RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 SHANK3Q9BYB0 1731 aa28.18■■■□□ 2.1
CCDC40-206ENST00000572083 ANKRD36BQ8N2N9 1353 aa28.17■■■□□ 2.1
CCDC40-206ENST00000572083 NSD2O96028 1365 aa28.16■■■□□ 2.1
CCDC40-206ENST00000572083 PRIM1P49642 420 aaKnown RBP28.16■■■□□ 2.1
CCDC40-206ENST00000572083 NLGN2Q8NFZ4 835 aa28.16■■■□□ 2.1
CCDC40-206ENST00000572083 RGPD2P0DJD1 1756 aa28.15■■■□□ 2.1
CCDC40-206ENST00000572083 MEGF6O75095 1541 aa28.13■■■□□ 2.09
CCDC40-206ENST00000572083 MAP3K19Q56UN5 1328 aa28.13■■■□□ 2.09
CCDC40-206ENST00000572083 GIGYF1O75420 1035 aaPredicted RBP28.12■■■□□ 2.09
CCDC40-206ENST00000572083 FBLN1P23142 703 aa28.11■■■□□ 2.09
CCDC40-206ENST00000572083 HOXC9P31274 260 aa28.11■■■□□ 2.09
CCDC40-206ENST00000572083 COG3Q96JB2 828 aa28.1■■■□□ 2.09
CCDC40-206ENST00000572083 AMPHP49418 695 aa28.09■■■□□ 2.09
CCDC40-206ENST00000572083 ZCRB1Q8TBF4 217 aaKnown RBP28.09■■■□□ 2.09
CCDC40-206ENST00000572083 CCNL1Q9UK58 526 aaPredicted RBP28.09■■■□□ 2.09
CCDC40-206ENST00000572083 CEP350Q5VT06 3117 aa28.09■■■□□ 2.09
CCDC40-206ENST00000572083 MSH5O43196 834 aa28.07■■■□□ 2.08
CCDC40-206ENST00000572083 PUS7Q96PZ0 661 aaKnown RBP28.06■■■□□ 2.08
CCDC40-206ENST00000572083 YBX3P16989 372 aaKnown RBP eCLIP28.05■■■□□ 2.08
CCDC40-206ENST00000572083 USP47Q96K76 1375 aa28.04■■■□□ 2.08
CCDC40-206ENST00000572083 MSL1Q68DK7 614 aa28.03■■■□□ 2.08
CCDC40-206ENST00000572083 COL23A1Q86Y22 540 aaPredicted RBP28.03■■■□□ 2.08
CCDC40-206ENST00000572083 USHBP1Q8N6Y0 703 aa28.03■■■□□ 2.08
CCDC40-206ENST00000572083 C5P01031 1676 aa28.02■■■□□ 2.08
CCDC40-206ENST00000572083 RTL1A6NKG5 1358 aa28.01■■■□□ 2.07
CCDC40-206ENST00000572083 TONSLQ96HA7 1378 aa28.01■■■□□ 2.07
CCDC40-206ENST00000572083 RRS1Q15050 365 aaKnown RBP28.01■■■□□ 2.07
CCDC40-206ENST00000572083 NBPF6Q5VWK0 638 aa28■■■□□ 2.07
CCDC40-206ENST00000572083 NBPF4Q96M43 638 aa28■■■□□ 2.07
CCDC40-206ENST00000572083 TESK2Q96S53 571 aa28■■■□□ 2.07
CCDC40-206ENST00000572083 GRIN3BO60391 1043 aa27.98■■■□□ 2.07
CCDC40-206ENST00000572083 ST20-MTHFSA0A0A6YYL1 179 aa27.97■■■□□ 2.07
CCDC40-206ENST00000572083 SMG6Q86US8 1419 aaKnown RBP27.96■■■□□ 2.07
CCDC40-206ENST00000572083 RAPGEF4Q8WZA2 1011 aa27.95■■■□□ 2.06
CCDC40-206ENST00000572083 CGNL1Q0VF96 1302 aa27.94■■■□□ 2.06
CCDC40-206ENST00000572083 GGNBP2Q9H3C7 697 aa27.94■■■□□ 2.06
CCDC40-206ENST00000572083 ATP10DQ9P241 1426 aa27.93■■■□□ 2.06
CCDC40-206ENST00000572083 TAF1LQ8IZX4 1826 aa27.93■■■□□ 2.06
CCDC40-206ENST00000572083 PALLDQ8WX93 1383 aa27.92■■■□□ 2.06
CCDC40-206ENST00000572083 TATP17735 454 aaPredicted RBP27.92■■■□□ 2.06
CCDC40-206ENST00000572083 PCDH11XQ9BZA7 1347 aa27.91■■■□□ 2.06
CCDC40-206ENST00000572083 PCDH11YQ9BZA8 1340 aa27.91■■■□□ 2.06
CCDC40-206ENST00000572083 TOGARAM1Q9Y4F4 1720 aa27.9■■■□□ 2.06
CCDC40-206ENST00000572083 FYB1O15117 783 aa27.89■■■□□ 2.06
CCDC40-206ENST00000572083 C4BP0C0L5 1744 aa27.88■■■□□ 2.05
CCDC40-206ENST00000572083 MPRIPQ6WCQ1 1025 aa27.88■■■□□ 2.05
CCDC40-206ENST00000572083 CD2APQ9Y5K6 639 aa27.88■■■□□ 2.05
CCDC40-206ENST00000572083 KIF20BQ96Q89 1820 aa27.88■■■□□ 2.05
CCDC40-206ENST00000572083 HSP90AB2PQ58FF8 381 aa27.87■■■□□ 2.05
CCDC40-206ENST00000572083 INSRP06213 1382 aa27.86■■■□□ 2.05
CCDC40-206ENST00000572083 FLAD1Q8NFF5 587 aa27.86■■■□□ 2.05
CCDC40-206ENST00000572083 ITGB4P16144 1822 aa27.85■■■□□ 2.05
CCDC40-206ENST00000572083 FLT4P35916 1363 aa27.85■■■□□ 2.05
CCDC40-206ENST00000572083 CYP27B1O15528 508 aa27.84■■■□□ 2.05
CCDC40-206ENST00000572083 AMIGO3Q86WK7 504 aa27.84■■■□□ 2.05
CCDC40-206ENST00000572083 AK7Q96M32 723 aa27.83■■■□□ 2.05
CCDC40-206ENST00000572083 GPBP1L1Q9HC44 474 aaPredicted RBP27.83■■■□□ 2.05
CCDC40-206ENST00000572083 PKD1L3Q7Z443 1732 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 SLC24A1O60721 1099 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 PHF14O94880 888 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 IFFO2Q5TF58 517 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 SMIM5Q71RC9 77 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 ZNF526Q8TF50 670 aaPredicted RBP27.82■■■□□ 2.04
CCDC40-206ENST00000572083 WWC3Q9ULE0 1092 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 UBR3Q6ZT12 1888 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 ADCY9O60503 1353 aa27.82■■■□□ 2.04
CCDC40-206ENST00000572083 IGSF1Q8N6C5 1336 aa27.78■■■□□ 2.04
CCDC40-206ENST00000572083 HMGB2P26583 209 aaKnown RBP27.78■■■□□ 2.04
CCDC40-206ENST00000572083 TMF1P82094 1093 aa27.78■■■□□ 2.04
CCDC40-206ENST00000572083 SMARCC1Q92922 1105 aaPredicted RBP27.78■■■□□ 2.04
CCDC40-206ENST00000572083 KIF24Q5T7B8 1368 aa27.77■■■□□ 2.04
CCDC40-206ENST00000572083 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.76■■■□□ 2.03
CCDC40-206ENST00000572083 PIGBQ92521 554 aa27.76■■■□□ 2.03
CCDC40-206ENST00000572083 EMILIN1Q9Y6C2 1016 aa27.76■■■□□ 2.03
CCDC40-206ENST00000572083 NSD3Q9BZ95 1437 aa27.75■■■□□ 2.03
CCDC40-206ENST00000572083 MAP2P11137 1827 aaKnown RBP27.74■■■□□ 2.03
CCDC40-206ENST00000572083 LINC00116Q8NCU8 138 aa27.73■■■□□ 2.03
CCDC40-206ENST00000572083 NCAPD2Q15021 1401 aa27.72■■■□□ 2.03
CCDC40-206ENST00000572083 HSPA6P17066 643 aa27.71■■■□□ 2.03
CCDC40-206ENST00000572083 SSFA2P28290 1259 aa27.71■■■□□ 2.03
CCDC40-206ENST00000572083 LOC102724428A0A0B4J2F2 783 aa27.7■■■□□ 2.02
CCDC40-206ENST00000572083 SIK1P57059 783 aa27.7■■■□□ 2.02
CCDC40-206ENST00000572083 ANKRD26Q9UPS8 1709 aa27.7■■■□□ 2.02
CCDC40-206ENST00000572083 PPM1GO15355 546 aaPredicted RBP27.69■■■□□ 2.02
CCDC40-206ENST00000572083 NKX1-1Q15270 411 aaPredicted RBP27.68■■■□□ 2.02
CCDC40-206ENST00000572083 SPG7Q9UQ90 795 aa27.68■■■□□ 2.02
CCDC40-206ENST00000572083 CARD14Q9BXL6 1004 aa27.67■■■□□ 2.02
CCDC40-206ENST00000572083 GNPATO15228 680 aa27.66■■■□□ 2.02
CCDC40-206ENST00000572083 ITPK1Q13572 414 aa27.66■■■□□ 2.02
CCDC40-206ENST00000572083 TMOD3Q9NYL9 352 aa27.66■■■□□ 2.02
CCDC40-206ENST00000572083 ASAP1Q9ULH1 1129 aa27.66■■■□□ 2.02
CCDC40-206ENST00000572083 CICQ96RK0 1608 aaPredicted RBP27.65■■■□□ 2.02
CCDC40-206ENST00000572083 ATP6V1AP38606 617 aa27.63■■■□□ 2.01
CCDC40-206ENST00000572083 CDCA8Q53HL2 280 aa27.63■■■□□ 2.01
CCDC40-206ENST00000572083 EYA1Q99502 592 aa27.62■■■□□ 2.01
CCDC40-206ENST00000572083 KIAA1551Q9HCM1 1747 aa27.61■■■□□ 2.01
CCDC40-206ENST00000572083 PXDNLA1KZ92 1463 aa27.61■■■□□ 2.01
CCDC40-206ENST00000572083 KIF3CO14782 793 aa27.6■■■□□ 2.01
CCDC40-206ENST00000572083 MMP10P09238 476 aa27.6■■■□□ 2.01
CCDC40-206ENST00000572083 PHKG2P15735 406 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms