RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 QSER1Q2KHR3 1735 aa23.46■■□□□ 1.35
CLN3-231ENST00000568422 MEGF6O75095 1541 aa23.45■■□□□ 1.34
CLN3-231ENST00000568422 NBPF6Q5VWK0 638 aa23.45■■□□□ 1.34
CLN3-231ENST00000568422 NBPF4Q96M43 638 aa23.45■■□□□ 1.34
CLN3-231ENST00000568422 LRRC4BQ9NT99 713 aa23.45■■□□□ 1.34
CLN3-231ENST00000568422 LY75O60449 1722 aa23.45■■□□□ 1.34
CLN3-231ENST00000568422 INSRP06213 1382 aa23.44■■□□□ 1.34
CLN3-231ENST00000568422 FLT4P35916 1363 aa23.44■■□□□ 1.34
CLN3-231ENST00000568422 PRIM1P49642 420 aaKnown RBP23.44■■□□□ 1.34
CLN3-231ENST00000568422 RAPGEF4Q8WZA2 1011 aa23.43■■□□□ 1.34
CLN3-231ENST00000568422 SYTL4Q96C24 671 aaPredicted RBP23.43■■□□□ 1.34
CLN3-231ENST00000568422 YY1P25490 414 aa23.42■■□□□ 1.34
CLN3-231ENST00000568422 SGIP1Q9BQI5 828 aa23.42■■□□□ 1.34
CLN3-231ENST00000568422 ZNF827Q17R98 1081 aa23.41■■□□□ 1.34
CLN3-231ENST00000568422 CARD14Q9BXL6 1004 aa23.41■■□□□ 1.34
CLN3-231ENST00000568422 HSP90AB2PQ58FF8 381 aa23.4■■□□□ 1.34
CLN3-231ENST00000568422 AKT1S1Q96B36 256 aa23.4■■□□□ 1.34
CLN3-231ENST00000568422 TATP17735 454 aaPredicted RBP23.39■■□□□ 1.33
CLN3-231ENST00000568422 SLC16A10Q8TF71 515 aa23.39■■□□□ 1.33
CLN3-231ENST00000568422 NSD3Q9BZ95 1437 aa23.39■■□□□ 1.33
CLN3-231ENST00000568422 NSD2O96028 1365 aa23.39■■□□□ 1.33
CLN3-231ENST00000568422 SYT17Q9BSW7 474 aa23.38■■□□□ 1.33
CLN3-231ENST00000568422 FHDC1Q9C0D6 1143 aaPredicted RBP23.38■■□□□ 1.33
CLN3-231ENST00000568422 ANKRD26Q9UPS8 1709 aa23.38■■□□□ 1.33
CLN3-231ENST00000568422 USHBP1Q8N6Y0 703 aa23.37■■□□□ 1.33
CLN3-231ENST00000568422 ARXQ96QS3 562 aa23.37■■□□□ 1.33
CLN3-231ENST00000568422 PCDH11XQ9BZA7 1347 aa23.36■■□□□ 1.33
CLN3-231ENST00000568422 PCDH11YQ9BZA8 1340 aa23.36■■□□□ 1.33
CLN3-231ENST00000568422 MAP2P11137 1827 aaKnown RBP23.36■■□□□ 1.33
CLN3-231ENST00000568422 HMGB2P26583 209 aaKnown RBP23.36■■□□□ 1.33
CLN3-231ENST00000568422 COL24A1Q17RW2 1714 aa23.36■■□□□ 1.33
CLN3-231ENST00000568422 TUBGCP6Q96RT7 1819 aa23.36■■□□□ 1.33
CLN3-231ENST00000568422 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
CLN3-231ENST00000568422 MAP3K5Q99683 1374 aa23.35■■□□□ 1.33
CLN3-231ENST00000568422 TFCP2L1Q9NZI6 479 aa23.34■■□□□ 1.33
CLN3-231ENST00000568422 CCNL1Q9UK58 526 aaPredicted RBP23.33■■□□□ 1.33
CLN3-231ENST00000568422 PKD1L3Q7Z443 1732 aa23.33■■□□□ 1.32
CLN3-231ENST00000568422 EMILIN1Q9Y6C2 1016 aa23.32■■□□□ 1.32
CLN3-231ENST00000568422 PNPLA7Q6ZV29 1317 aa23.32■■□□□ 1.32
CLN3-231ENST00000568422 NCAPD2Q15021 1401 aa23.31■■□□□ 1.32
CLN3-231ENST00000568422 POLD1P28340 1107 aa23.3■■□□□ 1.32
CLN3-231ENST00000568422 KCNQ4P56696 695 aa23.3■■□□□ 1.32
CLN3-231ENST00000568422 WASHC2AQ641Q2 1341 aa23.3■■□□□ 1.32
CLN3-231ENST00000568422 ITGB4P16144 1822 aa23.29■■□□□ 1.32
CLN3-231ENST00000568422 PPM1GO15355 546 aaPredicted RBP23.29■■□□□ 1.32
CLN3-231ENST00000568422 CHD4Q14839 1912 aa23.28■■□□□ 1.32
CLN3-231ENST00000568422 C5P01031 1676 aa23.28■■□□□ 1.32
CLN3-231ENST00000568422 TAF1LQ8IZX4 1826 aa23.26■■□□□ 1.31
CLN3-231ENST00000568422 UTRNP46939 3433 aa23.26■■□□□ 1.31
CLN3-231ENST00000568422 CYP27B1O15528 508 aa23.26■■□□□ 1.31
CLN3-231ENST00000568422 EIF4G2P78344 907 aaKnown RBP eCLIP23.26■■□□□ 1.311e-9■■■■□ 22.4
CLN3-231ENST00000568422 SPG7Q9UQ90 795 aa23.26■■□□□ 1.31
CLN3-231ENST00000568422 TOGARAM1Q9Y4F4 1720 aa23.25■■□□□ 1.31
CLN3-231ENST00000568422 NKX1-1Q15270 411 aaPredicted RBP23.24■■□□□ 1.31
CLN3-231ENST00000568422 MPRIPQ6WCQ1 1025 aa23.24■■□□□ 1.31
CLN3-231ENST00000568422 POLR3GLQ9BT43 218 aa23.24■■□□□ 1.31
CLN3-231ENST00000568422 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN3-231ENST00000568422 POLKQ9UBT6 870 aa23.24■■□□□ 1.31
CLN3-231ENST00000568422 SMARCC1Q92922 1105 aaPredicted RBP23.23■■□□□ 1.31
CLN3-231ENST00000568422 PALLDQ8WX93 1383 aa23.23■■□□□ 1.31
CLN3-231ENST00000568422 EYA1Q99502 592 aa23.22■■□□□ 1.31
CLN3-231ENST00000568422 FLAD1Q8NFF5 587 aa23.21■■□□□ 1.31
CLN3-231ENST00000568422 PLEKHG2Q9H7P9 1386 aa23.21■■□□□ 1.31
CLN3-231ENST00000568422 MSH5O43196 834 aa23.2■■□□□ 1.3
CLN3-231ENST00000568422 COL23A1Q86Y22 540 aaPredicted RBP23.2■■□□□ 1.3
CLN3-231ENST00000568422 HSPA5P11021 654 aaKnown RBP23.19■■□□□ 1.3
CLN3-231ENST00000568422 C4BP0C0L5 1744 aa23.17■■□□□ 1.3
CLN3-231ENST00000568422 GPR162Q16538 588 aa23.17■■□□□ 1.3
CLN3-231ENST00000568422 KLHL34Q8N239 644 aa23.17■■□□□ 1.3
CLN3-231ENST00000568422 CCER1Q8TC90 406 aaPredicted RBP23.17■■□□□ 1.3
CLN3-231ENST00000568422 PIGBQ92521 554 aa23.17■■□□□ 1.3
CLN3-231ENST00000568422 IFNL2Q8IZJ0 200 aa23.16■■□□□ 1.3
CLN3-231ENST00000568422 PANK3Q9H999 370 aa23.16■■□□□ 1.3
CLN3-231ENST00000568422 TNNT2P45379 298 aaPredicted RBP23.15■■□□□ 1.3
CLN3-231ENST00000568422 EIF4A2Q14240 407 aaKnown RBP23.15■■□□□ 1.3
CLN3-231ENST00000568422 TMOD3Q9NYL9 352 aa23.14■■□□□ 1.29
CLN3-231ENST00000568422 UBR3Q6ZT12 1888 aa23.13■■□□□ 1.29
CLN3-231ENST00000568422 PHKG2P15735 406 aa23.13■■□□□ 1.29
CLN3-231ENST00000568422 ZNF784Q8NCA9 323 aaPredicted RBP23.13■■□□□ 1.29
CLN3-231ENST00000568422 AK7Q96M32 723 aa23.12■■□□□ 1.29
CLN3-231ENST00000568422 IGSF1Q8N6C5 1336 aa23.11■■□□□ 1.29
CLN3-231ENST00000568422 GOLGB1Q14789 3259 aaKnown RBP23.11■■□□□ 1.29
CLN3-231ENST00000568422 LOC102724428A0A0B4J2F2 783 aa23.1■■□□□ 1.29
CLN3-231ENST00000568422 SIK1P57059 783 aa23.1■■□□□ 1.29
CLN3-231ENST00000568422 NLGN2Q8NFZ4 835 aa23.1■■□□□ 1.29
CLN3-231ENST00000568422 MSL1Q68DK7 614 aa23.09■■□□□ 1.29
CLN3-231ENST00000568422 HSP90AB1P08238 724 aaKnown RBP23.08■■□□□ 1.29
CLN3-231ENST00000568422 CD2APQ9Y5K6 639 aa23.08■■□□□ 1.29
CLN3-231ENST00000568422 SSFA2P28290 1259 aa23.07■■□□□ 1.28
CLN3-231ENST00000568422 MORC1Q86VD1 984 aa23.07■■□□□ 1.28
CLN3-231ENST00000568422 PELP1Q8IZL8 1130 aaKnown RBP23.07■■□□□ 1.28
CLN3-231ENST00000568422 ZNF831Q5JPB2 1677 aa23.06■■□□□ 1.28
CLN3-231ENST00000568422 ERVV-2B6SEH9 535 aa23.06■■□□□ 1.28
CLN3-231ENST00000568422 GRIN3BO60391 1043 aa23.06■■□□□ 1.28
CLN3-231ENST00000568422 ASAP1Q9ULH1 1129 aa23.06■■□□□ 1.28
CLN3-231ENST00000568422 AMOTQ4VCS5 1084 aa23.05■■□□□ 1.28
CLN3-231ENST00000568422 PLEKHO1Q53GL0 409 aaPredicted RBP23.05■■□□□ 1.28
CLN3-231ENST00000568422 KNSTRNQ9Y448 316 aa23.05■■□□□ 1.28
CLN3-231ENST00000568422 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.04■■□□□ 1.28
CLN3-231ENST00000568422 ATP6V1AP38606 617 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms