RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 KCNH5Q8NCM2 988 aa16.6■□□□□ 0.25
CDH3-208ENST00000569036 CCNL1Q9UK58 526 aaPredicted RBP16.6■□□□□ 0.25
CDH3-208ENST00000569036 SRPK2P78362 688 aaKnown RBP16.58■□□□□ 0.24
CDH3-208ENST00000569036 NLRP2Q9NX02 1062 aa16.58■□□□□ 0.24
CDH3-208ENST00000569036 KDM2AQ9Y2K7 1162 aa16.58■□□□□ 0.24
CDH3-208ENST00000569036 ERBB3P21860 1342 aa16.58■□□□□ 0.24
CDH3-208ENST00000569036 ANKRD36BQ8N2N9 1353 aa16.57■□□□□ 0.24
CDH3-208ENST00000569036 SYTL4Q96C24 671 aaPredicted RBP16.57■□□□□ 0.24
CDH3-208ENST00000569036 PRIM1P49642 420 aaKnown RBP16.56■□□□□ 0.24
CDH3-208ENST00000569036 CABP2Q9NPB3 220 aa16.56■□□□□ 0.24
CDH3-208ENST00000569036 TAF1LQ8IZX4 1826 aa16.56■□□□□ 0.24
CDH3-208ENST00000569036 PKD1L3Q7Z443 1732 aa16.56■□□□□ 0.24
CDH3-208ENST00000569036 KIAA1551Q9HCM1 1747 aa16.56■□□□□ 0.24
CDH3-208ENST00000569036 C10orf71Q711Q0 1435 aa16.54■□□□□ 0.24
CDH3-208ENST00000569036 TOGARAM1Q9Y4F4 1720 aa16.54■□□□□ 0.24
CDH3-208ENST00000569036 DDX54Q8TDD1 881 aaKnown RBP16.54■□□□□ 0.24
CDH3-208ENST00000569036 DCAF11Q8TEB1 546 aa16.54■□□□□ 0.24
CDH3-208ENST00000569036 CABP1Q9NZU7 370 aa16.54■□□□□ 0.24
CDH3-208ENST00000569036 TNRC6CQ9HCJ0 1690 aaKnown RBP16.53■□□□□ 0.24
CDH3-208ENST00000569036 FAM161AQ3B820 660 aa16.53■□□□□ 0.24
CDH3-208ENST00000569036 FLAD1Q8NFF5 587 aa16.53■□□□□ 0.24
CDH3-208ENST00000569036 KCPQ6ZWJ8 1503 aa16.53■□□□□ 0.24
CDH3-208ENST00000569036 N4BP2Q86UW6 1770 aaPredicted RBP16.53■□□□□ 0.24
CDH3-208ENST00000569036 KIF13BQ9NQT8 1826 aa16.52■□□□□ 0.24
CDH3-208ENST00000569036 LTN1O94822 1766 aa16.52■□□□□ 0.24
CDH3-208ENST00000569036 PXDNLA1KZ92 1463 aa16.52■□□□□ 0.23
CDH3-208ENST00000569036 PLEKHG2Q9H7P9 1386 aa16.51■□□□□ 0.23
CDH3-208ENST00000569036 TTC21BQ7Z4L5 1316 aa16.51■□□□□ 0.23
CDH3-208ENST00000569036 UBR3Q6ZT12 1888 aa16.5■□□□□ 0.23
CDH3-208ENST00000569036 SMC1BQ8NDV3 1235 aa16.5■□□□□ 0.23
CDH3-208ENST00000569036 USP47Q96K76 1375 aa16.5■□□□□ 0.23
CDH3-208ENST00000569036 C4BP0C0L5 1744 aa16.49■□□□□ 0.23
CDH3-208ENST00000569036 ARHGAP27Q6ZUM4 889 aa16.49■□□□□ 0.23
CDH3-208ENST00000569036 AMIGO3Q86WK7 504 aa16.48■□□□□ 0.23
CDH3-208ENST00000569036 ANKRD24Q8TF21 1146 aa16.48■□□□□ 0.23
CDH3-208ENST00000569036 BCS1LQ9Y276 419 aa16.48■□□□□ 0.23
CDH3-208ENST00000569036 KDM2BQ8NHM5 1336 aa16.47■□□□□ 0.23
CDH3-208ENST00000569036 C9orf131Q5VYM1 1079 aa16.47■□□□□ 0.23
CDH3-208ENST00000569036 BRCA1P38398 1863 aaKnown RBP16.47■□□□□ 0.23
CDH3-208ENST00000569036 TTC21AQ8NDW8 1320 aa16.46■□□□□ 0.23
CDH3-208ENST00000569036 STAC3Q96MF2 364 aa16.46■□□□□ 0.23
CDH3-208ENST00000569036 RRAGCQ9HB90 399 aa16.46■□□□□ 0.23
CDH3-208ENST00000569036 KIAA1210Q9ULL0 1709 aa16.45■□□□□ 0.22
CDH3-208ENST00000569036 FAM208AQ9UK61 1670 aaKnown RBP16.45■□□□□ 0.22
CDH3-208ENST00000569036 ARFGEF1Q9Y6D6 1849 aa16.45■□□□□ 0.22
CDH3-208ENST00000569036 SMIM5Q71RC9 77 aa16.44■□□□□ 0.22
CDH3-208ENST00000569036 PHF14O94880 888 aa16.43■□□□□ 0.22
CDH3-208ENST00000569036 PRDM10Q9NQV6 1147 aa16.43■□□□□ 0.22
CDH3-208ENST00000569036 CENPJQ9HC77 1338 aaPredicted RBP16.43■□□□□ 0.22
CDH3-208ENST00000569036 FOXN1O15353 648 aa16.42■□□□□ 0.22
CDH3-208ENST00000569036 AK7Q96M32 723 aa16.42■□□□□ 0.22
CDH3-208ENST00000569036 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.41■□□□□ 0.22
CDH3-208ENST00000569036 A0A0G2JLW4 131 aa16.41■□□□□ 0.22
CDH3-208ENST00000569036 NSD3Q9BZ95 1437 aa16.41■□□□□ 0.22
CDH3-208ENST00000569036 PALLDQ8WX93 1383 aa16.4■□□□□ 0.22
CDH3-208ENST00000569036 TGFB2P61812 414 aa16.4■□□□□ 0.22
CDH3-208ENST00000569036 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
CDH3-208ENST00000569036 SBF1O95248 1867 aa16.39■□□□□ 0.22
CDH3-208ENST00000569036 MON2Q7Z3U7 1717 aa16.39■□□□□ 0.21
CDH3-208ENST00000569036 FCHSD2O94868 740 aa16.39■□□□□ 0.21
CDH3-208ENST00000569036 HMGB2P26583 209 aaKnown RBP16.39■□□□□ 0.21
CDH3-208ENST00000569036 MMP10P09238 476 aa16.38■□□□□ 0.21
CDH3-208ENST00000569036 RNF181Q9P0P0 153 aa16.38■□□□□ 0.21
CDH3-208ENST00000569036 MEGF6O75095 1541 aa16.38■□□□□ 0.21
CDH3-208ENST00000569036 USP31Q70CQ4 1352 aa16.38■□□□□ 0.21
CDH3-208ENST00000569036 SSFA2P28290 1259 aa16.37■□□□□ 0.21
CDH3-208ENST00000569036 ZCRB1Q8TBF4 217 aaKnown RBP16.37■□□□□ 0.21
CDH3-208ENST00000569036 ABHD8Q96I13 439 aa16.37■□□□□ 0.21
CDH3-208ENST00000569036 RGPD2P0DJD1 1756 aa16.36■□□□□ 0.21
CDH3-208ENST00000569036 DPEP1P16444 411 aa16.36■□□□□ 0.21
CDH3-208ENST00000569036 MLLT1Q03111 559 aaPredicted RBP16.36■□□□□ 0.21
CDH3-208ENST00000569036 NBPF1Q3BBV0 1214 aa16.36■□□□□ 0.21
CDH3-208ENST00000569036 KTN1Q86UP2 1357 aaKnown RBP16.36■□□□□ 0.21
CDH3-208ENST00000569036 CTCFP49711 727 aaPredicted RBP16.34■□□□□ 0.21
CDH3-208ENST00000569036 MKRN1Q9UHC7 482 aaKnown RBP16.34■□□□□ 0.21
CDH3-208ENST00000569036 LTV1Q96GA3 475 aaPredicted RBP16.33■□□□□ 0.2
CDH3-208ENST00000569036 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.2
CDH3-208ENST00000569036 TNRC18O15417 2968 aaPredicted RBP16.32■□□□□ 0.2
CDH3-208ENST00000569036 C4AP0C0L4 1744 aa16.32■□□□□ 0.2
CDH3-208ENST00000569036 ITGB4P16144 1822 aa16.32■□□□□ 0.2
CDH3-208ENST00000569036 EVC2Q86UK5 1308 aa16.32■□□□□ 0.2
CDH3-208ENST00000569036 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.32■□□□□ 0.2
CDH3-208ENST00000569036 DCAF5Q96JK2 942 aa16.32■□□□□ 0.2
CDH3-208ENST00000569036 VEGFAP15692 232 aaPredicted RBP16.31■□□□□ 0.2
CDH3-208ENST00000569036 KCNA3P22001 575 aa16.31■□□□□ 0.2
CDH3-208ENST00000569036 RGS19P49795 217 aa16.31■□□□□ 0.2
CDH3-208ENST00000569036 NME9Q86XW9 330 aa16.31■□□□□ 0.2
CDH3-208ENST00000569036 LINC00116Q8NCU8 138 aa16.3■□□□□ 0.2
CDH3-208ENST00000569036 IP6K1Q92551 441 aa16.3■□□□□ 0.2
CDH3-208ENST00000569036 AIDAQ96BJ3 306 aa16.3■□□□□ 0.2
CDH3-208ENST00000569036 CREBZFQ9NS37 354 aa16.3■□□□□ 0.2
CDH3-208ENST00000569036 ZC3H4Q9UPT8 1303 aaKnown RBP16.29■□□□□ 0.2
CDH3-208ENST00000569036 CNTNAP1P78357 1384 aa16.28■□□□□ 0.2
CDH3-208ENST00000569036 LBX1P52954 281 aa16.28■□□□□ 0.2
CDH3-208ENST00000569036 MPRIPQ6WCQ1 1025 aa16.28■□□□□ 0.2
CDH3-208ENST00000569036 SMARCC1Q92922 1105 aaPredicted RBP16.28■□□□□ 0.2
CDH3-208ENST00000569036 CCDC87Q9NVE4 849 aa16.28■□□□□ 0.2
CDH3-208ENST00000569036 TIAM2Q8IVF5 1701 aa16.28■□□□□ 0.2
CDH3-208ENST00000569036 VIRMAQ69YN4 1812 aaKnown RBP16.27■□□□□ 0.2
CDH3-208ENST00000569036 GNPATO15228 680 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms