RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 U2AF1L5P0DN76 240 aaPredicted RBP11.28□□□□□ -0.6
SF3B3-212ENST00000568539 U2AF1Q01081 240 aaKnown RBP eCLIP11.28□□□□□ -0.6
SF3B3-212ENST00000568539 TOM1L2Q6ZVM7 507 aa11.28□□□□□ -0.6
SF3B3-212ENST00000568539 NLRP2Q9NX02 1062 aa11.28□□□□□ -0.6
SF3B3-212ENST00000568539 ADAMTS8Q9UP79 889 aa11.28□□□□□ -0.6
SF3B3-212ENST00000568539 NRAPQ86VF7 1730 aa11.28□□□□□ -0.6
SF3B3-212ENST00000568539 KDRP35968 1356 aa11.28□□□□□ -0.6
SF3B3-212ENST00000568539 RGPD1P0DJD0 1748 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 NWD2Q9ULI1 1742 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 VPS72Q15906 364 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 SULT6B1Q6IMI4 303 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 AEBP1Q8IUX7 1158 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 USHBP1Q8N6Y0 703 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 CARD10Q9BWT7 1032 aa11.27□□□□□ -0.61
SF3B3-212ENST00000568539 HMOX1P09601 288 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 FAM9BQ8IZU0 186 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 RSPH6AQ9H0K4 717 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 SPATA31A1Q5TZJ5 1347 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 SPATA31A5Q5VU36 1347 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 SPATA31A7Q8IWB4 1347 aa11.26□□□□□ -0.61
SF3B3-212ENST00000568539 FCHSD2O94868 740 aa11.25□□□□□ -0.61
SF3B3-212ENST00000568539 ATRNO75882 1429 aa11.25□□□□□ -0.61
SF3B3-212ENST00000568539 FAM208AQ9UK61 1670 aaKnown RBP11.24□□□□□ -0.61
SF3B3-212ENST00000568539 RXRBP28702 533 aa11.24□□□□□ -0.61
SF3B3-212ENST00000568539 ZNF772Q68DY9 489 aaPredicted RBP11.24□□□□□ -0.61
SF3B3-212ENST00000568539 TCP11L2Q8N4U5 519 aa11.24□□□□□ -0.61
SF3B3-212ENST00000568539 PLEKHF1Q96S99 279 aa11.24□□□□□ -0.61
SF3B3-212ENST00000568539 USP35Q9P2H5 1018 aa11.24□□□□□ -0.61
SF3B3-212ENST00000568539 TRPC5Q9UL62 973 aaPredicted RBP11.24□□□□□ -0.61
SF3B3-212ENST00000568539 RGPD5Q99666 1765 aa11.23□□□□□ -0.61
SF3B3-212ENST00000568539 PRKAR2BP31323 418 aa11.23□□□□□ -0.61
SF3B3-212ENST00000568539 THRAP3Q9Y2W1 955 aaKnown RBP11.23□□□□□ -0.61
SF3B3-212ENST00000568539 CCDC9Q9Y3X0 531 aaKnown RBP11.23□□□□□ -0.61
SF3B3-212ENST00000568539 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.23□□□□□ -0.61
SF3B3-212ENST00000568539 DISP2A7MBM2 1401 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 MEGF6O75095 1541 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 IL2RBP14784 551 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 BARGINQ6ZT62 677 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 CCDC146Q8IYE0 955 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 RAPGEF4Q8WZA2 1011 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 GJD4Q96KN9 370 aaPredicted RBP11.22□□□□□ -0.61
SF3B3-212ENST00000568539 PNNQ9H307 717 aaKnown RBP11.22□□□□□ -0.61
SF3B3-212ENST00000568539 PLEKHG2Q9H7P9 1386 aa11.22□□□□□ -0.61
SF3B3-212ENST00000568539 QTRT2Q9H974 415 aaKnown RBP11.22□□□□□ -0.61
SF3B3-212ENST00000568539 OVOS2A0A0G2JMS6 1433 aa11.21□□□□□ -0.61
SF3B3-212ENST00000568539 RUNDC1Q96C34 613 aa11.21□□□□□ -0.61
SF3B3-212ENST00000568539 PHACTR3Q96KR7 559 aa11.21□□□□□ -0.61
SF3B3-212ENST00000568539 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
SF3B3-212ENST00000568539 GLI3P10071 1580 aa11.2□□□□□ -0.62
SF3B3-212ENST00000568539 MAPK8IP3Q9UPT6 1336 aa11.19□□□□□ -0.62
SF3B3-212ENST00000568539 ONECUT3O60422 494 aaPredicted RBP11.19□□□□□ -0.62
SF3B3-212ENST00000568539 FAM98CQ17RN3 349 aaKnown RBP11.19□□□□□ -0.62
SF3B3-212ENST00000568539 CDCA7Q9BWT1 371 aaPredicted RBP11.19□□□□□ -0.62
SF3B3-212ENST00000568539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.19□□□□□ -0.629e-16■□□□□ 8.7
SF3B3-212ENST00000568539 RGPD2P0DJD1 1756 aa11.18□□□□□ -0.62
SF3B3-212ENST00000568539 NEFMP07197 916 aa11.18□□□□□ -0.62
SF3B3-212ENST00000568539 MTHFSDQ2M296 383 aaKnown RBP11.18□□□□□ -0.62
SF3B3-212ENST00000568539 AMOTQ4VCS5 1084 aa11.18□□□□□ -0.62
SF3B3-212ENST00000568539 PLEKHO1Q53GL0 409 aaPredicted RBP11.18□□□□□ -0.62
SF3B3-212ENST00000568539 APAF1O14727 1248 aa11.17□□□□□ -0.62
SF3B3-212ENST00000568539 RBM6P78332 1123 aaKnown RBP11.17□□□□□ -0.62
SF3B3-212ENST00000568539 ZCRB1Q8TBF4 217 aaKnown RBP11.17□□□□□ -0.62
SF3B3-212ENST00000568539 SPG7Q9UQ90 795 aa11.17□□□□□ -0.62
SF3B3-212ENST00000568539 TMPOP42166 694 aaKnown RBP11.16□□□□□ -0.62
SF3B3-212ENST00000568539 NFE2L2Q16236 605 aa11.16□□□□□ -0.62
SF3B3-212ENST00000568539 GAS2L2Q8NHY3 880 aa11.16□□□□□ -0.62
SF3B3-212ENST00000568539 TNS2Q63HR2 1409 aa11.16□□□□□ -0.62
SF3B3-212ENST00000568539 THSD7AQ9UPZ6 1657 aa11.15□□□□□ -0.62
SF3B3-212ENST00000568539 EXOC5O00471 708 aa11.15□□□□□ -0.62
SF3B3-212ENST00000568539 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.62
SF3B3-212ENST00000568539 DDB1Q16531 1140 aa11.15□□□□□ -0.62
SF3B3-212ENST00000568539 ZNF530Q6P9A1 599 aaPredicted RBP11.15□□□□□ -0.62
SF3B3-212ENST00000568539 RRP7AQ9Y3A4 280 aaKnown RBP11.15□□□□□ -0.62
SF3B3-212ENST00000568539 PARP4Q9UKK3 1724 aaKnown RBP11.15□□□□□ -0.63
SF3B3-212ENST00000568539 PCDH11XQ9BZA7 1347 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 PCDH11YQ9BZA8 1340 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 SENP3-EIF4A1A0A087X0R7 540 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 CYP27B1O15528 508 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 PHKG2P15735 406 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 RIPK4P57078 832 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 AKAP4Q5JQC9 854 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 SEPT12Q8IYM1 358 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 PKD1L3Q7Z443 1732 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 MAP3K5Q99683 1374 aa11.14□□□□□ -0.63
SF3B3-212ENST00000568539 LRRC37A3O60309 1634 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 LRP5O75197 1615 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 A0A0G2JS52 829 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 MYT1Q01538 1121 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 NEUROD2Q15784 382 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 C1orf141Q5JVX7 400 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 IFNL2Q8IZJ0 200 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 DDX54Q8TDD1 881 aaKnown RBP11.13□□□□□ -0.63
SF3B3-212ENST00000568539 TRIM35Q9UPQ4 493 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 WNK3Q9BYP7 1800 aa11.13□□□□□ -0.63
SF3B3-212ENST00000568539 GNAT3A8MTJ3 354 aa11.12□□□□□ -0.63
SF3B3-212ENST00000568539 HTATSF1O43719 755 aaKnown RBP11.12□□□□□ -0.63
SF3B3-212ENST00000568539 HNRNPUQ00839 825 aaKnown RBP eCLIP11.12□□□□□ -0.63
SF3B3-212ENST00000568539 NKX1-1Q15270 411 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-212ENST00000568539 CCDC27Q2M243 656 aa11.12□□□□□ -0.63
SF3B3-212ENST00000568539 NGEFQ8N5V2 710 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms