RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 SULT6B1Q6IMI4 303 aa29.46■■■□□ 2.31
CLN3-234ENST00000568472 MARCH10Q8NA82 808 aaPredicted RBP29.46■■■□□ 2.31
CLN3-234ENST00000568472 KDRP35968 1356 aa29.45■■■□□ 2.31
CLN3-234ENST00000568472 SPG7Q9UQ90 795 aa29.45■■■□□ 2.31
CLN3-234ENST00000568472 BCL9O00512 1426 aa29.44■■■□□ 2.3
CLN3-234ENST00000568472 U2SURPO15042 1029 aaKnown RBP29.42■■■□□ 2.3
CLN3-234ENST00000568472 ANP32CO43423 234 aa29.42■■■□□ 2.3
CLN3-234ENST00000568472 FAM182BQ5T319 152 aa29.42■■■□□ 2.3
CLN3-234ENST00000568472 UPF1Q92900 1129 aaKnown RBP eCLIP29.42■■■□□ 2.3
CLN3-234ENST00000568472 DDX54Q8TDD1 881 aaKnown RBP29.41■■■□□ 2.3
CLN3-234ENST00000568472 AMOTQ4VCS5 1084 aa29.4■■■□□ 2.3
CLN3-234ENST00000568472 PCDH11XQ9BZA7 1347 aa29.4■■■□□ 2.3
CLN3-234ENST00000568472 PCDH11YQ9BZA8 1340 aa29.4■■■□□ 2.3
CLN3-234ENST00000568472 RGPD1P0DJD0 1748 aa29.4■■■□□ 2.3
CLN3-234ENST00000568472 PLEKHO1Q53GL0 409 aaPredicted RBP29.39■■■□□ 2.3
CLN3-234ENST00000568472 AEBP1Q8IUX7 1158 aa29.39■■■□□ 2.3
CLN3-234ENST00000568472 HMOX1P09601 288 aa29.36■■■□□ 2.29
CLN3-234ENST00000568472 SF3B2Q13435 895 aaKnown RBP29.36■■■□□ 2.29
CLN3-234ENST00000568472 U2AF1L5P0DN76 240 aaPredicted RBP29.35■■■□□ 2.29
CLN3-234ENST00000568472 U2AF1Q01081 240 aaKnown RBP eCLIP29.35■■■□□ 2.29
CLN3-234ENST00000568472 FCHSD2O94868 740 aa29.33■■■□□ 2.29
CLN3-234ENST00000568472 IFNL2Q8IZJ0 200 aa29.32■■■□□ 2.28
CLN3-234ENST00000568472 CYP27B1O15528 508 aa29.31■■■□□ 2.28
CLN3-234ENST00000568472 TRIM37O94972 964 aa29.3■■■□□ 2.28
CLN3-234ENST00000568472 NKX1-1Q15270 411 aaPredicted RBP29.3■■■□□ 2.28
CLN3-234ENST00000568472 BCL11BQ9C0K0 894 aaPredicted RBP29.3■■■□□ 2.28
CLN3-234ENST00000568472 PNNQ9H307 717 aaKnown RBP29.3■■■□□ 2.28
CLN3-234ENST00000568472 PKD1L3Q7Z443 1732 aa29.29■■■□□ 2.28
CLN3-234ENST00000568472 HSP90AB1P08238 724 aaKnown RBP29.29■■■□□ 2.28
CLN3-234ENST00000568472 PHKG2P15735 406 aa29.28■■■□□ 2.28
CLN3-234ENST00000568472 EP400Q96L91 3159 aa29.28■■■□□ 2.28
CLN3-234ENST00000568472 RSPH6AQ9H0K4 717 aa29.27■■■□□ 2.28
CLN3-234ENST00000568472 C1orf141Q5JVX7 400 aa29.26■■■□□ 2.27
CLN3-234ENST00000568472 ZNF530Q6P9A1 599 aaPredicted RBP29.26■■■□□ 2.27
CLN3-234ENST00000568472 NEFMP07197 916 aa29.24■■■□□ 2.27
CLN3-234ENST00000568472 PRKAR2BP31323 418 aa29.24■■■□□ 2.27
CLN3-234ENST00000568472 BAG6P46379 1132 aa29.24■■■□□ 2.27
CLN3-234ENST00000568472 SHANK3Q9BYB0 1731 aa29.23■■■□□ 2.27
CLN3-234ENST00000568472 APBA3O96018 575 aa29.22■■■□□ 2.27
CLN3-234ENST00000568472 WDR43Q15061 677 aaKnown RBP eCLIP29.22■■■□□ 2.27
CLN3-234ENST00000568472 AKAP4Q5JQC9 854 aa29.22■■■□□ 2.27
CLN3-234ENST00000568472 GAS2L2Q8NHY3 880 aa29.22■■■□□ 2.27
CLN3-234ENST00000568472 DCAF5Q96JK2 942 aa29.22■■■□□ 2.27
CLN3-234ENST00000568472 ACSBG1Q96GR2 724 aa29.21■■■□□ 2.27
CLN3-234ENST00000568472 PRIM1P49642 420 aaKnown RBP29.2■■■□□ 2.26
CLN3-234ENST00000568472 MTHFSDQ2M296 383 aaKnown RBP29.2■■■□□ 2.26
CLN3-234ENST00000568472 KCNQ2O43526 872 aa29.19■■■□□ 2.26
CLN3-234ENST00000568472 PLSCR1O15162 318 aa29.18■■■□□ 2.26
CLN3-234ENST00000568472 SYTL4Q96C24 671 aaPredicted RBP29.17■■■□□ 2.26
CLN3-234ENST00000568472 ERVV-2B6SEH9 535 aa29.16■■■□□ 2.26
CLN3-234ENST00000568472 PHACTR3Q96KR7 559 aa29.16■■■□□ 2.26
CLN3-234ENST00000568472 SBF2Q86WG5 1849 aa29.15■■■□□ 2.26
CLN3-234ENST00000568472 PLEKHF1Q96S99 279 aa29.14■■■□□ 2.26
CLN3-234ENST00000568472 NHSQ6T4R5 1651 aa29.14■■■□□ 2.26
CLN3-234ENST00000568472 PTF1AQ7RTS3 328 aa29.13■■■□□ 2.25
CLN3-234ENST00000568472 DEFB132Q7Z7B7 95 aa29.13■■■□□ 2.25
CLN3-234ENST00000568472 MRS2Q9HD23 443 aa29.13■■■□□ 2.25
CLN3-234ENST00000568472 GNAT3A8MTJ3 354 aa29.12■■■□□ 2.25
CLN3-234ENST00000568472 MAPK8IP3Q9UPT6 1336 aa29.12■■■□□ 2.25
CLN3-234ENST00000568472 EN1Q05925 392 aaPredicted RBP29.11■■■□□ 2.25
CLN3-234ENST00000568472 DIEXFQ68CQ4 756 aaKnown RBP29.11■■■□□ 2.25
CLN3-234ENST00000568472 MPRIPQ6WCQ1 1025 aa29.11■■■□□ 2.25
CLN3-234ENST00000568472 CAMKK2Q96RR4 588 aa29.11■■■□□ 2.25
CLN3-234ENST00000568472 TMOD3Q9NYL9 352 aa29.11■■■□□ 2.25
CLN3-234ENST00000568472 ADAMTS8Q9UP79 889 aa29.11■■■□□ 2.25
CLN3-234ENST00000568472 TNS1Q9HBL0 1735 aaKnown RBP29.11■■■□□ 2.25
CLN3-234ENST00000568472 MAP3K5Q99683 1374 aa29.09■■■□□ 2.25
CLN3-234ENST00000568472 HTATSF1O43719 755 aaKnown RBP29.08■■■□□ 2.25
CLN3-234ENST00000568472 KDM6AO15550 1401 aaPredicted RBP29.07■■■□□ 2.24
CLN3-234ENST00000568472 CABP4P57796 275 aa29.07■■■□□ 2.24
CLN3-234ENST00000568472 CCDC184Q52MB2 194 aa29.07■■■□□ 2.24
CLN3-234ENST00000568472 DOT1LQ8TEK3 1739 aa29.06■■■□□ 2.24
CLN3-234ENST00000568472 RNMTO43148 476 aaKnown RBP29.06■■■□□ 2.24
CLN3-234ENST00000568472 PNISRQ8TF01 805 aaKnown RBP29.06■■■□□ 2.24
CLN3-234ENST00000568472 PIGBQ92521 554 aa29.06■■■□□ 2.24
CLN3-234ENST00000568472 SMARCC1Q92922 1105 aaPredicted RBP29.06■■■□□ 2.24
CLN3-234ENST00000568472 RUNDC1Q96C34 613 aa29.06■■■□□ 2.24
CLN3-234ENST00000568472 EZH2Q15910 746 aaKnown RBP29.05■■■□□ 2.24
CLN3-234ENST00000568472 NFE2L2Q16236 605 aa29.05■■■□□ 2.24
CLN3-234ENST00000568472 RTF1Q92541 710 aaKnown RBP29.05■■■□□ 2.24
CLN3-234ENST00000568472 HMGB2P26583 209 aaKnown RBP29.04■■■□□ 2.24
CLN3-234ENST00000568472 LGR6Q9HBX8 967 aa29.03■■■□□ 2.24
CLN3-234ENST00000568472 SLC27A3Q5K4L6 730 aa29.01■■■□□ 2.23
CLN3-234ENST00000568472 NFATC2IPQ8NCF5 419 aa29.01■■■□□ 2.23
CLN3-234ENST00000568472 IL17REQ8NFR9 667 aa29.01■■■□□ 2.23
CLN3-234ENST00000568472 SLC52A2Q9HAB3 445 aa29.01■■■□□ 2.23
CLN3-234ENST00000568472 CCER2I3L3R5 266 aa29■■■□□ 2.23
CLN3-234ENST00000568472 TXNRD1Q16881 649 aa29■■■□□ 2.23
CLN3-234ENST00000568472 RGPD3A6NKT7 1758 aaPredicted RBP29■■■□□ 2.23
CLN3-234ENST00000568472 RGPD4Q7Z3J3 1758 aa29■■■□□ 2.23
CLN3-234ENST00000568472 KAT6BQ8WYB5 2073 aa29■■■□□ 2.23
CLN3-234ENST00000568472 TOGARAM1Q9Y4F4 1720 aa29■■■□□ 2.23
CLN3-234ENST00000568472 BTAF1O14981 1849 aa28.99■■■□□ 2.23
CLN3-234ENST00000568472 TEFQ10587 303 aa28.99■■■□□ 2.23
CLN3-234ENST00000568472 CEMIPQ8WUJ3 1361 aa28.98■■■□□ 2.23
CLN3-234ENST00000568472 TMPOP42166 694 aaKnown RBP28.97■■■□□ 2.23
CLN3-234ENST00000568472 LMOD3Q0VAK6 560 aa28.97■■■□□ 2.23
CLN3-234ENST00000568472 CCDC146Q8IYE0 955 aa28.97■■■□□ 2.23
CLN3-234ENST00000568472 PROM2Q8N271 834 aa28.97■■■□□ 2.23
CLN3-234ENST00000568472 ADAMTS7Q9UKP4 1686 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms