RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 POLKQ9UBT6 870 aa24.1■■□□□ 1.45
SMG6-214ENST00000573827 SMG6Q86US8 1419 aaKnown RBP24.1■■□□□ 1.45
SMG6-214ENST00000573827 WASHC2AQ641Q2 1341 aa24.1■■□□□ 1.45
SMG6-214ENST00000573827 ZCRB1Q8TBF4 217 aaKnown RBP24.09■■□□□ 1.45
SMG6-214ENST00000573827 DDX54Q8TDD1 881 aaKnown RBP24.09■■□□□ 1.45
SMG6-214ENST00000573827 NSD2O96028 1365 aa24.08■■□□□ 1.45
SMG6-214ENST00000573827 MAP2P11137 1827 aaKnown RBP24.07■■□□□ 1.44
SMG6-214ENST00000573827 PAPPAQ13219 1627 aa24.07■■□□□ 1.44
SMG6-214ENST00000573827 CASZ1Q86V15 1759 aa24.06■■□□□ 1.44
SMG6-214ENST00000573827 KAT6BQ8WYB5 2073 aa24.06■■□□□ 1.44
SMG6-214ENST00000573827 PDGFDQ9GZP0 370 aaPredicted RBP24.04■■□□□ 1.44
SMG6-214ENST00000573827 KIF7Q2M1P5 1343 aa24.04■■□□□ 1.44
SMG6-214ENST00000573827 DOT1LQ8TEK3 1739 aa24.03■■□□□ 1.44
SMG6-214ENST00000573827 RAPGEF4Q8WZA2 1011 aa24.02■■□□□ 1.44
SMG6-214ENST00000573827 LRRC4BQ9NT99 713 aa24.02■■□□□ 1.44
SMG6-214ENST00000573827 PRIM1P49642 420 aaKnown RBP24.01■■□□□ 1.43
SMG6-214ENST00000573827 EYA1Q99502 592 aa24.01■■□□□ 1.43
SMG6-214ENST00000573827 PPM1GO15355 546 aaPredicted RBP24■■□□□ 1.43
SMG6-214ENST00000573827 CYP27B1O15528 508 aa24■■□□□ 1.43
SMG6-214ENST00000573827 TATP17735 454 aaPredicted RBP24■■□□□ 1.43
SMG6-214ENST00000573827 SLC15A2Q16348 729 aa24■■□□□ 1.43
SMG6-214ENST00000573827 PKD1L3Q7Z443 1732 aa24■■□□□ 1.43
SMG6-214ENST00000573827 TNNT2P45379 298 aaPredicted RBP23.98■■□□□ 1.43
SMG6-214ENST00000573827 EIF4A2Q14240 407 aaKnown RBP23.98■■□□□ 1.43
SMG6-214ENST00000573827 AMER1Q5JTC6 1135 aaPredicted RBP23.98■■□□□ 1.43
SMG6-214ENST00000573827 PCDH11XQ9BZA7 1347 aa23.96■■□□□ 1.43
SMG6-214ENST00000573827 PCDH11YQ9BZA8 1340 aa23.96■■□□□ 1.43
SMG6-214ENST00000573827 STK32BQ9NY57 414 aa23.96■■□□□ 1.43
SMG6-214ENST00000573827 ZNF827Q17R98 1081 aa23.95■■□□□ 1.42
SMG6-214ENST00000573827 SPON1Q9HCB6 807 aa23.95■■□□□ 1.42
SMG6-214ENST00000573827 LY75O60449 1722 aa23.95■■□□□ 1.42
SMG6-214ENST00000573827 TOGARAM1Q9Y4F4 1720 aa23.94■■□□□ 1.42
SMG6-214ENST00000573827 PER1O15534 1290 aaPredicted RBP23.94■■□□□ 1.42
SMG6-214ENST00000573827 SLC27A3Q5K4L6 730 aa23.93■■□□□ 1.42
SMG6-214ENST00000573827 AKT1S1Q96B36 256 aa23.93■■□□□ 1.42
SMG6-214ENST00000573827 SYTL4Q96C24 671 aaPredicted RBP23.93■■□□□ 1.42
SMG6-214ENST00000573827 IGSF1Q8N6C5 1336 aa23.92■■□□□ 1.42
SMG6-214ENST00000573827 NKX1-1Q15270 411 aaPredicted RBP23.92■■□□□ 1.42
SMG6-214ENST00000573827 PTGER2P43116 358 aa23.91■■□□□ 1.42
SMG6-214ENST00000573827 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.91■■□□□ 1.42
SMG6-214ENST00000573827 KNSTRNQ9Y448 316 aa23.91■■□□□ 1.42
SMG6-214ENST00000573827 MORC1Q86VD1 984 aa23.9■■□□□ 1.42
SMG6-214ENST00000573827 PLEKHG2Q9H7P9 1386 aa23.9■■□□□ 1.42
SMG6-214ENST00000573827 ZBTB7AO95365 584 aa23.89■■□□□ 1.41
SMG6-214ENST00000573827 KCNQ4P56696 695 aa23.89■■□□□ 1.41
SMG6-214ENST00000573827 SGIP1Q9BQI5 828 aa23.89■■□□□ 1.41
SMG6-214ENST00000573827 UTRNP46939 3433 aa23.88■■□□□ 1.41
SMG6-214ENST00000573827 QSER1Q2KHR3 1735 aa23.86■■□□□ 1.41
SMG6-214ENST00000573827 ITGB4P16144 1822 aa23.86■■□□□ 1.41
SMG6-214ENST00000573827 SPG7Q9UQ90 795 aa23.85■■□□□ 1.41
SMG6-214ENST00000573827 TUBGCP6Q96RT7 1819 aa23.84■■□□□ 1.41
SMG6-214ENST00000573827 MTFR1LQ9H019 292 aa23.84■■□□□ 1.41
SMG6-214ENST00000573827 PHKG2P15735 406 aa23.83■■□□□ 1.41
SMG6-214ENST00000573827 PIGBQ92521 554 aa23.83■■□□□ 1.41
SMG6-214ENST00000573827 ATF5Q9Y2D1 282 aaPredicted RBP23.83■■□□□ 1.41
SMG6-214ENST00000573827 PNPLA7Q6ZV29 1317 aa23.83■■□□□ 1.4
SMG6-214ENST00000573827 IL13P35225 146 aa23.82■■□□□ 1.4
SMG6-214ENST00000573827 MPRIPQ6WCQ1 1025 aa23.82■■□□□ 1.4
SMG6-214ENST00000573827 AEBP1Q8IUX7 1158 aa23.82■■□□□ 1.4
SMG6-214ENST00000573827 CCNL1Q9UK58 526 aaPredicted RBP23.82■■□□□ 1.4
SMG6-214ENST00000573827 KDRP35968 1356 aa23.81■■□□□ 1.4
SMG6-214ENST00000573827 PALLDQ8WX93 1383 aa23.8■■□□□ 1.4
SMG6-214ENST00000573827 NPC1L1Q9UHC9 1359 aa23.8■■□□□ 1.4
SMG6-214ENST00000573827 COL24A1Q17RW2 1714 aa23.8■■□□□ 1.4
SMG6-214ENST00000573827 IFNL2Q8IZJ0 200 aa23.79■■□□□ 1.4
SMG6-214ENST00000573827 PPP1R1BQ9UD71 204 aaPredicted RBP23.78■■□□□ 1.4
SMG6-214ENST00000573827 GOLGB1Q14789 3259 aaKnown RBP23.77■■□□□ 1.4
SMG6-214ENST00000573827 TAF1LQ8IZX4 1826 aa23.77■■□□□ 1.4
SMG6-214ENST00000573827 MTHFSP49914 203 aa23.76■■□□□ 1.39
SMG6-214ENST00000573827 C5P01031 1676 aa23.76■■□□□ 1.39
SMG6-214ENST00000573827 CC2D1BQ5T0F9 858 aaKnown RBP23.75■■□□□ 1.39
SMG6-214ENST00000573827 KDM6AO15550 1401 aaPredicted RBP23.75■■□□□ 1.39
SMG6-214ENST00000573827 SLC16A10Q8TF71 515 aa23.74■■□□□ 1.39
SMG6-214ENST00000573827 SMARCC1Q92922 1105 aaPredicted RBP23.74■■□□□ 1.39
SMG6-214ENST00000573827 TFCP2L1Q9NZI6 479 aa23.74■■□□□ 1.39
SMG6-214ENST00000573827 SULT6B1Q6IMI4 303 aa23.73■■□□□ 1.39
SMG6-214ENST00000573827 COL3A1P02461 1466 aaPredicted RBP23.73■■□□□ 1.39
SMG6-214ENST00000573827 PLEKHO1Q53GL0 409 aaPredicted RBP23.72■■□□□ 1.39
SMG6-214ENST00000573827 AMIGO3Q86WK7 504 aa23.72■■□□□ 1.39
SMG6-214ENST00000573827 ASAP1Q9ULH1 1129 aa23.72■■□□□ 1.39
SMG6-214ENST00000573827 AMOTQ4VCS5 1084 aa23.71■■□□□ 1.39
SMG6-214ENST00000573827 COL23A1Q86Y22 540 aaPredicted RBP23.71■■□□□ 1.39
SMG6-214ENST00000573827 ATG3Q9NT62 314 aa23.71■■□□□ 1.39
SMG6-214ENST00000573827 TMOD3Q9NYL9 352 aa23.71■■□□□ 1.39
SMG6-214ENST00000573827 MAP3K5Q99683 1374 aa23.7■■□□□ 1.38
SMG6-214ENST00000573827 ZNF530Q6P9A1 599 aaPredicted RBP23.7■■□□□ 1.38
SMG6-214ENST00000573827 DCAF5Q96JK2 942 aa23.7■■□□□ 1.38
SMG6-214ENST00000573827 FHDC1Q9C0D6 1143 aaPredicted RBP23.7■■□□□ 1.38
SMG6-214ENST00000573827 C4BP0C0L5 1744 aa23.7■■□□□ 1.38
SMG6-214ENST00000573827 LOC102724428A0A0B4J2F2 783 aa23.69■■□□□ 1.38
SMG6-214ENST00000573827 ERVV-2B6SEH9 535 aa23.69■■□□□ 1.38
SMG6-214ENST00000573827 SIK1P57059 783 aa23.69■■□□□ 1.38
SMG6-214ENST00000573827 ARXQ96QS3 562 aa23.69■■□□□ 1.38
SMG6-214ENST00000573827 SYT17Q9BSW7 474 aa23.69■■□□□ 1.38
SMG6-214ENST00000573827 HSP90AB1P08238 724 aaKnown RBP23.67■■□□□ 1.38
SMG6-214ENST00000573827 ITPK1Q13572 414 aa23.67■■□□□ 1.38
SMG6-214ENST00000573827 LINC00116Q8NCU8 138 aa23.67■■□□□ 1.38
SMG6-214ENST00000573827 SLC4A9Q96Q91 983 aa23.67■■□□□ 1.38
SMG6-214ENST00000573827 UBR3Q6ZT12 1888 aa23.66■■□□□ 1.38
SMG6-214ENST00000573827 DIAPH1O60610 1272 aaKnown RBP23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms