RNA–Protein interactions for RNA: ENST00000567712.1

CNEP1R1-209, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

TSL 4

Gene CNEP1R1, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-209ENST00000567712 CHD4Q14839 1912 aa32.25■■■□□ 2.75
CNEP1R1-209ENST00000567712 COL24A1Q17RW2 1714 aa32.24■■■□□ 2.75
CNEP1R1-209ENST00000567712 FYB1O15117 783 aa32.24■■■□□ 2.75
CNEP1R1-209ENST00000567712 SYTL4Q96C24 671 aaPredicted RBP32.24■■■□□ 2.75
CNEP1R1-209ENST00000567712 NBPF6Q5VWK0 638 aa32.23■■■□□ 2.75
CNEP1R1-209ENST00000567712 NBPF4Q96M43 638 aa32.23■■■□□ 2.75
CNEP1R1-209ENST00000567712 GGNBP2Q9H3C7 697 aa32.23■■■□□ 2.75
CNEP1R1-209ENST00000567712 PNPLA7Q6ZV29 1317 aa32.23■■■□□ 2.75
CNEP1R1-209ENST00000567712 SLC27A3Q5K4L6 730 aa32.22■■■□□ 2.75
CNEP1R1-209ENST00000567712 ZCRB1Q8TBF4 217 aaKnown RBP32.22■■■□□ 2.75
CNEP1R1-209ENST00000567712 USHBP1Q8N6Y0 703 aa32.21■■■□□ 2.75
CNEP1R1-209ENST00000567712 KIF20BQ96Q89 1820 aa32.18■■■□□ 2.74
CNEP1R1-209ENST00000567712 RTL1A6NKG5 1358 aa32.18■■■□□ 2.74
CNEP1R1-209ENST00000567712 USP47Q96K76 1375 aa32.18■■■□□ 2.74
CNEP1R1-209ENST00000567712 MAP3K5Q99683 1374 aa32.18■■■□□ 2.74
CNEP1R1-209ENST00000567712 ZNF784Q8NCA9 323 aaPredicted RBP32.17■■■□□ 2.74
CNEP1R1-209ENST00000567712 SLC24A1O60721 1099 aa32.14■■■□□ 2.74
CNEP1R1-209ENST00000567712 TMF1P82094 1093 aa32.14■■■□□ 2.74
CNEP1R1-209ENST00000567712 HSP90AB2PQ58FF8 381 aa32.13■■■□□ 2.73
CNEP1R1-209ENST00000567712 SLC16A10Q8TF71 515 aa32.13■■■□□ 2.73
CNEP1R1-209ENST00000567712 TFCP2L1Q9NZI6 479 aa32.13■■■□□ 2.73
CNEP1R1-209ENST00000567712 GOLGB1Q14789 3259 aaKnown RBP32.11■■■□□ 2.73
CNEP1R1-209ENST00000567712 CCNL1Q9UK58 526 aaPredicted RBP32.09■■■□□ 2.73
CNEP1R1-209ENST00000567712 KLHL34Q8N239 644 aa32.08■■■□□ 2.73
CNEP1R1-209ENST00000567712 CARD14Q9BXL6 1004 aa32.08■■■□□ 2.73
CNEP1R1-209ENST00000567712 INSRP06213 1382 aa32.07■■■□□ 2.72
CNEP1R1-209ENST00000567712 NLGN2Q8NFZ4 835 aa32.05■■■□□ 2.72
CNEP1R1-209ENST00000567712 RAPGEF4Q8WZA2 1011 aa32.05■■■□□ 2.72
CNEP1R1-209ENST00000567712 TOGARAM1Q9Y4F4 1720 aa32.05■■■□□ 2.72
CNEP1R1-209ENST00000567712 ITGB4P16144 1822 aa32.05■■■□□ 2.72
CNEP1R1-209ENST00000567712 TAF1LQ8IZX4 1826 aa32.05■■■□□ 2.72
CNEP1R1-209ENST00000567712 CGNL1Q0VF96 1302 aa32.04■■■□□ 2.72
CNEP1R1-209ENST00000567712 SMG6Q86US8 1419 aaKnown RBP32.04■■■□□ 2.72
CNEP1R1-209ENST00000567712 POLD1P28340 1107 aa32.04■■■□□ 2.72
CNEP1R1-209ENST00000567712 COL23A1Q86Y22 540 aaPredicted RBP32.04■■■□□ 2.72
CNEP1R1-209ENST00000567712 C5P01031 1676 aa32.04■■■□□ 2.72
CNEP1R1-209ENST00000567712 TATP17735 454 aaPredicted RBP32.03■■■□□ 2.72
CNEP1R1-209ENST00000567712 FLT4P35916 1363 aa32.03■■■□□ 2.72
CNEP1R1-209ENST00000567712 GPR162Q16538 588 aa32.02■■■□□ 2.72
CNEP1R1-209ENST00000567712 EMILIN1Q9Y6C2 1016 aa32.02■■■□□ 2.72
CNEP1R1-209ENST00000567712 CYP27B1O15528 508 aa32■■■□□ 2.71
CNEP1R1-209ENST00000567712 NSD3Q9BZ95 1437 aa31.99■■■□□ 2.71
CNEP1R1-209ENST00000567712 PKD1L3Q7Z443 1732 aa31.98■■■□□ 2.71
CNEP1R1-209ENST00000567712 MAP2P11137 1827 aaKnown RBP31.98■■■□□ 2.71
CNEP1R1-209ENST00000567712 PCDH11XQ9BZA7 1347 aa31.98■■■□□ 2.71
CNEP1R1-209ENST00000567712 PCDH11YQ9BZA8 1340 aa31.98■■■□□ 2.71
CNEP1R1-209ENST00000567712 KIF24Q5T7B8 1368 aa31.97■■■□□ 2.71
CNEP1R1-209ENST00000567712 TRIM26Q12899 539 aaPredicted RBP31.97■■■□□ 2.71
CNEP1R1-209ENST00000567712 MSH5O43196 834 aa31.96■■■□□ 2.71
CNEP1R1-209ENST00000567712 MSL1Q68DK7 614 aa31.96■■■□□ 2.71
CNEP1R1-209ENST00000567712 ANKRD26Q9UPS8 1709 aa31.96■■■□□ 2.71
CNEP1R1-209ENST00000567712 MPRIPQ6WCQ1 1025 aa31.95■■■□□ 2.71
CNEP1R1-209ENST00000567712 PELP1Q8IZL8 1130 aaKnown RBP31.95■■■□□ 2.71
CNEP1R1-209ENST00000567712 CDCA8Q53HL2 280 aa31.94■■■□□ 2.7
CNEP1R1-209ENST00000567712 PALLDQ8WX93 1383 aa31.94■■■□□ 2.7
CNEP1R1-209ENST00000567712 NCAPD2Q15021 1401 aa31.93■■■□□ 2.7
CNEP1R1-209ENST00000567712 AMIGO3Q86WK7 504 aa31.92■■■□□ 2.7
CNEP1R1-209ENST00000567712 YBX3P16989 372 aaKnown RBP eCLIP31.91■■■□□ 2.7
CNEP1R1-209ENST00000567712 C4BP0C0L5 1744 aa31.9■■■□□ 2.7
CNEP1R1-209ENST00000567712 PPM1GO15355 546 aaPredicted RBP31.89■■■□□ 2.7
CNEP1R1-209ENST00000567712 SMIM5Q71RC9 77 aa31.89■■■□□ 2.7
CNEP1R1-209ENST00000567712 UBR3Q6ZT12 1888 aa31.88■■■□□ 2.69
CNEP1R1-209ENST00000567712 PIGBQ92521 554 aa31.87■■■□□ 2.69
CNEP1R1-209ENST00000567712 EYA1Q99502 592 aa31.85■■■□□ 2.69
CNEP1R1-209ENST00000567712 WASHC2AQ641Q2 1341 aa31.84■■■□□ 2.69
CNEP1R1-209ENST00000567712 C1QTNF8P60827 252 aa31.84■■■□□ 2.69
CNEP1R1-209ENST00000567712 NKX1-1Q15270 411 aaPredicted RBP31.84■■■□□ 2.69
CNEP1R1-209ENST00000567712 POLKQ9UBT6 870 aa31.82■■■□□ 2.68
CNEP1R1-209ENST00000567712 SMARCC1Q92922 1105 aaPredicted RBP31.79■■■□□ 2.68
CNEP1R1-209ENST00000567712 SPG7Q9UQ90 795 aa31.78■■■□□ 2.68
CNEP1R1-209ENST00000567712 LINC00116Q8NCU8 138 aa31.77■■■□□ 2.68
CNEP1R1-209ENST00000567712 FLAD1Q8NFF5 587 aa31.77■■■□□ 2.68
CNEP1R1-209ENST00000567712 SENP3-EIF4A1A0A087X0R7 540 aa31.76■■■□□ 2.67
CNEP1R1-209ENST00000567712 PHF14O94880 888 aa31.76■■■□□ 2.67
CNEP1R1-209ENST00000567712 AK7Q96M32 723 aa31.76■■■□□ 2.67
CNEP1R1-209ENST00000567712 ASAP1Q9ULH1 1129 aa31.75■■■□□ 2.67
CNEP1R1-209ENST00000567712 LOC102724428A0A0B4J2F2 783 aa31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 TNNT2P45379 298 aaPredicted RBP31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 SIK1P57059 783 aa31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 ITPK1Q13572 414 aa31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 POLR3GLQ9BT43 218 aa31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 CD2APQ9Y5K6 639 aa31.74■■■□□ 2.67
CNEP1R1-209ENST00000567712 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 GRIN3BO60391 1043 aa31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 PHKG2P15735 406 aa31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 EIF4A2Q14240 407 aaKnown RBP31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 TIMELESSQ9UNS1 1208 aa31.73■■■□□ 2.67
CNEP1R1-209ENST00000567712 TMOD3Q9NYL9 352 aa31.7■■■□□ 2.67
CNEP1R1-209ENST00000567712 GIGYF1O75420 1035 aaPredicted RBP31.69■■■□□ 2.66
CNEP1R1-209ENST00000567712 IFNL2Q8IZJ0 200 aa31.69■■■□□ 2.66
CNEP1R1-209ENST00000567712 ATG3Q9NT62 314 aa31.68■■■□□ 2.66
CNEP1R1-209ENST00000567712 HMGB2P26583 209 aaKnown RBP31.66■■■□□ 2.66
CNEP1R1-209ENST00000567712 PCGF6Q9BYE7 350 aa31.66■■■□□ 2.66
CNEP1R1-209ENST00000567712 WWC3Q9ULE0 1092 aa31.66■■■□□ 2.66
CNEP1R1-209ENST00000567712 SSFA2P28290 1259 aa31.65■■■□□ 2.66
CNEP1R1-209ENST00000567712 ATP6V1AP38606 617 aa31.65■■■□□ 2.66
CNEP1R1-209ENST00000567712 SLC4A9Q96Q91 983 aa31.64■■■□□ 2.66
CNEP1R1-209ENST00000567712 GNPATO15228 680 aa31.63■■■□□ 2.65
CNEP1R1-209ENST00000567712 IGSF1Q8N6C5 1336 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms