RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 AMER1Q5JTC6 1135 aaPredicted RBP12.29□□□□□ -0.44
GTF3C1-210ENST00000569394 CDCA7Q9BWT1 371 aaPredicted RBP12.29□□□□□ -0.44
GTF3C1-210ENST00000569394 RTL1A6NKG5 1358 aa12.29□□□□□ -0.44
GTF3C1-210ENST00000569394 DISP2A7MBM2 1401 aa12.28□□□□□ -0.44
GTF3C1-210ENST00000569394 INSRP06213 1382 aa12.28□□□□□ -0.44
GTF3C1-210ENST00000569394 RGPD1P0DJD0 1748 aa12.28□□□□□ -0.44
GTF3C1-210ENST00000569394 PER1O15534 1290 aaPredicted RBP12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 KCNQ2O43526 872 aa12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 EIF4A2Q14240 407 aaKnown RBP12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 RAPGEF4Q8WZA2 1011 aa12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 SYTL4Q96C24 671 aaPredicted RBP12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 OVOS2A0A0G2JMS6 1433 aa12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 MEGF6O75095 1541 aa12.27□□□□□ -0.45
GTF3C1-210ENST00000569394 FAM208AQ9UK61 1670 aaKnown RBP12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 PSDA5PKW4 1024 aaPredicted RBP12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 TATP17735 454 aaPredicted RBP12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 ZCRB1Q8TBF4 217 aaKnown RBP12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 EYA1Q99502 592 aa12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 NSD2O96028 1365 aa12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 TNS2Q63HR2 1409 aa12.26□□□□□ -0.45
GTF3C1-210ENST00000569394 TNS1Q9HBL0 1735 aaKnown RBP12.25□□□□□ -0.45
GTF3C1-210ENST00000569394 MTHFSP49914 203 aa12.25□□□□□ -0.45
GTF3C1-210ENST00000569394 DDX10Q13206 875 aaKnown RBP12.25□□□□□ -0.45
GTF3C1-210ENST00000569394 SBF2Q86WG5 1849 aa12.25□□□□□ -0.45
GTF3C1-210ENST00000569394 AEBP1Q8IUX7 1158 aa12.23□□□□□ -0.45
GTF3C1-210ENST00000569394 KIF24Q5T7B8 1368 aa12.22□□□□□ -0.45
GTF3C1-210ENST00000569394 SAMD1Q6SPF0 538 aaPredicted RBP12.22□□□□□ -0.45
GTF3C1-210ENST00000569394 HMOX1P09601 288 aa12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 ZEB1P37275 1124 aaPredicted RBP12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 PRIM1P49642 420 aaKnown RBP12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 R3HDM1Q15032 1099 aaKnown RBP12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 CAMKK2Q96RR4 588 aa12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 BCL11BQ9C0K0 894 aaPredicted RBP12.21□□□□□ -0.45
GTF3C1-210ENST00000569394 SHANK3Q9BYB0 1731 aa12.2□□□□□ -0.46
GTF3C1-210ENST00000569394 U2SURPO15042 1029 aaKnown RBP12.2□□□□□ -0.46
GTF3C1-210ENST00000569394 KCNQ4P56696 695 aa12.2□□□□□ -0.46
GTF3C1-210ENST00000569394 SULT6B1Q6IMI4 303 aa12.2□□□□□ -0.46
GTF3C1-210ENST00000569394 SRCAPQ6ZRS2 3230 aa12.19□□□□□ -0.46
GTF3C1-210ENST00000569394 DOT1LQ8TEK3 1739 aa12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 CYP27B1O15528 508 aa12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 DIAPH1O60610 1272 aaKnown RBP12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 IL13P35225 146 aa12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 MPRIPQ6WCQ1 1025 aa12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 SPG7Q9UQ90 795 aa12.18□□□□□ -0.46
GTF3C1-210ENST00000569394 PCDH11XQ9BZA7 1347 aa12.17□□□□□ -0.46
GTF3C1-210ENST00000569394 PCDH11YQ9BZA8 1340 aa12.17□□□□□ -0.46
GTF3C1-210ENST00000569394 NHSQ6T4R5 1651 aa12.16□□□□□ -0.46
GTF3C1-210ENST00000569394 BTAF1O14981 1849 aa12.16□□□□□ -0.46
GTF3C1-210ENST00000569394 IGSF1Q8N6C5 1336 aa12.16□□□□□ -0.46
GTF3C1-210ENST00000569394 PPP2R1AP30153 589 aa12.16□□□□□ -0.46
GTF3C1-210ENST00000569394 TXNRD1Q16881 649 aa12.16□□□□□ -0.46
GTF3C1-210ENST00000569394 ZNF530Q6P9A1 599 aaPredicted RBP12.15□□□□□ -0.46
GTF3C1-210ENST00000569394 PROM2Q8N271 834 aa12.15□□□□□ -0.46
GTF3C1-210ENST00000569394 NUP188Q5SRE5 1749 aa12.14□□□□□ -0.47
GTF3C1-210ENST00000569394 PLEKHO1Q53GL0 409 aaPredicted RBP12.14□□□□□ -0.47
GTF3C1-210ENST00000569394 NBPF14Q5TI25 921 aa12.14□□□□□ -0.47
GTF3C1-210ENST00000569394 IFNL2Q8IZJ0 200 aa12.14□□□□□ -0.47
GTF3C1-210ENST00000569394 RREB1Q92766 1687 aa12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 PLSCR1O15162 318 aa12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 PHKG2P15735 406 aa12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 CFAP53Q96M91 514 aa12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 NPC1L1Q9UHC9 1359 aa12.13□□□□□ -0.47
GTF3C1-210ENST00000569394 PKD1L3Q7Z443 1732 aa12.12□□□□□ -0.47
GTF3C1-210ENST00000569394 BCL9O00512 1426 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 TOGARAM1Q9Y4F4 1720 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 C1orf141Q5JVX7 400 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 PDGFDQ9GZP0 370 aaPredicted RBP12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 LRRC4BQ9NT99 713 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 ITGB4P16144 1822 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 NCAPD2Q15021 1401 aa12.11□□□□□ -0.47
GTF3C1-210ENST00000569394 PARD3Q8TEW0 1356 aa12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 U2AF1L5P0DN76 240 aaPredicted RBP12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 U2AF1Q01081 240 aaKnown RBP eCLIP12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 PIGBQ92521 554 aa12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 STK32BQ9NY57 414 aa12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 TMOD3Q9NYL9 352 aa12.1□□□□□ -0.47
GTF3C1-210ENST00000569394 COL3A1P02461 1466 aaPredicted RBP12.09□□□□□ -0.47
GTF3C1-210ENST00000569394 CABP4P57796 275 aa12.09□□□□□ -0.47
GTF3C1-210ENST00000569394 MTHFSDQ2M296 383 aaKnown RBP12.09□□□□□ -0.47
GTF3C1-210ENST00000569394 AMOTQ4VCS5 1084 aa12.09□□□□□ -0.47
GTF3C1-210ENST00000569394 CCNL1Q9UK58 526 aaPredicted RBP12.09□□□□□ -0.47
GTF3C1-210ENST00000569394 LRP5O75197 1615 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 PRKAR2BP31323 418 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 ZNF827Q17R98 1081 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 LGR6Q9HBX8 967 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.08□□□□□ -0.482e-6■□□□□ 9.5
GTF3C1-210ENST00000569394 ASAP1Q9ULH1 1129 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 NUDCQ9Y266 331 aa12.08□□□□□ -0.48
GTF3C1-210ENST00000569394 ZBTB7AO95365 584 aa12.07□□□□□ -0.48
GTF3C1-210ENST00000569394 NKX1-1Q15270 411 aaPredicted RBP12.07□□□□□ -0.48
GTF3C1-210ENST00000569394 SLC15A2Q16348 729 aa12.07□□□□□ -0.48
GTF3C1-210ENST00000569394 SMIM5Q71RC9 77 aa12.07□□□□□ -0.48
GTF3C1-210ENST00000569394 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
GTF3C1-210ENST00000569394 PALLDQ8WX93 1383 aa12.06□□□□□ -0.48
GTF3C1-210ENST00000569394 NFATC2IPQ8NCF5 419 aa12.06□□□□□ -0.48
GTF3C1-210ENST00000569394 PHACTR3Q96KR7 559 aa12.06□□□□□ -0.48
GTF3C1-210ENST00000569394 KDRP35968 1356 aa12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 RGPD3A6NKT7 1758 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms