RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SHANK3Q9BYB0 1731 aa22.34■■□□□ 1.17
CLN3-229ENST00000567963 NSD3Q9BZ95 1437 aa22.34■■□□□ 1.17
CLN3-229ENST00000567963 ATF5Q9Y2D1 282 aaPredicted RBP22.34■■□□□ 1.17
CLN3-229ENST00000567963 PAPPAQ13219 1627 aa22.33■■□□□ 1.17
CLN3-229ENST00000567963 CGNL1Q0VF96 1302 aa22.33■■□□□ 1.17
CLN3-229ENST00000567963 KIF24Q5T7B8 1368 aa22.33■■□□□ 1.17
CLN3-229ENST00000567963 PRIM1P49642 420 aaKnown RBP22.33■■□□□ 1.16
CLN3-229ENST00000567963 SYTL4Q96C24 671 aaPredicted RBP22.33■■□□□ 1.16
CLN3-229ENST00000567963 FLT4P35916 1363 aa22.32■■□□□ 1.16
CLN3-229ENST00000567963 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
CLN3-229ENST00000567963 RAPGEF4Q8WZA2 1011 aa22.31■■□□□ 1.16
CLN3-229ENST00000567963 MTFR1LQ9H019 292 aa22.31■■□□□ 1.16
CLN3-229ENST00000567963 ZNF827Q17R98 1081 aa22.3■■□□□ 1.16
CLN3-229ENST00000567963 DOT1LQ8TEK3 1739 aa22.3■■□□□ 1.16
CLN3-229ENST00000567963 EMILIN1Q9Y6C2 1016 aa22.29■■□□□ 1.16
CLN3-229ENST00000567963 TATP17735 454 aaPredicted RBP22.28■■□□□ 1.16
CLN3-229ENST00000567963 NSD2O96028 1365 aa22.28■■□□□ 1.16
CLN3-229ENST00000567963 AKT1S1Q96B36 256 aa22.28■■□□□ 1.16
CLN3-229ENST00000567963 SGIP1Q9BQI5 828 aa22.28■■□□□ 1.16
CLN3-229ENST00000567963 DCAF8L1A6NGE4 600 aa22.26■■□□□ 1.15
CLN3-229ENST00000567963 KCNQ4P56696 695 aa22.25■■□□□ 1.15
CLN3-229ENST00000567963 POLR3GLQ9BT43 218 aa22.25■■□□□ 1.15
CLN3-229ENST00000567963 PPM1GO15355 546 aaPredicted RBP22.24■■□□□ 1.15
CLN3-229ENST00000567963 EIF4G2P78344 907 aaKnown RBP eCLIP22.24■■□□□ 1.151e-9■■■■□ 22.4
CLN3-229ENST00000567963 LY75O60449 1722 aa22.24■■□□□ 1.15
CLN3-229ENST00000567963 MAP2P11137 1827 aaKnown RBP22.24■■□□□ 1.15
CLN3-229ENST00000567963 PCDH11XQ9BZA7 1347 aa22.23■■□□□ 1.15
CLN3-229ENST00000567963 PCDH11YQ9BZA8 1340 aa22.23■■□□□ 1.15
CLN3-229ENST00000567963 WASHC2AQ641Q2 1341 aa22.23■■□□□ 1.15
CLN3-229ENST00000567963 CCER1Q8TC90 406 aaPredicted RBP22.22■■□□□ 1.15
CLN3-229ENST00000567963 FHDC1Q9C0D6 1143 aaPredicted RBP22.22■■□□□ 1.15
CLN3-229ENST00000567963 UTRNP46939 3433 aa22.22■■□□□ 1.15
CLN3-229ENST00000567963 HSPA5P11021 654 aaKnown RBP22.22■■□□□ 1.15
CLN3-229ENST00000567963 SYT17Q9BSW7 474 aa22.22■■□□□ 1.15
CLN3-229ENST00000567963 ANKRD26Q9UPS8 1709 aa22.21■■□□□ 1.15
CLN3-229ENST00000567963 QSER1Q2KHR3 1735 aa22.21■■□□□ 1.15
CLN3-229ENST00000567963 YY1P25490 414 aa22.21■■□□□ 1.15
CLN3-229ENST00000567963 TFCP2L1Q9NZI6 479 aa22.21■■□□□ 1.15
CLN3-229ENST00000567963 POLKQ9UBT6 870 aa22.21■■□□□ 1.15
CLN3-229ENST00000567963 PNPLA7Q6ZV29 1317 aa22.2■■□□□ 1.14
CLN3-229ENST00000567963 CYP27B1O15528 508 aa22.2■■□□□ 1.14
CLN3-229ENST00000567963 SLC16A10Q8TF71 515 aa22.2■■□□□ 1.14
CLN3-229ENST00000567963 ARXQ96QS3 562 aa22.2■■□□□ 1.14
CLN3-229ENST00000567963 CCNL1Q9UK58 526 aaPredicted RBP22.2■■□□□ 1.14
CLN3-229ENST00000567963 NCAPD2Q15021 1401 aa22.19■■□□□ 1.14
CLN3-229ENST00000567963 EYA1Q99502 592 aa22.17■■□□□ 1.14
CLN3-229ENST00000567963 TUBGCP6Q96RT7 1819 aa22.16■■□□□ 1.14
CLN3-229ENST00000567963 PKD1L3Q7Z443 1732 aa22.16■■□□□ 1.14
CLN3-229ENST00000567963 MPRIPQ6WCQ1 1025 aa22.15■■□□□ 1.14
CLN3-229ENST00000567963 PANK3Q9H999 370 aa22.15■■□□□ 1.14
CLN3-229ENST00000567963 TNNT2P45379 298 aaPredicted RBP22.15■■□□□ 1.14
CLN3-229ENST00000567963 SPG7Q9UQ90 795 aa22.15■■□□□ 1.14
CLN3-229ENST00000567963 NKX1-1Q15270 411 aaPredicted RBP22.14■■□□□ 1.13
CLN3-229ENST00000567963 COL24A1Q17RW2 1714 aa22.13■■□□□ 1.13
CLN3-229ENST00000567963 MAP3K5Q99683 1374 aa22.12■■□□□ 1.13
CLN3-229ENST00000567963 ITGB4P16144 1822 aa22.12■■□□□ 1.13
CLN3-229ENST00000567963 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.12■■□□□ 1.13
CLN3-229ENST00000567963 TOGARAM1Q9Y4F4 1720 aa22.12■■□□□ 1.13
CLN3-229ENST00000567963 PALLDQ8WX93 1383 aa22.11■■□□□ 1.13
CLN3-229ENST00000567963 POLD1P28340 1107 aa22.11■■□□□ 1.13
CLN3-229ENST00000567963 EIF4A2Q14240 407 aaKnown RBP22.11■■□□□ 1.13
CLN3-229ENST00000567963 HMGB2P26583 209 aaKnown RBP22.1■■□□□ 1.13
CLN3-229ENST00000567963 COL23A1Q86Y22 540 aaPredicted RBP22.09■■□□□ 1.13
CLN3-229ENST00000567963 PIGBQ92521 554 aa22.09■■□□□ 1.13
CLN3-229ENST00000567963 SMARCC1Q92922 1105 aaPredicted RBP22.09■■□□□ 1.13
CLN3-229ENST00000567963 C5P01031 1676 aa22.09■■□□□ 1.13
CLN3-229ENST00000567963 TAF1LQ8IZX4 1826 aa22.08■■□□□ 1.12
CLN3-229ENST00000567963 MSH5O43196 834 aa22.07■■□□□ 1.12
CLN3-229ENST00000567963 IFNL2Q8IZJ0 200 aa22.07■■□□□ 1.12
CLN3-229ENST00000567963 PHKG2P15735 406 aa22.06■■□□□ 1.12
CLN3-229ENST00000567963 GOLGB1Q14789 3259 aaKnown RBP22.06■■□□□ 1.12
CLN3-229ENST00000567963 KLHL34Q8N239 644 aa22.04■■□□□ 1.12
CLN3-229ENST00000567963 IGSF1Q8N6C5 1336 aa22.04■■□□□ 1.12
CLN3-229ENST00000567963 PLEKHG2Q9H7P9 1386 aa22.03■■□□□ 1.12
CLN3-229ENST00000567963 MORC1Q86VD1 984 aa22.03■■□□□ 1.12
CLN3-229ENST00000567963 FLAD1Q8NFF5 587 aa22.03■■□□□ 1.12
CLN3-229ENST00000567963 TMOD3Q9NYL9 352 aa22.03■■□□□ 1.12
CLN3-229ENST00000567963 KNSTRNQ9Y448 316 aa22.03■■□□□ 1.12
CLN3-229ENST00000567963 C4BP0C0L5 1744 aa22.02■■□□□ 1.12
CLN3-229ENST00000567963 LOC102724428A0A0B4J2F2 783 aa22.01■■□□□ 1.11
CLN3-229ENST00000567963 SIK1P57059 783 aa22.01■■□□□ 1.11
CLN3-229ENST00000567963 ASAP1Q9ULH1 1129 aa22.01■■□□□ 1.11
CLN3-229ENST00000567963 GPR162Q16538 588 aa22■■□□□ 1.11
CLN3-229ENST00000567963 AK7Q96M32 723 aa22■■□□□ 1.11
CLN3-229ENST00000567963 CHD4Q14839 1912 aa22■■□□□ 1.11
CLN3-229ENST00000567963 MSL1Q68DK7 614 aa21.99■■□□□ 1.11
CLN3-229ENST00000567963 AMIGO3Q86WK7 504 aa21.98■■□□□ 1.11
CLN3-229ENST00000567963 NLGN2Q8NFZ4 835 aa21.98■■□□□ 1.11
CLN3-229ENST00000567963 PLEKHO1Q53GL0 409 aaPredicted RBP21.97■■□□□ 1.11
CLN3-229ENST00000567963 ATG3Q9NT62 314 aa21.97■■□□□ 1.11
CLN3-229ENST00000567963 KIF7Q2M1P5 1343 aa21.97■■□□□ 1.11
CLN3-229ENST00000567963 UBR3Q6ZT12 1888 aa21.97■■□□□ 1.11
CLN3-229ENST00000567963 LINC00116Q8NCU8 138 aa21.96■■□□□ 1.11
CLN3-229ENST00000567963 ERVV-2B6SEH9 535 aa21.96■■□□□ 1.11
CLN3-229ENST00000567963 HSP90AB1P08238 724 aaKnown RBP21.96■■□□□ 1.11
CLN3-229ENST00000567963 ATP6V1AP38606 617 aa21.96■■□□□ 1.11
CLN3-229ENST00000567963 AMOTQ4VCS5 1084 aa21.96■■□□□ 1.11
CLN3-229ENST00000567963 AMER1Q5JTC6 1135 aaPredicted RBP21.96■■□□□ 1.11
CLN3-229ENST00000567963 DCAF5Q96JK2 942 aa21.96■■□□□ 1.11
CLN3-229ENST00000567963 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms