RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DPH6Q7L8W6 267 aa9.34□□□□□ -0.91
VPS53-217ENST00000575100 SUGT1Q9Y2Z0 365 aa9.34□□□□□ -0.91
VPS53-217ENST00000575100 JCADQ9P266 1359 aa9.34□□□□□ -0.91
VPS53-217ENST00000575100 ZEB1P37275 1124 aaPredicted RBP9.33□□□□□ -0.92
VPS53-217ENST00000575100 MDM2Q00987 491 aaPredicted RBP9.33□□□□□ -0.92
VPS53-217ENST00000575100 ZNF579Q8NAF0 562 aaKnown RBP9.33□□□□□ -0.92
VPS53-217ENST00000575100 PRM3Q9NNZ6 103 aa9.33□□□□□ -0.92
VPS53-217ENST00000575100 GPHNQ9NQX3 736 aaPredicted RBP9.33□□□□□ -0.92
VPS53-217ENST00000575100 PIK3R4Q99570 1358 aa9.33□□□□□ -0.92
VPS53-217ENST00000575100 PTGDRQ13258 359 aa9.33□□□□□ -0.92
VPS53-217ENST00000575100 ADAMTS13Q76LX8 1427 aa9.33□□□□□ -0.92
VPS53-217ENST00000575100 TBX22Q9Y458 520 aa9.33□□□□□ -0.92
VPS53-217ENST00000575100 RAB11FIP3O75154 756 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 HDGFP51858 240 aaKnown RBP9.32□□□□□ -0.92
VPS53-217ENST00000575100 NPAS4Q8IUM7 802 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 SLAIN2Q9P270 581 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 TRPM2O94759 1503 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 RECKO95980 971 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 NEFLP07196 543 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 EXOC8Q8IYI6 725 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 MYH16Q9H6N6 1097 aa9.32□□□□□ -0.92
VPS53-217ENST00000575100 SPHKAPQ2M3C7 1700 aa9.31□□□□□ -0.92
VPS53-217ENST00000575100 XRN1Q8IZH2 1706 aaKnown RBP9.31□□□□□ -0.92
VPS53-217ENST00000575100 LMOD1P29536 600 aaPredicted RBP9.31□□□□□ -0.92
VPS53-217ENST00000575100 PHLDB3Q6NSJ2 640 aa9.31□□□□□ -0.92
VPS53-217ENST00000575100 RBM33Q96EV2 1170 aaKnown RBP9.31□□□□□ -0.92
VPS53-217ENST00000575100 PHOX2BQ99453 314 aa9.31□□□□□ -0.92
VPS53-217ENST00000575100 CCDC144AA2RUR9 1427 aa9.31□□□□□ -0.92
VPS53-217ENST00000575100 LRP6O75581 1613 aa9.3□□□□□ -0.92
VPS53-217ENST00000575100 CLTCL1P53675 1640 aa9.3□□□□□ -0.92
VPS53-217ENST00000575100 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS53-217ENST00000575100 L3MBTL2Q969R5 705 aa9.3□□□□□ -0.92
VPS53-217ENST00000575100 NRXN3Q9Y4C0 1643 aa9.3□□□□□ -0.92
VPS53-217ENST00000575100 TONSLQ96HA7 1378 aa9.3□□□□□ -0.92
VPS53-217ENST00000575100 NOP9Q86U38 636 aaKnown RBP9.3□□□□□ -0.92
VPS53-217ENST00000575100 RBM46Q8TBY0 533 aaKnown RBP9.3□□□□□ -0.92
VPS53-217ENST00000575100 FAM217BQ9NTX9 383 aaPredicted RBP9.3□□□□□ -0.92
VPS53-217ENST00000575100 SPATA31A6Q5VVP1 1343 aa9.29□□□□□ -0.92
VPS53-217ENST00000575100 SETBP1Q9Y6X0 1596 aa9.29□□□□□ -0.92
VPS53-217ENST00000575100 NHSL1Q5SYE7 1610 aa9.29□□□□□ -0.92
VPS53-217ENST00000575100 DCCP43146 1447 aa9.29□□□□□ -0.92
VPS53-217ENST00000575100 RBM27Q9P2N5 1060 aaKnown RBP9.28□□□□□ -0.92
VPS53-217ENST00000575100 TPD52L2O43399 206 aaKnown RBP9.28□□□□□ -0.92
VPS53-217ENST00000575100 C7P10643 843 aa9.28□□□□□ -0.92
VPS53-217ENST00000575100 CDCA7Q9BWT1 371 aaPredicted RBP9.28□□□□□ -0.92
VPS53-217ENST00000575100 SPATA31E1Q6ZUB1 1445 aa9.27□□□□□ -0.93
VPS53-217ENST00000575100 PTPRUQ92729 1446 aa9.27□□□□□ -0.93
VPS53-217ENST00000575100 RGL3Q3MIN7 710 aa9.27□□□□□ -0.93
VPS53-217ENST00000575100 ZNF326Q5BKZ1 582 aaKnown RBP9.27□□□□□ -0.93
VPS53-217ENST00000575100 UCN2Q96RP3 112 aa9.27□□□□□ -0.93
VPS53-217ENST00000575100 C19orf44Q9H6X5 657 aa9.26□□□□□ -0.93
VPS53-217ENST00000575100 CLEC11AQ9Y240 323 aa9.26□□□□□ -0.93
VPS53-217ENST00000575100 CDK12Q9NYV4 1490 aaPredicted RBP9.26□□□□□ -0.93
VPS53-217ENST00000575100 CDCA8Q53HL2 280 aa9.26□□□□□ -0.93
VPS53-217ENST00000575100 TFIP11Q9UBB9 837 aaKnown RBP9.26□□□□□ -0.93
VPS53-217ENST00000575100 LIMD1Q9UGP4 676 aa9.26□□□□□ -0.93
VPS53-217ENST00000575100 ASXL1Q8IXJ9 1541 aa9.26□□□□□ -0.93
VPS53-217ENST00000575100 ANKRD33BA6NCL7 494 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 SOWAHDA6NJG2 315 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 MARSP56192 900 aaKnown RBP9.25□□□□□ -0.93
VPS53-217ENST00000575100 NBPF8Q3BBV2 869 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 GPATCH3Q96I76 525 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 ALG2Q9H553 416 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 LAMC1P11047 1609 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 SBNO2Q9Y2G9 1366 aa9.25□□□□□ -0.93
VPS53-217ENST00000575100 WASHC4Q2M389 1173 aa9.24□□□□□ -0.93
VPS53-217ENST00000575100 ZNF772Q68DY9 489 aaPredicted RBP9.24□□□□□ -0.93
VPS53-217ENST00000575100 ATF3P18847 181 aa9.24□□□□□ -0.93
VPS53-217ENST00000575100 FARP1Q9Y4F1 1045 aaPredicted RBP9.24□□□□□ -0.93
VPS53-217ENST00000575100 NALCNQ8IZF0 1738 aa9.24□□□□□ -0.93
VPS53-217ENST00000575100 MST1RQ04912 1400 aa9.24□□□□□ -0.93
VPS53-217ENST00000575100 DSG2Q14126 1118 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 GORABQ5T7V8 394 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 TEX2Q8IWB9 1127 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 LARGE2Q8N3Y3 721 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 DCAF11Q8TEB1 546 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 TMA7Q9Y2S6 64 aaKnown RBP9.23□□□□□ -0.93
VPS53-217ENST00000575100 PRIM1P49642 420 aaKnown RBP9.23□□□□□ -0.93
VPS53-217ENST00000575100 BRINP3Q76B58 766 aa9.23□□□□□ -0.93
VPS53-217ENST00000575100 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS53-217ENST00000575100 NEXMIFQ5QGS0 1516 aa9.22□□□□□ -0.93
VPS53-217ENST00000575100 KIF1BO60333 1816 aa9.22□□□□□ -0.93
VPS53-217ENST00000575100 ARID4AP29374 1257 aaPredicted RBP9.22□□□□□ -0.93
VPS53-217ENST00000575100 AKT1S1Q96B36 256 aa9.22□□□□□ -0.93
VPS53-217ENST00000575100 LNPKQ9C0E8 428 aa9.22□□□□□ -0.93
VPS53-217ENST00000575100 METTL14Q9HCE5 456 aaKnown RBP9.22□□□□□ -0.93
VPS53-217ENST00000575100 MAFBQ9Y5Q3 323 aaPredicted RBP9.22□□□□□ -0.93
VPS53-217ENST00000575100 ADGRL3Q9HAR2 1447 aa9.21□□□□□ -0.93
VPS53-217ENST00000575100 GPR37L1O60883 481 aa9.21□□□□□ -0.93
VPS53-217ENST00000575100 PRR29P0C7W0 189 aa9.21□□□□□ -0.93
VPS53-217ENST00000575100 FOSBP53539 338 aa9.21□□□□□ -0.93
VPS53-217ENST00000575100 MEX3CQ5U5Q3 659 aaKnown RBP9.21□□□□□ -0.93
VPS53-217ENST00000575100 NUTM2DQ5VT03 806 aaPredicted RBP9.21□□□□□ -0.93
VPS53-217ENST00000575100 FBXO33Q7Z6M2 555 aa9.21□□□□□ -0.93
VPS53-217ENST00000575100 SPDYE1Q8NFV5 336 aaPredicted RBP9.21□□□□□ -0.93
VPS53-217ENST00000575100 UPF1Q92900 1129 aaKnown RBP eCLIP9.21□□□□□ -0.93
VPS53-217ENST00000575100 TLDC2A0PJX2 215 aa9.21□□□□□ -0.94
VPS53-217ENST00000575100 HAX1O00165 279 aa9.21□□□□□ -0.94
VPS53-217ENST00000575100 ERCC5P28715 1186 aaPredicted RBP9.21□□□□□ -0.94
VPS53-217ENST00000575100 ELOAQ14241 798 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms