□□□□□ -0.24
CRLF3-202ENST00000577725 NLRP13Q86W25 1043 aa13.56□□□□□ -0.24
CRLF3-202ENST00000577725 CDCA7Q9BWT1 371 aaPredicted RBP13.56□□□□□ -0.24
CRLF3-202ENST00000577725 POLR3AO14802 1390 aaPredicted RBP13.56□□□□□ -0.24
CRLF3-202ENST00000577725 BRD4O60885 1362 aaPredicted RBP13.56□□□□□ -0.24
CRLF3-202ENST00000577725 NSD2O96028 1365 aa13.56□□□□□ -0.24
CRLF3-202ENST00000577725 HTRA3P83110 453 aa13.55□□□□□ -0.24
CRLF3-202ENST00000577725 FAM9BQ8IZU0 186 aa13.55□□□□□ -0.24
CRLF3-202ENST00000577725 TTC21BQ7Z4L5 1316 aa13.55□□□□□ -0.24
CRLF3-202ENST00000577725 COL24A1Q17RW2 1714 aa13.55□□□□□ -0.24
CRLF3-202ENST00000577725 PCNTO95613 3336 aa13.54□□□□□ -0.24
CRLF3-202ENST00000577725 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
CRLF3-202ENST00000577725 ZNF692Q9BU19 519 aaPredicted RBP13.54□□□□□ -0.24
CRLF3-202ENST00000577725 PNPLA7Q6ZV29 1317 aa13.54□□□□□ -0.24
CRLF3-202ENST00000577725 TOM1L2Q6ZVM7 507 aa13.53□□□□□ -0.24
CRLF3-202ENST00000577725 HSPA1AP0DMV8 641 aaKnown RBP13.52□□□□□ -0.25
CRLF3-202ENST00000577725 HSPA1BP0DMV9 641 aaKnown RBP13.52□□□□□ -0.25
CRLF3-202ENST00000577725 FBLN1P23142 703 aa13.52□□□□□ -0.25
CRLF3-202ENST00000577725 LRRC4BQ9NT99 713 aa13.52□□□□□ -0.25
CRLF3-202ENST00000577725 RBM46Q8TBY0 533 aaKnown RBP13.51□□□□□ -0.25
CRLF3-202ENST00000577725 CD2APQ9Y5K6 639 aa13.51□□□□□ -0.25
CRLF3-202ENST00000577725 PIK3C2AO00443 1686 aa13.5□□□□□ -0.25
CRLF3-202ENST00000577725 USP19O94966 1318 aa13.5□□□□□ -0.25
CRLF3-202ENST00000577725 TFCP2L1Q9NZI6 479 aa13.5□□□□□ -0.25
CRLF3-202ENST00000577725 EXOC5O00471 708 aa13.49□□□□□ -0.25
CRLF3-202ENST00000577725 GCP02774 474 aa13.49□□□□□ -0.25
CRLF3-202ENST00000577725 ABTB2Q8N961 1025 aa13.49□□□□□ -0.25
CRLF3-202ENST00000577725 PNISRQ8TF01 805 aaKnown RBP13.49□□□□□ -0.25
CRLF3-202ENST00000577725 COG3Q96JB2 828 aa13.49□□□□□ -0.25
CRLF3-202ENST00000577725 TTC21AQ8NDW8 1320 aa13.48□□□□□ -0.25
CRLF3-202ENST00000577725 SOX12O15370 315 aa13.48□□□□□ -0.25
CRLF3-202ENST00000577725 MTHFSP49914 203 aa13.48□□□□□ -0.25
CRLF3-202ENST00000577725 FSTL1Q12841 308 aa13.48□□□□□ -0.25
CRLF3-202ENST00000577725 QSER1Q2KHR3 1735 aa13.47□□□□□ -0.25
CRLF3-202ENST00000577725 NHSQ6T4R5 1651 aa13.47□□□□□ -0.25
CRLF3-202ENST00000577725 SLC27A3Q5K4L6 730 aa13.47□□□□□ -0.25
CRLF3-202ENST00000577725 ACSBG1Q96GR2 724 aa13.47□□□□□ -0.25
CRLF3-202ENST00000577725 MAP2P11137 1827 aaKnown RBP13.47□□□□□ -0.25
CRLF3-202ENST00000577725 TNS2Q63HR2 1409 aa13.47□□□□□ -0.25
CRLF3-202ENST00000577725 WDR17Q8IZU2 1322 aa13.46□□□□□ -0.25
CRLF3-202ENST00000577725 FAM161AQ3B820 660 aa13.46□□□□□ -0.25
CRLF3-202ENST00000577725 C16orf71Q8IYS4 520 aaPredicted RBP13.46□□□□□ -0.25
CRLF3-202ENST00000577725 FOXD4L1Q9NU39 408 aa13.46□□□□□ -0.25
CRLF3-202ENST00000577725 ZBTB7CA1YPR0 619 aa13.45□□□□□ -0.26
CRLF3-202ENST00000577725 NMRK2Q9NPI5 230 aa13.45□□□□□ -0.26
CRLF3-202ENST00000577725 PPM1GO15355 546 aaPredicted RBP13.44□□□□□ -0.26
CRLF3-202ENST00000577725 NLRP6P59044 892 aa13.44□□□□□ -0.26
CRLF3-202ENST00000577725 HNRNPUQ00839 825 aaKnown RBP eCLIP13.44□□□□□ -0.26
CRLF3-202ENST00000577725 RRS1Q15050 365 aaKnown RBP13.44□□□□□ -0.26
CRLF3-202ENST00000577725 EMILIN1Q9Y6C2 1016 aa13.44□□□□□ -0.26
CRLF3-202ENST00000577725 USP31Q70CQ4 1352 aa13.44□□□□□ -0.26
CRLF3-202ENST00000577725 MSH5O43196 834 aa13.43□□□□□ -0.26
CRLF3-202ENST00000577725 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
CRLF3-202ENST00000577725 POLKQ9UBT6 870 aa13.43□□□□□ -0.26
CRLF3-202ENST00000577725 WNK3Q9BYP7 1800 aa13.43□□□□□ -0.26
CRLF3-202ENST00000577725 COL3A1P02461 1466 aaPredicted RBP13.42□□□□□ -0.26
CRLF3-202ENST00000577725 CFAP53Q96M91 514 aa13.42□□□□□ -0.26
CRLF3-202ENST00000577725 CARD10Q9BWT7 1032 aa13.42□□□□□ -0.26
CRLF3-202ENST00000577725 USP54Q70EL1 1684 aa13.42□□□□□ -0.26
CRLF3-202ENST00000577725 IGSF1Q8N6C5 1336 aa13.41□□□□□ -0.26
CRLF3-202ENST00000577725 MSL1Q68DK7 614 aa13.41□□□□□ -0.26
CRLF3-202ENST00000577725 ADAMTS8Q9UP79 889 aa13.41□□□□□ -0.26
CRLF3-202ENST00000577725 PIAS4Q8N2W9 510 aaPredicted RBP13.4□□□□□ -0.26
CRLF3-202ENST00000577725 SMG6Q86US8 1419 aaKnown RBP13.39□□□□□ -0.27
CRLF3-202ENST00000577725 CCDC146Q8IYE0 955 aa13.39□□□□□ -0.27
CRLF3-202ENST00000577725 CNKSR2Q8WXI2 1034 aa13.39□□□□□ -0.27
CRLF3-202ENST00000577725 AXIN2Q9Y2T1 843 aa13.39□□□□□ -0.27
CRLF3-202ENST00000577725 CSB-PGBD3P0DP91 1061 aa13.38□□□□□ -0.27
CRLF3-202ENST00000577725 COL23A1Q86Y22 540 aaPredicted RBP13.38□□□□□ -0.27
CRLF3-202ENST00000577725 CICQ96RK0 1608 aaPredicted RBP13.38□□□□□ -0.27
CRLF3-202ENST00000577725 ABCC6O95255 1503 aa13.38□□□□□ -0.27
CRLF3-202ENST00000577725 MAP3K19Q56UN5 1328 aa13.38□□□□□ -0.27
CRLF3-202ENST00000577725 BTAF1O14981 1849 aa13.37□□□□□ -0.27
CRLF3-202ENST00000577725 CENPBP07199 599 aaPredicted RBP13.37□□□□□ -0.27
CRLF3-202ENST00000577725 SALL2Q9Y467 1007 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms