RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 PNPLA7Q6ZV29 1317 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 ST20-MTHFSA0A0A6YYL1 179 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 HOXC9P31274 260 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 USHBP1Q8N6Y0 703 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 AKT1S1Q96B36 256 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 TESK2Q96S53 571 aa17.06■□□□□ 0.32
CAPN3-220ENST00000569827 TOGARAM1Q9Y4F4 1720 aa17.05■□□□□ 0.32
CAPN3-220ENST00000569827 PRIM1P49642 420 aaKnown RBP17.05■□□□□ 0.32
CAPN3-220ENST00000569827 RRS1Q15050 365 aaKnown RBP17.05■□□□□ 0.32
CAPN3-220ENST00000569827 COG3Q96JB2 828 aa17.05■□□□□ 0.32
CAPN3-220ENST00000569827 AMPHP49418 695 aa17.04■□□□□ 0.32
CAPN3-220ENST00000569827 PELP1Q8IZL8 1130 aaKnown RBP17.04■□□□□ 0.32
CAPN3-220ENST00000569827 ANKRD36BQ8N2N9 1353 aa17.02■□□□□ 0.32
CAPN3-220ENST00000569827 GGNBP2Q9H3C7 697 aa17.02■□□□□ 0.32
CAPN3-220ENST00000569827 TFCP2L1Q9NZI6 479 aa17.02■□□□□ 0.32
CAPN3-220ENST00000569827 GPR162Q16538 588 aa17.01■□□□□ 0.31
CAPN3-220ENST00000569827 NLGN2Q8NFZ4 835 aa17.01■□□□□ 0.31
CAPN3-220ENST00000569827 MAP3K5Q99683 1374 aa17.01■□□□□ 0.31
CAPN3-220ENST00000569827 NBPF6Q5VWK0 638 aa17■□□□□ 0.31
CAPN3-220ENST00000569827 ZCRB1Q8TBF4 217 aaKnown RBP17■□□□□ 0.31
CAPN3-220ENST00000569827 NBPF4Q96M43 638 aa17■□□□□ 0.31
CAPN3-220ENST00000569827 MAP2P11137 1827 aaKnown RBP16.99■□□□□ 0.31
CAPN3-220ENST00000569827 SLC27A3Q5K4L6 730 aa16.99■□□□□ 0.31
CAPN3-220ENST00000569827 MSH5O43196 834 aa16.98■□□□□ 0.31
CAPN3-220ENST00000569827 POLD1P28340 1107 aa16.98■□□□□ 0.31
CAPN3-220ENST00000569827 MSL1Q68DK7 614 aa16.98■□□□□ 0.31
CAPN3-220ENST00000569827 CCNL1Q9UK58 526 aaPredicted RBP16.98■□□□□ 0.31
CAPN3-220ENST00000569827 UBR3Q6ZT12 1888 aa16.97■□□□□ 0.31
CAPN3-220ENST00000569827 PKD1L3Q7Z443 1732 aa16.97■□□□□ 0.31
CAPN3-220ENST00000569827 PUS7Q96PZ0 661 aaKnown RBP16.97■□□□□ 0.31
CAPN3-220ENST00000569827 FYB1O15117 783 aa16.96■□□□□ 0.31
CAPN3-220ENST00000569827 RTL1A6NKG5 1358 aa16.96■□□□□ 0.31
CAPN3-220ENST00000569827 USP47Q96K76 1375 aa16.95■□□□□ 0.3
CAPN3-220ENST00000569827 SENP3-EIF4A1A0A087X0R7 540 aa16.95■□□□□ 0.3
CAPN3-220ENST00000569827 HSP90AB2PQ58FF8 381 aa16.95■□□□□ 0.3
CAPN3-220ENST00000569827 COL23A1Q86Y22 540 aaPredicted RBP16.95■□□□□ 0.3
CAPN3-220ENST00000569827 SLC16A10Q8TF71 515 aa16.95■□□□□ 0.3
CAPN3-220ENST00000569827 C4BP0C0L5 1744 aa16.95■□□□□ 0.3
CAPN3-220ENST00000569827 ANKRD26Q9UPS8 1709 aa16.94■□□□□ 0.3
CAPN3-220ENST00000569827 SMG6Q86US8 1419 aaKnown RBP16.94■□□□□ 0.3
CAPN3-220ENST00000569827 YBX3P16989 372 aaKnown RBP eCLIP16.93■□□□□ 0.3
CAPN3-220ENST00000569827 SMIM5Q71RC9 77 aa16.93■□□□□ 0.3
CAPN3-220ENST00000569827 RAPGEF4Q8WZA2 1011 aa16.93■□□□□ 0.3
CAPN3-220ENST00000569827 CEP350Q5VT06 3117 aa16.92■□□□□ 0.3
CAPN3-220ENST00000569827 TATP17735 454 aaPredicted RBP16.91■□□□□ 0.3
CAPN3-220ENST00000569827 C1QTNF8P60827 252 aa16.91■□□□□ 0.3
CAPN3-220ENST00000569827 MPRIPQ6WCQ1 1025 aa16.91■□□□□ 0.3
CAPN3-220ENST00000569827 TMF1P82094 1093 aa16.9■□□□□ 0.3
CAPN3-220ENST00000569827 AMIGO3Q86WK7 504 aa16.9■□□□□ 0.3
CAPN3-220ENST00000569827 EMILIN1Q9Y6C2 1016 aa16.9■□□□□ 0.3
CAPN3-220ENST00000569827 INSRP06213 1382 aa16.89■□□□□ 0.3
CAPN3-220ENST00000569827 FLT4P35916 1363 aa16.89■□□□□ 0.3
CAPN3-220ENST00000569827 PALLDQ8WX93 1383 aa16.89■□□□□ 0.3
CAPN3-220ENST00000569827 WWC3Q9ULE0 1092 aa16.89■□□□□ 0.29
CAPN3-220ENST00000569827 PCDH11XQ9BZA7 1347 aa16.89■□□□□ 0.29
CAPN3-220ENST00000569827 PCDH11YQ9BZA8 1340 aa16.89■□□□□ 0.29
CAPN3-220ENST00000569827 NSD3Q9BZ95 1437 aa16.88■□□□□ 0.29
CAPN3-220ENST00000569827 CYP27B1O15528 508 aa16.88■□□□□ 0.29
CAPN3-220ENST00000569827 PPM1GO15355 546 aaPredicted RBP16.87■□□□□ 0.29
CAPN3-220ENST00000569827 CARD14Q9BXL6 1004 aa16.87■□□□□ 0.29
CAPN3-220ENST00000569827 GIGYF1O75420 1035 aaPredicted RBP16.86■□□□□ 0.29
CAPN3-220ENST00000569827 PHF14O94880 888 aa16.86■□□□□ 0.29
CAPN3-220ENST00000569827 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
CAPN3-220ENST00000569827 N4BP2Q86UW6 1770 aaPredicted RBP16.84■□□□□ 0.29
CAPN3-220ENST00000569827 ATP10DQ9P241 1426 aa16.82■□□□□ 0.28
CAPN3-220ENST00000569827 PIGBQ92521 554 aa16.82■□□□□ 0.28
CAPN3-220ENST00000569827 AK7Q96M32 723 aa16.82■□□□□ 0.28
CAPN3-220ENST00000569827 NCAPD2Q15021 1401 aa16.81■□□□□ 0.28
CAPN3-220ENST00000569827 LINC00116Q8NCU8 138 aa16.81■□□□□ 0.28
CAPN3-220ENST00000569827 POLR3GLQ9BT43 218 aa16.81■□□□□ 0.28
CAPN3-220ENST00000569827 KIAA1551Q9HCM1 1747 aa16.8■□□□□ 0.28
CAPN3-220ENST00000569827 ZNF526Q8TF50 670 aaPredicted RBP16.8■□□□□ 0.28
CAPN3-220ENST00000569827 VIRMAQ69YN4 1812 aaKnown RBP16.8■□□□□ 0.28
CAPN3-220ENST00000569827 COL5A3P25940 1745 aaPredicted RBP16.79■□□□□ 0.28
CAPN3-220ENST00000569827 KIF24Q5T7B8 1368 aa16.79■□□□□ 0.28
CAPN3-220ENST00000569827 MYH14Q7Z406 1995 aaKnown RBP16.79■□□□□ 0.28
CAPN3-220ENST00000569827 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.79■□□□□ 0.28
CAPN3-220ENST00000569827 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
CAPN3-220ENST00000569827 TNNT2P45379 298 aaPredicted RBP16.79■□□□□ 0.28
CAPN3-220ENST00000569827 KIF13BQ9NQT8 1826 aa16.78■□□□□ 0.28
CAPN3-220ENST00000569827 GRIN3BO60391 1043 aa16.78■□□□□ 0.28
CAPN3-220ENST00000569827 EYA1Q99502 592 aa16.78■□□□□ 0.28
CAPN3-220ENST00000569827 C4AP0C0L4 1744 aa16.78■□□□□ 0.28
CAPN3-220ENST00000569827 IGSF1Q8N6C5 1336 aa16.77■□□□□ 0.28
CAPN3-220ENST00000569827 ITPK1Q13572 414 aa16.77■□□□□ 0.28
CAPN3-220ENST00000569827 SMARCC1Q92922 1105 aaPredicted RBP16.77■□□□□ 0.28
CAPN3-220ENST00000569827 ASAP1Q9ULH1 1129 aa16.77■□□□□ 0.28
CAPN3-220ENST00000569827 CD2APQ9Y5K6 639 aa16.77■□□□□ 0.28
CAPN3-220ENST00000569827 LOC102724428A0A0B4J2F2 783 aa16.76■□□□□ 0.27
CAPN3-220ENST00000569827 SIK1P57059 783 aa16.76■□□□□ 0.27
CAPN3-220ENST00000569827 CDCA8Q53HL2 280 aa16.76■□□□□ 0.27
CAPN3-220ENST00000569827 GNPATO15228 680 aa16.75■□□□□ 0.27
CAPN3-220ENST00000569827 FLAD1Q8NFF5 587 aa16.75■□□□□ 0.27
CAPN3-220ENST00000569827 TMOD3Q9NYL9 352 aa16.75■□□□□ 0.27
CAPN3-220ENST00000569827 SPG7Q9UQ90 795 aa16.75■□□□□ 0.27
CAPN3-220ENST00000569827 BRCA1P38398 1863 aaKnown RBP16.75■□□□□ 0.27
CAPN3-220ENST00000569827 CICQ96RK0 1608 aaPredicted RBP16.74■□□□□ 0.27
CAPN3-220ENST00000569827 WASHC2AQ641Q2 1341 aa16.74■□□□□ 0.27
CAPN3-220ENST00000569827 NKX1-1Q15270 411 aaPredicted RBP16.74■□□□□ 0.27
CAPN3-220ENST00000569827 POLKQ9UBT6 870 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms