RNA–Protein interactions for RNA: ENST00000575135.5

TVP23A-209, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,298 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-209ENST00000575135 TMF1P82094 1093 aa23.46■■□□□ 1.35
TVP23A-209ENST00000575135 NBPF6Q5VWK0 638 aa23.45■■□□□ 1.34
TVP23A-209ENST00000575135 NBPF4Q96M43 638 aa23.45■■□□□ 1.34
TVP23A-209ENST00000575135 DOT1LQ8TEK3 1739 aa23.45■■□□□ 1.34
TVP23A-209ENST00000575135 SHANK3Q9BYB0 1731 aa23.45■■□□□ 1.34
TVP23A-209ENST00000575135 RTL1A6NKG5 1358 aa23.44■■□□□ 1.34
TVP23A-209ENST00000575135 USP47Q96K76 1375 aa23.44■■□□□ 1.34
TVP23A-209ENST00000575135 NSD2O96028 1365 aa23.43■■□□□ 1.34
TVP23A-209ENST00000575135 USHBP1Q8N6Y0 703 aa23.43■■□□□ 1.34
TVP23A-209ENST00000575135 PNPLA7Q6ZV29 1317 aa23.42■■□□□ 1.34
TVP23A-209ENST00000575135 SLC16A10Q8TF71 515 aa23.42■■□□□ 1.34
TVP23A-209ENST00000575135 QSER1Q2KHR3 1735 aa23.42■■□□□ 1.34
TVP23A-209ENST00000575135 TFCP2L1Q9NZI6 479 aa23.41■■□□□ 1.34
TVP23A-209ENST00000575135 GOLGB1Q14789 3259 aaKnown RBP23.41■■□□□ 1.34
TVP23A-209ENST00000575135 MAP3K5Q99683 1374 aa23.4■■□□□ 1.34
TVP23A-209ENST00000575135 LY75O60449 1722 aa23.4■■□□□ 1.34
TVP23A-209ENST00000575135 HSP90AB2PQ58FF8 381 aa23.39■■□□□ 1.33
TVP23A-209ENST00000575135 RAPGEF4Q8WZA2 1011 aa23.39■■□□□ 1.33
TVP23A-209ENST00000575135 TUBGCP6Q96RT7 1819 aa23.38■■□□□ 1.33
TVP23A-209ENST00000575135 CGNL1Q0VF96 1302 aa23.38■■□□□ 1.33
TVP23A-209ENST00000575135 ZNF784Q8NCA9 323 aaPredicted RBP23.38■■□□□ 1.33
TVP23A-209ENST00000575135 SMG6Q86US8 1419 aaKnown RBP23.38■■□□□ 1.33
TVP23A-209ENST00000575135 POLD1P28340 1107 aa23.37■■□□□ 1.33
TVP23A-209ENST00000575135 TRIM26Q12899 539 aaPredicted RBP23.37■■□□□ 1.33
TVP23A-209ENST00000575135 CCNL1Q9UK58 526 aaPredicted RBP23.37■■□□□ 1.33
TVP23A-209ENST00000575135 CHD4Q14839 1912 aa23.37■■□□□ 1.33
TVP23A-209ENST00000575135 TATP17735 454 aaPredicted RBP23.36■■□□□ 1.33
TVP23A-209ENST00000575135 CDCA8Q53HL2 280 aa23.36■■□□□ 1.33
TVP23A-209ENST00000575135 KLHL34Q8N239 644 aa23.36■■□□□ 1.33
TVP23A-209ENST00000575135 INSRP06213 1382 aa23.36■■□□□ 1.33
TVP23A-209ENST00000575135 COL24A1Q17RW2 1714 aa23.36■■□□□ 1.33
TVP23A-209ENST00000575135 KIF20BQ96Q89 1820 aa23.36■■□□□ 1.33
TVP23A-209ENST00000575135 CARD14Q9BXL6 1004 aa23.34■■□□□ 1.33
TVP23A-209ENST00000575135 FLT4P35916 1363 aa23.33■■□□□ 1.33
TVP23A-209ENST00000575135 GPR162Q16538 588 aa23.33■■□□□ 1.33
TVP23A-209ENST00000575135 KIF24Q5T7B8 1368 aa23.31■■□□□ 1.32
TVP23A-209ENST00000575135 PCDH11XQ9BZA7 1347 aa23.31■■□□□ 1.32
TVP23A-209ENST00000575135 PCDH11YQ9BZA8 1340 aa23.31■■□□□ 1.32
TVP23A-209ENST00000575135 MSH5O43196 834 aa23.3■■□□□ 1.32
TVP23A-209ENST00000575135 COL23A1Q86Y22 540 aaPredicted RBP23.3■■□□□ 1.32
TVP23A-209ENST00000575135 EMILIN1Q9Y6C2 1016 aa23.3■■□□□ 1.32
TVP23A-209ENST00000575135 NSD3Q9BZ95 1437 aa23.29■■□□□ 1.32
TVP23A-209ENST00000575135 CYP27B1O15528 508 aa23.28■■□□□ 1.32
TVP23A-209ENST00000575135 MPRIPQ6WCQ1 1025 aa23.28■■□□□ 1.32
TVP23A-209ENST00000575135 NLGN2Q8NFZ4 835 aa23.28■■□□□ 1.32
TVP23A-209ENST00000575135 PELP1Q8IZL8 1130 aaKnown RBP23.27■■□□□ 1.32
TVP23A-209ENST00000575135 PPM1GO15355 546 aaPredicted RBP23.26■■□□□ 1.31
TVP23A-209ENST00000575135 C5P01031 1676 aa23.25■■□□□ 1.31
TVP23A-209ENST00000575135 PALLDQ8WX93 1383 aa23.25■■□□□ 1.31
TVP23A-209ENST00000575135 MSL1Q68DK7 614 aa23.24■■□□□ 1.31
TVP23A-209ENST00000575135 TOGARAM1Q9Y4F4 1720 aa23.22■■□□□ 1.31
TVP23A-209ENST00000575135 ITGB4P16144 1822 aa23.22■■□□□ 1.31
TVP23A-209ENST00000575135 TAF1LQ8IZX4 1826 aa23.22■■□□□ 1.31
TVP23A-209ENST00000575135 TIMELESSQ9UNS1 1208 aa23.21■■□□□ 1.31
TVP23A-209ENST00000575135 PKD1L3Q7Z443 1732 aa23.21■■□□□ 1.31
TVP23A-209ENST00000575135 NCAPD2Q15021 1401 aa23.2■■□□□ 1.3
TVP23A-209ENST00000575135 WASHC2AQ641Q2 1341 aa23.2■■□□□ 1.3
TVP23A-209ENST00000575135 SMARCC1Q92922 1105 aaPredicted RBP23.2■■□□□ 1.3
TVP23A-209ENST00000575135 MAP2P11137 1827 aaKnown RBP23.19■■□□□ 1.3
TVP23A-209ENST00000575135 HMGB2P26583 209 aaKnown RBP23.19■■□□□ 1.3
TVP23A-209ENST00000575135 NKX1-1Q15270 411 aaPredicted RBP23.19■■□□□ 1.3
TVP23A-209ENST00000575135 FLAD1Q8NFF5 587 aa23.19■■□□□ 1.3
TVP23A-209ENST00000575135 PIGBQ92521 554 aa23.19■■□□□ 1.3
TVP23A-209ENST00000575135 SPG7Q9UQ90 795 aa23.19■■□□□ 1.3
TVP23A-209ENST00000575135 ANKRD26Q9UPS8 1709 aa23.19■■□□□ 1.3
TVP23A-209ENST00000575135 YBX3P16989 372 aaKnown RBP eCLIP23.18■■□□□ 1.3
TVP23A-209ENST00000575135 EYA1Q99502 592 aa23.18■■□□□ 1.3
TVP23A-209ENST00000575135 C4BP0C0L5 1744 aa23.16■■□□□ 1.3
TVP23A-209ENST00000575135 AMIGO3Q86WK7 504 aa23.16■■□□□ 1.3
TVP23A-209ENST00000575135 POLR3GLQ9BT43 218 aa23.16■■□□□ 1.3
TVP23A-209ENST00000575135 POLKQ9UBT6 870 aa23.16■■□□□ 1.3
TVP23A-209ENST00000575135 C1QTNF8P60827 252 aa23.15■■□□□ 1.3
TVP23A-209ENST00000575135 AK7Q96M32 723 aa23.15■■□□□ 1.3
TVP23A-209ENST00000575135 GRIN3BO60391 1043 aa23.14■■□□□ 1.29
TVP23A-209ENST00000575135 SMIM5Q71RC9 77 aa23.14■■□□□ 1.29
TVP23A-209ENST00000575135 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.14■■□□□ 1.29
TVP23A-209ENST00000575135 TNNT2P45379 298 aaPredicted RBP23.13■■□□□ 1.29
TVP23A-209ENST00000575135 CD2APQ9Y5K6 639 aa23.13■■□□□ 1.29
TVP23A-209ENST00000575135 PCGF6Q9BYE7 350 aa23.12■■□□□ 1.29
TVP23A-209ENST00000575135 TMOD3Q9NYL9 352 aa23.12■■□□□ 1.29
TVP23A-209ENST00000575135 UBR3Q6ZT12 1888 aa23.11■■□□□ 1.29
TVP23A-209ENST00000575135 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.11■■□□□ 1.29
TVP23A-209ENST00000575135 LOC102724428A0A0B4J2F2 783 aa23.11■■□□□ 1.29
TVP23A-209ENST00000575135 PHF14O94880 888 aa23.11■■□□□ 1.29
TVP23A-209ENST00000575135 SIK1P57059 783 aa23.11■■□□□ 1.29
TVP23A-209ENST00000575135 SENP3-EIF4A1A0A087X0R7 540 aa23.1■■□□□ 1.29
TVP23A-209ENST00000575135 PHKG2P15735 406 aa23.1■■□□□ 1.29
TVP23A-209ENST00000575135 EIF4A2Q14240 407 aaKnown RBP23.1■■□□□ 1.29
TVP23A-209ENST00000575135 IFNL2Q8IZJ0 200 aa23.1■■□□□ 1.29
TVP23A-209ENST00000575135 LINC00116Q8NCU8 138 aa23.1■■□□□ 1.29
TVP23A-209ENST00000575135 ASAP1Q9ULH1 1129 aa23.1■■□□□ 1.29
TVP23A-209ENST00000575135 CLSPNQ9HAW4 1339 aa23.08■■□□□ 1.29
TVP23A-209ENST00000575135 GIGYF1O75420 1035 aaPredicted RBP23.08■■□□□ 1.29
TVP23A-209ENST00000575135 ITPK1Q13572 414 aa23.07■■□□□ 1.28
TVP23A-209ENST00000575135 SSFA2P28290 1259 aa23.06■■□□□ 1.28
TVP23A-209ENST00000575135 ATP6V1AP38606 617 aa23.06■■□□□ 1.28
TVP23A-209ENST00000575135 ATG3Q9NT62 314 aa23.06■■□□□ 1.28
TVP23A-209ENST00000575135 CEP350Q5VT06 3117 aa23.06■■□□□ 1.28
TVP23A-209ENST00000575135 GNPATO15228 680 aa23.04■■□□□ 1.28
TVP23A-209ENST00000575135 PANK3Q9H999 370 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms