RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 ANKRD36BQ8N2N9 1353 aa27.16■■□□□ 1.94
NUP88-203ENST00000572019 SLC27A3Q5K4L6 730 aa27.15■■□□□ 1.94
NUP88-203ENST00000572019 PUS7Q96PZ0 661 aaKnown RBP27.15■■□□□ 1.94
NUP88-203ENST00000572019 GOLGB1Q14789 3259 aaKnown RBP27.15■■□□□ 1.94
NUP88-203ENST00000572019 ST20-MTHFSA0A0A6YYL1 179 aa27.14■■□□□ 1.94
NUP88-203ENST00000572019 TONSLQ96HA7 1378 aa27.13■■□□□ 1.93
NUP88-203ENST00000572019 NLGN2Q8NFZ4 835 aa27.13■■□□□ 1.93
NUP88-203ENST00000572019 COG3Q96JB2 828 aa27.12■■□□□ 1.93
NUP88-203ENST00000572019 AMPHP49418 695 aa27.11■■□□□ 1.93
NUP88-203ENST00000572019 RRS1Q15050 365 aaKnown RBP27.11■■□□□ 1.93
NUP88-203ENST00000572019 GPR162Q16538 588 aa27.11■■□□□ 1.93
NUP88-203ENST00000572019 USHBP1Q8N6Y0 703 aa27.11■■□□□ 1.93
NUP88-203ENST00000572019 TFCP2L1Q9NZI6 479 aa27.11■■□□□ 1.93
NUP88-203ENST00000572019 ZCRB1Q8TBF4 217 aaKnown RBP27.1■■□□□ 1.93
NUP88-203ENST00000572019 SLC16A10Q8TF71 515 aa27.1■■□□□ 1.93
NUP88-203ENST00000572019 NBPF6Q5VWK0 638 aa27.09■■□□□ 1.93
NUP88-203ENST00000572019 NBPF4Q96M43 638 aa27.09■■□□□ 1.93
NUP88-203ENST00000572019 PELP1Q8IZL8 1130 aaKnown RBP27.07■■□□□ 1.92
NUP88-203ENST00000572019 C5P01031 1676 aa27.07■■□□□ 1.92
NUP88-203ENST00000572019 TAF1LQ8IZX4 1826 aa27.06■■□□□ 1.92
NUP88-203ENST00000572019 POLD1P28340 1107 aa27.06■■□□□ 1.92
NUP88-203ENST00000572019 C1QTNF8P60827 252 aa27.06■■□□□ 1.92
NUP88-203ENST00000572019 CCNL1Q9UK58 526 aaPredicted RBP27.06■■□□□ 1.92
NUP88-203ENST00000572019 TOGARAM1Q9Y4F4 1720 aa27.05■■□□□ 1.92
NUP88-203ENST00000572019 COL23A1Q86Y22 540 aaPredicted RBP27.05■■□□□ 1.92
NUP88-203ENST00000572019 GGNBP2Q9H3C7 697 aa27.05■■□□□ 1.92
NUP88-203ENST00000572019 KIF20BQ96Q89 1820 aa27.04■■□□□ 1.92
NUP88-203ENST00000572019 SENP3-EIF4A1A0A087X0R7 540 aa27.04■■□□□ 1.92
NUP88-203ENST00000572019 RTL1A6NKG5 1358 aa27.03■■□□□ 1.92
NUP88-203ENST00000572019 FYB1O15117 783 aa27.03■■□□□ 1.92
NUP88-203ENST00000572019 YBX3P16989 372 aaKnown RBP eCLIP27.03■■□□□ 1.92
NUP88-203ENST00000572019 ITGB4P16144 1822 aa27.02■■□□□ 1.92
NUP88-203ENST00000572019 MSL1Q68DK7 614 aa27.01■■□□□ 1.91
NUP88-203ENST00000572019 USP47Q96K76 1375 aa26.99■■□□□ 1.91
NUP88-203ENST00000572019 HSP90AB2PQ58FF8 381 aa26.99■■□□□ 1.91
NUP88-203ENST00000572019 MSH5O43196 834 aa26.98■■□□□ 1.91
NUP88-203ENST00000572019 AMIGO3Q86WK7 504 aa26.96■■□□□ 1.91
NUP88-203ENST00000572019 PKD1L3Q7Z443 1732 aa26.94■■□□□ 1.9
NUP88-203ENST00000572019 SMIM5Q71RC9 77 aa26.94■■□□□ 1.9
NUP88-203ENST00000572019 RAPGEF4Q8WZA2 1011 aa26.94■■□□□ 1.9
NUP88-203ENST00000572019 C4BP0C0L5 1744 aa26.93■■□□□ 1.9
NUP88-203ENST00000572019 CYP27B1O15528 508 aa26.93■■□□□ 1.9
NUP88-203ENST00000572019 INSRP06213 1382 aa26.93■■□□□ 1.9
NUP88-203ENST00000572019 UBR3Q6ZT12 1888 aa26.93■■□□□ 1.9
NUP88-203ENST00000572019 PALLDQ8WX93 1383 aa26.92■■□□□ 1.9
NUP88-203ENST00000572019 CGNL1Q0VF96 1302 aa26.91■■□□□ 1.9
NUP88-203ENST00000572019 SMG6Q86US8 1419 aaKnown RBP26.91■■□□□ 1.9
NUP88-203ENST00000572019 TATP17735 454 aaPredicted RBP26.91■■□□□ 1.9
NUP88-203ENST00000572019 MAP2P11137 1827 aaKnown RBP26.9■■□□□ 1.9
NUP88-203ENST00000572019 GIGYF1O75420 1035 aaPredicted RBP26.9■■□□□ 1.9
NUP88-203ENST00000572019 MPRIPQ6WCQ1 1025 aa26.9■■□□□ 1.9
NUP88-203ENST00000572019 FLT4P35916 1363 aa26.89■■□□□ 1.9
NUP88-203ENST00000572019 CARD14Q9BXL6 1004 aa26.89■■□□□ 1.9
NUP88-203ENST00000572019 PCDH11XQ9BZA7 1347 aa26.89■■□□□ 1.89
NUP88-203ENST00000572019 PCDH11YQ9BZA8 1340 aa26.89■■□□□ 1.89
NUP88-203ENST00000572019 EMILIN1Q9Y6C2 1016 aa26.88■■□□□ 1.89
NUP88-203ENST00000572019 ANKRD26Q9UPS8 1709 aa26.87■■□□□ 1.89
NUP88-203ENST00000572019 TMF1P82094 1093 aa26.87■■□□□ 1.89
NUP88-203ENST00000572019 NCAPD2Q15021 1401 aa26.84■■□□□ 1.89
NUP88-203ENST00000572019 ATP10DQ9P241 1426 aa26.83■■□□□ 1.89
NUP88-203ENST00000572019 NSD3Q9BZ95 1437 aa26.82■■□□□ 1.88
NUP88-203ENST00000572019 GRIN3BO60391 1043 aa26.82■■□□□ 1.88
NUP88-203ENST00000572019 SLC24A1O60721 1099 aa26.82■■□□□ 1.88
NUP88-203ENST00000572019 PIGBQ92521 554 aa26.82■■□□□ 1.88
NUP88-203ENST00000572019 WWC3Q9ULE0 1092 aa26.82■■□□□ 1.88
NUP88-203ENST00000572019 KIF24Q5T7B8 1368 aa26.81■■□□□ 1.88
NUP88-203ENST00000572019 PHF14O94880 888 aa26.8■■□□□ 1.88
NUP88-203ENST00000572019 CD2APQ9Y5K6 639 aa26.8■■□□□ 1.88
NUP88-203ENST00000572019 CEP350Q5VT06 3117 aa26.8■■□□□ 1.88
NUP88-203ENST00000572019 LINC00116Q8NCU8 138 aa26.78■■□□□ 1.88
NUP88-203ENST00000572019 PPM1GO15355 546 aaPredicted RBP26.77■■□□□ 1.88
NUP88-203ENST00000572019 AK7Q96M32 723 aa26.77■■□□□ 1.88
NUP88-203ENST00000572019 ADCY9O60503 1353 aa26.76■■□□□ 1.87
NUP88-203ENST00000572019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.76■■□□□ 1.87
NUP88-203ENST00000572019 NKX1-1Q15270 411 aaPredicted RBP26.76■■□□□ 1.87
NUP88-203ENST00000572019 FLAD1Q8NFF5 587 aa26.76■■□□□ 1.87
NUP88-203ENST00000572019 ITPK1Q13572 414 aa26.74■■□□□ 1.87
NUP88-203ENST00000572019 SMARCC1Q92922 1105 aaPredicted RBP26.74■■□□□ 1.87
NUP88-203ENST00000572019 EYA1Q99502 592 aa26.74■■□□□ 1.87
NUP88-203ENST00000572019 IGSF1Q8N6C5 1336 aa26.73■■□□□ 1.87
NUP88-203ENST00000572019 LOC102724428A0A0B4J2F2 783 aa26.73■■□□□ 1.87
NUP88-203ENST00000572019 SIK1P57059 783 aa26.73■■□□□ 1.87
NUP88-203ENST00000572019 ASAP1Q9ULH1 1129 aa26.73■■□□□ 1.87
NUP88-203ENST00000572019 ZNF526Q8TF50 670 aaPredicted RBP26.72■■□□□ 1.87
NUP88-203ENST00000572019 KIAA1551Q9HCM1 1747 aa26.72■■□□□ 1.87
NUP88-203ENST00000572019 WASHC2AQ641Q2 1341 aa26.7■■□□□ 1.87
NUP88-203ENST00000572019 N4BP2Q86UW6 1770 aaPredicted RBP26.69■■□□□ 1.86
NUP88-203ENST00000572019 KIF13BQ9NQT8 1826 aa26.68■■□□□ 1.86
NUP88-203ENST00000572019 CDCA8Q53HL2 280 aa26.68■■□□□ 1.86
NUP88-203ENST00000572019 POLKQ9UBT6 870 aa26.68■■□□□ 1.86
NUP88-203ENST00000572019 SPG7Q9UQ90 795 aa26.68■■□□□ 1.86
NUP88-203ENST00000572019 SSFA2P28290 1259 aa26.67■■□□□ 1.86
NUP88-203ENST00000572019 TMOD3Q9NYL9 352 aa26.67■■□□□ 1.86
NUP88-203ENST00000572019 GNPATO15228 680 aa26.66■■□□□ 1.86
NUP88-203ENST00000572019 PHKG2P15735 406 aa26.66■■□□□ 1.86
NUP88-203ENST00000572019 GPBP1L1Q9HC44 474 aaPredicted RBP26.66■■□□□ 1.86
NUP88-203ENST00000572019 ATG3Q9NT62 314 aa26.66■■□□□ 1.86
NUP88-203ENST00000572019 ATP6V1AP38606 617 aa26.64■■□□□ 1.86
NUP88-203ENST00000572019 SLC4A9Q96Q91 983 aa26.64■■□□□ 1.86
NUP88-203ENST00000572019 COL5A3P25940 1745 aaPredicted RBP26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms